IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.10   STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
380	 32.94	0	386108..387622	+	504	57866321	-	SERP0386	-	ABC transporter, permease protein
381	 32.67	0	387825..388880	+	351	57866322	hisC	SERP0387	-	histidinol-phosphate aminotransferase
382	 33.33	0	389003..389542	+	179	57866323	-	SERP0388	-	hypothetical protein
383	 34.67	0	389609..392218	-	869	57866324	-	SERP0389	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
384	 32.36	0	392617..393540	-	307	57866325	bmrU	SERP0390	-	bmrU protein
385	 34.26	0	394195..395700	-	501	57866326	-	SERP0392	-	di-tripeptide transporter, putative
386	 26.04	-1	395687..395782	-	31	57866327	-	SERP0393	-	hypothetical protein
387	 30.14	0	395984..396484	-	166	57866328	-	SERP0394	-	7-cyano-7-deazaguanine reductase
388	 31.39	0	396498..397373	-	291	57866329	-	SERP0395	-	hypothetical protein
389	 33.08	0	398129..398527	+	132	57866330	nrdI	SERP0396	-	ribonucleotide reductase stimulatory protein
390	 32.05	0	398490..400595	+	701	57866331	nrdE	SERP0397	-	ribonucleotide-diphosphate reductase subunit alpha
391	 31.37	0	400714..401682	+	322	57866341	nrdF	SERP0398	-	ribonucleotide-diphosphate reductase subunit beta
392	 20.22	-2	401654..401920	+	88	57866342	-	SERP0399	-	hypothetical protein
393	 31.08	0	401936..402910	+	324	57866343	-	SERP0400	-	iron compound ABC transporter, permease protein
394	 29.35	0	402900..403853	+	317	57866344	-	SERP0401	-	iron compound ABC transporter, permease protein
395	 30.13	0	403850..404629	+	259	57866345	-	SERP0402	-	iron compound ABC transporter, ATP-binding protein
396	 28.07	-1	404708..405751	+	347	57866346	-	SERP0403	-	transferrin receptor
397	 30.16	0	405902..406216	-	104	57866347	-	SERP0404	-	hypothetical protein
398	 37.89	+1	406238..407158	-	306	57866357	murB	SERP0405	-	UDP-N-acetylenolpyruvoylglucosamine reductase
399	 28.79	0	407287..407814	-	175	57866358	-	SERP0406	-	hypothetical protein
400	 25.03	-1	407931..408821	+	296	57866359	-	SERP0407	-	putative lipoprotein
401	 31.78	0	408970..409290	+	106	57866360	-	SERP0408	-	hypothetical protein
402	 33.69	0	409561..410691	+	376	57866361	-	SERP0409	-	glycerate kinase family protein
403	 35.84	+1	410782..412020	-	412	57866362	pepT	SERP0410	-	peptidase T
404	 31.72	0	412041..412535	-	164	57866363	-	SERP0411	-	hypothetical protein
405	 36.61	+1	412551..413312	-	253	57866364	-	SERP0412	-	hypothetical protein
406	 30.83	0	413507..414583	-	358	57866373	-	SERP0413	-	GGDEF domain-containing protein
407	 32.22	0	414923..416002	+	359	57866374	-	SERP0414	-	glycosyl transferase, group 4 family protein
408	 33.80	0	416063..416704	-	213	57866375	-	SERP0415	-	hypothetical protein
409	 34.26	0	416849..417715	+	288	57866376	-	SERP0416	-	DegV family protein
410	 32.82	0	417958..419121	+	387	57866377	-	SERP0417	-	comF operon protein 1, putative
411	 33.04	0	419114..419788	+	224	57866378	-	SERP0418	-	comF operon protein 3
412	 31.40	0	419849..420418	+	189	57866379	-	SERP0419	-	ribosomal subunit interface protein
413	 34.87	0	421084..423618	+	844	57866380	secA	SERP0420	-	preprotein translocase subunit SecA
414	 34.83	0	423814..424930	+	371	57866389	prfB	SERP0421	-	peptide chain release factor 2
415	 36.20	+1	425270..426070	+	266	57866390	-	SERP0422	-	LysM domain-containing protein
416	 30.84	0	426379..427020	+	213	57866391	-	SERP0423	-	HD domain-containing protein
417	 31.62	0	427026..427259	+	77	57866392	-	SERP0424	-	hypothetical protein
418	 27.96	-1	427742..427834	-	30	57866393	-	SERP0425	-	hypothetical protein
419	 34.44	0	427816..429801	+	661	57866394	uvrB	SERP0426	-	excinuclease ABC subunit B
420	 34.89	0	429809..432643	+	944	57866395	uvrA	SERP0427	-	excinuclease ABC, A subunit
421	 34.19	0	432998..433930	+	310	57866396	hprK	SERP0428	-	HPr kinase/phosphorylase
422	 35.48	0	433936..434775	+	279	57866405	lgt	SERP0429	-	prolipoprotein diacylglyceryl transferase
423	 31.63	0	434781..435308	+	175	57866406	-	SERP0430	-	acetyltransferase, putative
424	 30.14	0	435275..436714	+	479	57866407	yvcD	SERP0431	-	yvcD protein
425	 37.62	+1	436779..437711	+	310	57866408	trxB	SERP0432	-	thioredoxin-disulfide reductase
426	 31.87	0	437908..438795	+	295	57866409	-	SERP0433	-	hypothetical protein
427	 34.45	0	438804..439790	+	328	57866410	-	SERP0434	-	hypothetical protein
428	 31.96	0	439919..440863	+	314	57866411	-	SERP0435	-	hypothetical protein
429	 34.70	0	441191..441775	+	194	57866412	clpP	SERP0436	-	ATP-dependent Clp protease, proteolytic subunit ClpP
430	 23.44	-2	442037..442228	-	63	57866422	-	SERP0437	-	hypothetical protein
431	 35.78	+1	442259..443158	-	299	57866423	-	SERP0438	-	hypothetical protein
432	 33.66	0	444023..444643	+	206	57866424	-	SERP0439	-	hypothetical protein
433	 25.74	-1	444816..445052	-	78	57866425	-	SERP0440	-	hypothetical protein
434	 37.48	+1	445408..446421	+	337	57866426	gapR	SERP0441	-	gap transcriptional regulator
435	 37.69	+1	446473..447483	+	336	57866427	gapA-1	SERP0442	-	glyceraldehyde 3-phosphate dehydrogenase
436	 33.25	0	447677..448867	+	396	57866428	pgk	SERP0443	-	phosphoglycerate kinase
437	 36.75	+1	448998..449759	+	253	57866429	tpiA	SERP0444	-	triosephosphate isomerase
438	 36.30	+1	449762..451279	+	505	57866439	pgm	SERP0445	-	phosphoglyceromutase
439	 36.02	+1	451418..452722	+	434	57866440	eno	SERP0446	-	enolase
440	 29.19	0	452888..453346	+	152	57866441	-	SERP0447	-	hypothetical protein
441	 30.34	0	453415..453648	+	77	57866442	secG	SERP0448	-	preprotein translocase subunit SecG
442	 34.55	0	453949..454689	+	246	57866443	est	SERP0449	-	carboxylesterase
443	 34.89	0	454724..457102	+	792	57866444	-	SERP0450	-	VacB/RNase II family exoribonuclease
444	 35.24	0	457127..457597	+	156	57866445	smpB	SERP0451	-	SsrA-binding protein
445	 23.81	-2	458147..458377	-	76	57866446	-	SERP0452	-	hypothetical protein
446	 24.34	-2	458978..459166	+	62	57866455	-	SERP0454	-	hypothetical protein
447	 30.02	0	459310..459852	-	180	57866456	-	SERP0455	-	putative lipoprotein
448	 26.32	-1	460587..460757	+	56	57866338	-	SERP0456	-	hypothetical protein
449	 28.21	-1	461015..461248	-	77	57866339	-	SERP0457	-	hypothetical protein
450	 31.96	0	461861..463168	-	435	57866340	-	SERP0458	-	sodium transport family protein
451	 19.79	-2	463194..463289	-	31	57866348	-	SERP0459	-	hypothetical protein
452	 27.54	-1	463394..463738	+	114	57866349	-	SERP0460	-	hypothetical protein
453	 24.94	-1	463958..464374	-	138	57866350	-	SERP0461	-	glyoxalase family protein
454	 25.42	-1	465190..465366	-	58	57866351	-	SERP0462	-	hypothetical protein
455	 33.13	0	465874..466377	-	167	57866352	-	SERP0463	-	hypothetical protein
456	 25.40	-1	466549..466674	+	41	57866353	-	SERP0464	-	hypothetical protein
457	 31.53	0	466664..467605	+	313	57866354	-	SERP0465	-	cation efflux family protein
458	 38.31	+1	468971..469171	+	66	57866355	-	SERP0466	-	CSD family cold shock protein
459	 29.78	0	469792..470016	-	74	57866356	-	SERP0467	-	hypothetical protein
460	 28.42	-1	470040..470324	-	94	57866365	-	SERP0468	-	hypothetical protein
461	 30.92	0	470423..471169	-	248	57866366	-	SERP0469	-	hypothetical protein
462	 25.32	-1	471450..471686	+	78	57866367	-	SERP0470	-	flagellar hook-length control protein-related protein
463	 29.73	0	471746..472300	-	184	57866368	-	SERP0471	-	hypothetical protein
464	 27.51	-1	472490..472678	-	62	57866369	-	SERP0472	-	hypothetical protein
465	 21.74	-2	473071..473208	+	45	57866370	-	SERP0473	-	hypothetical protein
466	 27.94	-1	473369..473572	+	67	57866371	-	SERP0474	-	hypothetical protein
467	 28.69	0	473564..473800	-	78	57866372	-	SERP0475	-	hypothetical protein
468	 33.16	0	474014..474601	+	195	57866381	-	SERP0476	-	phosphoglycerate mutase family protein
469	 27.15	-1	474872..475372	-	166	57866382	-	SERP0477	-	acetyltransferase
470	 32.05	0	475958..476113	+	51	57866383	-	SERP0478	-	truncated IS1272 transposase
471	 27.56	-1	476098..476253	+	51	57866384	-	SERP0479	-	truncated IS1272 transposase
472	 37.12	+1	476297..476719	-	140	57866385	-	SERP0480	-	OsmC/Ohr family protein
473	 35.29	0	476880..477596	+	238	57866386	aroD	SERP0481	-	3-dehydroquinate dehydratase
474	 33.70	0	477677..478219	+	180	57866387	-	SERP0482	-	nitroreductase family protein
475	 32.10	0	478402..478725	-	107	57866388	-	SERP0483	-	thioredoxin, putative
476	 30.23	0	478868..479221	+	117	57866397	-	SERP0484	-	hypothetical protein
477	 34.12	0	479395..479775	+	126	57866398	gcvH	SERP0485	-	glycine cleavage system protein H
478	 34.41	0	479929..480021	+	30	57866399	-	SERP0486	-	hypothetical protein
479	 28.42	-1	480035..480421	+	128	57866400	-	SERP0487	-	TOPRIM domain-containing protein
32.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.