IslandPathversion 1.0

IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.10 STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
611	 33.87	0	617221..617778	+	185	57866498	-	SERP0626	-	acetyltransferase
612	 35.57	0	618425..619363	-	312	57866499	menA	SERP0627	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
613	 28.12	-1	619362..619457	+	31	57866507	-	SERP0628	-	hypothetical protein
614	 32.60	0	619533..620903	+	456	57866508	-	SERP0629	-	isochorismate synthase family protein
615	 34.35	0	620890..622563	+	557	57866509	menD	SERP0630	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
616	 35.82	+1	622550..623353	+	267	57866510	-	SERP0631	-	alpha/beta fold family hydrolase
617	 37.61	+1	623346..624164	+	272	57866511	menB	SERP0632	-	naphthoate synthase
618	 33.50	0	624509..625693	-	394	57866512	-	SERP0633	-	aminotransferase, class I
619	 30.06	0	625836..626843	-	335	57866513	-	SERP0634	-	hypothetical protein
620	 30.24	0	626997..627416	+	139	57866521	-	SERP0635	-	MarR family transcriptional regulator
621	 33.73	0	627656..631663	-	1335	57866522	atlE	SERP0636	-	bifunctional autolysin
622	 31.21	0	631904..632326	-	140	57866523	-	SERP0637	-	acetyltransferase
623	 28.03	-1	632421..632552	-	43	57866524	-	SERP0638	-	truncated IS1272 transposase
624	 33.12	0	632900..633370	-	156	57866525	-	SERP0639	-	hypothetical protein
625	 31.15	0	633418..634656	-	412	57866526	-	SERP0640	-	transcriptional regulator, putative
626	 27.43	-1	635463..636665	+	400	57866527	-	SERP0641	-	fmt protein
627	 33.55	0	636822..637730	-	302	57866528	-	SERP0642	-	ribonucleoside hydrolase RihC
628	 32.99	0	637917..638207	-	96	57866535	qoxD	SERP0643	-	quinol oxidase, subunit IV
629	 35.31	0	638204..638809	-	201	57866536	qoxC	SERP0644	-	quinol oxidase, subunit III
630	 37.31	+1	638799..640787	-	662	57866537	qoxA	SERP0645	-	quinol oxidase, subunit I
631	 34.40	0	640787..641911	-	374	57866538	qoxB	SERP0646	-	quinol oxidase, subunit II
632	 31.76	0	642450..642767	-	105	57866539	-	SERP0647	-	chitinase-related protein
633	 32.29	0	643140..644000	-	286	57866540	folD	SERP0648	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
634	 38.10	+1	644205..644687	+	160	57866541	purE	SERP0649	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
635	 33.24	0	644674..645801	+	375	57866550	purK	SERP0650	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
636	 30.50	0	645802..646506	+	234	57866551	purC	SERP0651	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
637	 32.95	0	646506..646766	+	86	57866552	purS	SERP0652	-	phosphoribosylformylglycinamidine synthase, PurS protein
638	 35.12	0	646768..647439	+	223	57866553	purQ	SERP0653	-	phosphoribosylformylglycinamidine synthase I
639	 35.84	+1	647432..649621	+	729	57866554	purL	SERP0654	-	phosphoribosylformylglycinamidine synthase II
640	 36.23	+1	649600..651084	+	494	57866555	purF	SERP0655	-	amidophosphoribosyltransferase
641	 34.88	0	651077..652108	+	343	57866563	purM	SERP0656	-	phosphoribosylaminoimidazole synthetase
642	 33.16	0	652108..652674	+	188	57866564	purN	SERP0657	-	phosphoribosylglycinamide formyltransferase
643	 34.42	0	652691..654169	+	492	57866565	purH	SERP0658	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
644	 35.83	+1	654195..655436	+	413	57866566	purD	SERP0659	-	phosphoribosylamine--glycine ligase
645	 29.76	0	655569..656408	-	279	57866567	-	SERP0660	-	cobalt transport family protein
646	 33.05	0	656368..657771	-	467	57866568	-	SERP0661	-	ABC transporter, ATP-binding protein
647	 34.55	0	657785..658360	-	191	57866573	-	SERP0662	-	hypothetical protein
648	 33.39	0	658883..660658	+	591	57866574	-	SERP0663	-	67 kDa Myosin-crossreactive antigen
649	 29.03	0	660702..660794	+	30	57866575	-	SERP0664	-	hypothetical protein
650	 26.67	-1	661070..661204	-	44	57866576	-	SERP0665	-	hypothetical protein
651	 28.69	0	661356..662648	+	430	57866577	-	SERP0666	-	hypothetical protein
652	 30.43	0	662954..664126	+	390	57866578	-	SERP0667	-	hypothetical protein
653	 33.52	0	664186..664725	+	179	57866579	-	SERP0668	-	hypothetical protein
654	 34.46	0	664881..665147	+	88	57866580	ptsH	SERP0669	-	phosphocarrier protein HPr
655	 35.83	+1	665150..666868	+	572	57866581	ptsI	SERP0670	-	phosphoenolpyruvate-protein phosphotransferase
656	 24.89	-1	667143..667379	-	78	57866590	-	SERP0671	-	hypothetical protein
657	 33.78	0	667579..668934	+	451	57866591	cydA	SERP0672	-	cytochrome d ubiquinol oxidase, subunit I
658	 30.19	0	668931..669947	+	338	57866592	cydB	SERP0673	-	cytochrome d ubiquinol oxidase, subunit II
659	 33.79	0	670003..670662	+	219	57866593	-	SERP0674	-	potassium uptake protein TrkA
660	 34.76	0	671644..673326	-	560	57866594	-	SERP0676	-	metallo-beta-lactamase family protein
661	 30.14	0	673326..673544	-	72	57866595	-	SERP0677	-	hypothetical protein
662	 35.69	0	673977..674528	-	183	57866596	def	SERP0678	-	peptide deformylase
663	 27.59	-1	674711..675337	+	208	57866605	-	SERP0679	-	hypothetical protein
664	 37.11	+1	675508..676620	+	370	57866606	pdhA	SERP0680	-	pyruvate dehydrogenase complex E1 component, alpha subunit
665	 38.55	+1	676624..677601	+	325	57866607	pdhB	SERP0681	-	pyruvate dehydrogenase complex E1 component, beta subunit
666	 36.79	+1	677732..679033	+	433	57866608	pdhC	SERP0682	-	branched-chain alpha-keto acid dehydrogenase subunit E2
667	 36.89	+1	679038..680444	+	468	57866609	pdhD	SERP0683	-	dihydrolipoamide dehydrogenase
668	 23.66	-2	680746..681024	+	92	57866617	-	SERP0684	-	hypothetical protein
669	 29.81	0	681163..681702	+	179	57866618	-	SERP0685	-	Cro/CI family transcriptional regulator
670	 31.69	0	681714..682808	+	364	57866619	potA	SERP0686	-	spermidine/putrescine ABC transporter, ATP-binding protein
671	 30.35	0	682801..683604	+	267	57866620	potB	SERP0687	-	spermidine/putrescine ABC transporter, permease protein PotB
672	 32.23	0	683610..684422	+	270	57866621	potC	SERP0688	-	spermidine/putrescine ABC transporter, permease protein PotC
673	 32.12	0	684419..685492	+	357	57866622	potD	SERP0689	-	spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein
674	 30.82	0	685561..686712	+	383	57866631	-	SERP0690	-	hypothetical protein
675	 30.91	0	687017..687553	+	178	57866632	-	SERP0691	-	hypothetical protein
676	 33.33	0	687766..689127	-	453	57866633	-	SERP0692	-	Mn2+/Fe2+ transporter
677	 31.21	0	689242..689853	-	203	57866634	-	SERP0693	-	hypothetical protein
678	 34.55	0	690030..690851	+	273	57866635	-	SERP0694	-	inositol monophosphatase family protein
679	 29.69	0	691405..691596	-	63	57866636	-	SERP0695	-	hypothetical protein
680	 36.96	+1	691695..693542	+	615	57866637	-	SERP0696	-	GTP-binding protein TypA
681	 33.23	0	693996..695009	+	337	57866638	-	SERP0697	-	ISSep1-like transposase
682	 32.69	0	696078..696233	-	51	57866646	-	SERP0699	-	hypothetical protein
683	 31.68	0	696235..696717	-	160	57866647	-	SERP0700	-	hypothetical protein
684	 30.43	0	696862..697137	+	91	57866648	-	SERP0701	-	hypothetical protein
685	 22.96	-2	697382..697516	-	44	57866649	-	SERP0702	-	hypothetical protein
686	 32.19	0	697539..698762	+	407	57866650	-	SERP0703	-	cell cycle protein FtsW
687	 35.80	+1	699164..702607	+	1147	57866651	pyc	SERP0704	-	pyruvate carboxylase
688	 32.89	0	702756..703664	-	302	57866652	ctaA	SERP0705	-	cytochrome oxidase assembly protein
689	 34.32	0	703965..704876	+	303	57866667	ctaB	SERP0706	-	protoheme IX farnesyltransferase
690	 33.77	0	704902..705363	+	153	57866668	-	SERP0707	-	hypothetical protein
691	 31.15	0	705805..706857	+	350	57866669	-	SERP0708	-	hypothetical protein
692	 34.02	0	706878..707312	+	144	57866615	-	SERP0709	-	hypothetical protein
693	 35.81	+1	707827..708753	-	308	57866616	-	SERP0710	-	glycerophosphoryl diester phosphodiesterase, putative
694	 28.33	-1	708783..708902	+	39	57866623	-	SERP0711	-	hypothetical protein
695	 28.97	0	708974..709225	+	83	57866624	-	SERP0712	-	hypothetical protein
696	 32.56	0	709235..709624	-	129	57866625	-	SERP0713	-	hypothetical protein
697	 32.41	0	709691..710233	+	180	57866626	-	SERP0714	-	hypothetical protein
698	 33.74	0	710235..710720	+	161	57866627	coaD	SERP0715	-	pantetheine-phosphate adenylyltransferase
699	 32.54	0	711124..712257	-	377	57866628	-	SERP0716	-	hypothetical protein
700	 33.15	0	712384..712938	+	184	57866629	-	SERP0717	-	hypothetical protein
701	 35.06	0	713016..713189	+	57	57866630	rpmF	SERP0718	-	50S ribosomal protein L32
702	 41.41	+2	713669..716143	-	824	57866639	-	SERP0719	-	cell wall surface anchor family protein
703	 34.41	0	716482..717222	+	246	57866640	-	SERP0720	-	RNA methyltransferase
704	 34.47	0	717590..718648	+	352	57866641	pheS	SERP0721	-	phenylalanyl-tRNA synthetase subunit alpha
705	 34.91	0	718648..721050	+	800	57866642	pheT	SERP0722	-	phenylalanyl-tRNA synthetase, beta subunit
706	 32.79	0	721102..722028	-	308	57866643	rnhC	SERP0723	-	ribonuclease HIII
707	 29.96	0	722287..722553	+	88	57866644	-	SERP0724	-	hypothetical protein
708	 27.59	-1	722554..723075	+	173	57866645	-	SERP0725	-	bacteriocin production protein, putative
709	 33.74	0	723150..724859	+	569	57866653	-	SERP0726	-	hypothetical protein
710	 33.89	0	724869..727217	+	782	57866654	-	SERP0727	-	recombination and DNA strand exchange inhibitor protein
32.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.