IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.10   STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
317	 24.44	-2	326756..327115	+	119	57866237	sarX	SERP0321	-	accessory regulator A-like protein
318	 35.01	0	327368..328084	+	238	57866238	-	SERP0322	-	hypothetical protein
319	 34.17	0	328084..328560	+	158	57866239	-	SERP0323	-	hypothetical protein
320	 30.67	0	328812..329486	-	224	57866240	scdA	SERP0324	-	cell wall biosynthesis protein ScdA
321	 32.64	0	329658..330803	+	381	57866249	-	SERP0325	-	flavohemoprotein, putative
322	 25.57	-1	330790..331008	+	72	57866250	-	SERP0326	-	hypothetical protein
323	 32.49	0	331297..331890	+	197	57866251	-	SERP0327	-	hypothetical protein
324	 32.98	0	331971..332825	+	284	57866252	-	SERP0328	-	LysR family transcriptional regulator
325	 32.42	0	332883..334091	+	402	57866253	-	SERP0329	-	sugar efflux transporter, putative
326	 31.49	0	334098..334586	+	162	57866254	-	SERP0330	-	hypothetical protein
327	 31.01	0	334642..335331	-	229	57866255	-	SERP0331	-	hypothetical protein
328	 31.91	0	335770..336192	+	140	57866256	-	SERP0332	-	putative lipoprotein
329	 29.97	0	336324..336620	+	98	57866257	-	SERP0333	-	hypothetical protein
330	 33.52	0	336746..337294	+	182	57866266	-	SERP0334	-	acetyltransferase
331	 35.80	+1	337593..338159	-	188	57866267	-	SERP0335	-	decarboxylase family protein
332	 34.89	0	338170..338619	-	149	57866268	-	SERP0336	-	hypothetical protein
333	 30.40	0	338622..339302	-	226	57866269	-	SERP0337	-	hypothetical protein
334	 29.25	0	339499..339963	+	154	57866270	-	SERP0338	-	hypothetical protein
335	 32.99	0	340246..341118	-	290	57866271	uppP	SERP0339	-	undecaprenyl pyrophosphate phosphatase
336	 32.11	0	341329..342963	+	544	57866272	-	SERP0340	-	ABC transporter ATP-binding protein
337	 30.56	0	342960..344654	+	564	57866273	-	SERP0341	-	ABC transporter ATP-binding protein
338	 33.56	0	344895..345338	-	147	57866282	norR	SERP0342	-	MarR family transcriptional regulator
339	 32.35	0	345338..345439	-	33	57866283	-	SERP0343	-	hypothetical protein
340	 32.69	0	345560..346486	+	308	57866284	-	SERP0344	-	cobalamin synthesis/P47K family protein
341	 24.15	-2	346508..346801	+	97	57866285	-	SERP0345	-	hypothetical protein
342	 25.85	-1	346794..346940	+	48	57866286	-	SERP0346	-	hypothetical protein
343	 35.77	+1	346930..347871	+	313	57866287	mdh	SERP0347	-	malate dehydrogenase
344	 34.55	0	348005..349561	+	518	57866288	-	SERP0348	-	anion transporter family protein
345	 29.18	0	349758..351131	+	457	57866289	-	SERP0349	-	deoxyribodipyrimidine photolyase, putative
346	 24.44	-2	351181..351450	-	89	57866296	-	SERP0350	-	hypothetical protein
347	 27.83	-1	351447..352064	-	205	57866297	-	SERP0351	-	hypothetical protein
348	 31.72	0	352059..352244	+	61	57866298	-	SERP0352	-	hypothetical protein
349	 32.13	0	352474..353637	+	387	57866299	norA	SERP0353	-	quinolone resistance protein NorA
350	 28.24	-1	353959..354429	+	156	57866300	-	SERP0354	-	hypothetical protein
351	 32.35	0	354519..355025	+	168	57866301	-	SERP0355	-	ebsC protein, putative
352	 27.27	-1	355125..355223	-	32	57866302	-	SERP0356	-	hypothetical protein
353	 33.07	0	355256..356014	+	252	57866303	-	SERP0357	-	DeoR family transcriptional regulator
354	 36.26	+1	356011..356931	+	306	57866304	fruK	SERP0358	-	1-phosphofructokinase
355	 36.87	+1	356937..358889	+	650	57866311	fruA	SERP0359	-	PTS system, fructose-specific IIABC components
356	 37.25	+1	359264..360436	+	390	57866312	nagA	SERP0360	-	N-acetylglucosamine-6-phosphate deacetylase
357	 31.78	0	360673..362022	+	449	57866313	-	SERP0361	-	CBS domain-containing protein
358	 31.55	0	362236..363075	+	279	57866314	-	SERP0362	-	aldo/keto reductase family oxidoreductase
359	 31.07	0	363278..364384	+	368	57866315	-	SERP0363	-	glycosyl transferase, group 2 family protein
360	 30.75	0	364454..365419	-	321	57866316	saeS	SERP0364	-	sensor histidine kinase SaeS
361	 32.61	0	365509..366198	-	229	57866317	saeR	SERP0365	-	DNA-binding response regulator SaeR
362	 32.07	0	366173..366646	-	157	57866332	-	SERP0366	-	hypothetical protein
363	 29.45	0	366697..367134	-	145	57866333	-	SERP0367	-	putative lipoprotein
364	 32.32	0	367540..367638	+	32	57866334	-	SERP0368	-	hypothetical protein
365	 31.41	0	367730..367885	-	51	57866335	-	SERP0369	-	truncated IS1272 transposase
366	 29.17	0	368235..368834	-	199	57866336	-	SERP0370	-	hypothetical protein
367	 34.12	0	368937..369575	-	212	57866337	-	SERP0371	-	exsD protein
368	 32.86	0	369651..370070	-	139	57866293	-	SERP0372	-	6-pyruvoyl tetrahydrobiopterin synthase, putative
369	 32.44	0	370075..370746	-	223	57866294	-	SERP0373	-	exsB protein
370	 34.18	0	371043..371630	+	195	57866295	pabA	SERP0374	-	para-aminobenzoate synthase, glutamine amidotransferase, component II
371	 27.05	-1	373430..373636	+	68	57866305	-	SERP0376	-	hypothetical protein
372	 34.53	0	374374..375378	+	334	57866306	-	SERP0378	-	urea amidolyase-related protein
373	 32.51	0	375930..377870	+	646	57866307	-	SERP0379	-	sulfatase family protein
374	 33.33	0	378546..379559	-	337	57866308	-	SERP0380	-	ISSep1-like transposase
375	 23.15	-2	379917..380024	-	35	57866309	-	SERP0381	-	hypothetical protein
376	 40.32	+2	380323..381138	-	271	57866310	-	SERP0382	-	gufA protein, putative
377	 32.64	0	381266..383149	+	627	57866318	-	SERP0383	-	ABC transporter, ATP-binding protein
378	 33.61	0	383163..384941	+	592	57866319	recQ-1	SERP0384	-	ATP-dependent DNA helicase RecQ
379	 33.33	0	385141..386115	+	324	57866320	-	SERP0385	-	ABC transporter, ATP-binding protein
380	 32.94	0	386108..387622	+	504	57866321	-	SERP0386	-	ABC transporter, permease protein
381	 32.67	0	387825..388880	+	351	57866322	hisC	SERP0387	-	histidinol-phosphate aminotransferase
382	 33.33	0	389003..389542	+	179	57866323	-	SERP0388	-	hypothetical protein
383	 34.67	0	389609..392218	-	869	57866324	-	SERP0389	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
384	 32.36	0	392617..393540	-	307	57866325	bmrU	SERP0390	-	bmrU protein
385	 34.26	0	394195..395700	-	501	57866326	-	SERP0392	-	di-tripeptide transporter, putative
386	 26.04	-1	395687..395782	-	31	57866327	-	SERP0393	-	hypothetical protein
387	 30.14	0	395984..396484	-	166	57866328	-	SERP0394	-	7-cyano-7-deazaguanine reductase
388	 31.39	0	396498..397373	-	291	57866329	-	SERP0395	-	hypothetical protein
389	 33.08	0	398129..398527	+	132	57866330	nrdI	SERP0396	-	ribonucleotide reductase stimulatory protein
390	 32.05	0	398490..400595	+	701	57866331	nrdE	SERP0397	-	ribonucleotide-diphosphate reductase subunit alpha
391	 31.37	0	400714..401682	+	322	57866341	nrdF	SERP0398	-	ribonucleotide-diphosphate reductase subunit beta
392	 20.22	-2	401654..401920	+	88	57866342	-	SERP0399	-	hypothetical protein
393	 31.08	0	401936..402910	+	324	57866343	-	SERP0400	-	iron compound ABC transporter, permease protein
394	 29.35	0	402900..403853	+	317	57866344	-	SERP0401	-	iron compound ABC transporter, permease protein
395	 30.13	0	403850..404629	+	259	57866345	-	SERP0402	-	iron compound ABC transporter, ATP-binding protein
396	 28.07	-1	404708..405751	+	347	57866346	-	SERP0403	-	transferrin receptor
397	 30.16	0	405902..406216	-	104	57866347	-	SERP0404	-	hypothetical protein
398	 37.89	+1	406238..407158	-	306	57866357	murB	SERP0405	-	UDP-N-acetylenolpyruvoylglucosamine reductase
399	 28.79	0	407287..407814	-	175	57866358	-	SERP0406	-	hypothetical protein
400	 25.03	-1	407931..408821	+	296	57866359	-	SERP0407	-	putative lipoprotein
401	 31.78	0	408970..409290	+	106	57866360	-	SERP0408	-	hypothetical protein
402	 33.69	0	409561..410691	+	376	57866361	-	SERP0409	-	glycerate kinase family protein
403	 35.84	+1	410782..412020	-	412	57866362	pepT	SERP0410	-	peptidase T
404	 31.72	0	412041..412535	-	164	57866363	-	SERP0411	-	hypothetical protein
405	 36.61	+1	412551..413312	-	253	57866364	-	SERP0412	-	hypothetical protein
406	 30.83	0	413507..414583	-	358	57866373	-	SERP0413	-	GGDEF domain-containing protein
407	 32.22	0	414923..416002	+	359	57866374	-	SERP0414	-	glycosyl transferase, group 4 family protein
408	 33.80	0	416063..416704	-	213	57866375	-	SERP0415	-	hypothetical protein
409	 34.26	0	416849..417715	+	288	57866376	-	SERP0416	-	DegV family protein
410	 32.82	0	417958..419121	+	387	57866377	-	SERP0417	-	comF operon protein 1, putative
411	 33.04	0	419114..419788	+	224	57866378	-	SERP0418	-	comF operon protein 3
412	 31.40	0	419849..420418	+	189	57866379	-	SERP0419	-	ribosomal subunit interface protein
413	 34.87	0	421084..423618	+	844	57866380	secA	SERP0420	-	preprotein translocase subunit SecA
414	 34.83	0	423814..424930	+	371	57866389	prfB	SERP0421	-	peptide chain release factor 2
415	 36.20	+1	425270..426070	+	266	57866390	-	SERP0422	-	LysM domain-containing protein
416	 30.84	0	426379..427020	+	213	57866391	-	SERP0423	-	HD domain-containing protein
32.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.