IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.10   STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
236	 34.91	0	247039..248115	+	358	57866189	-	SERP0240	-	phosphomevalonate kinase
237	 34.21	0	248326..248667	+	113	57866190	-	SERP0241	-	hypothetical protein
238	 32.81	0	249056..250387	-	443	57866191	-	SERP0242	-	pyridine nucleotide-disulfide oxidoreductase family protein
239	 31.91	0	250392..250814	-	140	57866192	-	SERP0243	-	hypothetical protein
240	 33.76	0	250971..251909	+	312	57866193	-	SERP0244	-	aldo/keto reductase family oxidoreductase
241	 34.60	0	252370..255051	+	893	57866201	-	SERP0245	-	transporter, putative
242	 35.13	0	255075..256019	+	314	57866202	-	SERP0246	-	ABC transporter, substrate-binding protein, putative
243	 31.93	0	256369..256938	+	189	57866203	-	SERP0247	-	transcriptional regulator, putative
244	 28.57	0	256979..257083	-	34	57866204	-	SERP0248	-	hypothetical protein
245	 34.22	0	257149..257823	+	224	57866205	-	SERP0249	-	IS431mec-like transposase
246	 32.91	0	258272..258748	+	158	57866206	-	SERP0250	-	acetyltransferase
247	 31.64	0	258840..260138	+	432	57866207	-	SERP0251	-	HD domain-containing protein
248	 34.69	0	260186..260701	+	171	57866208	-	SERP0252	-	hypothetical protein
249	 35.02	0	260788..261975	-	395	57866209	-	SERP0253	-	hypothetical protein
250	 36.29	+1	261972..262748	-	258	57866226	-	SERP0254	-	AIR carboxylase, putative
251	 33.57	0	262763..263590	-	275	57866227	-	SERP0255	-	hypothetical protein
252	 33.88	0	263610..264884	-	424	57866228	-	SERP0256	-	hypothetical protein
253	 38.61	+1	265167..266189	+	340	57866229	-	SERP0257	-	alcohol dehydrogenase
254	 23.66	-2	266272..266664	+	130	57866230	-	SERP0258	-	hypothetical protein
255	 22.52	-2	266777..266887	+	36	57866231	-	SERP0259	-	hypothetical protein
256	 33.33	0	267446..268459	+	337	57866232	-	SERP0260	-	ISSep1-like transposase
257	 30.26	0	268675..269130	+	151	57866241	-	SERP0261	-	hypothetical protein
258	 34.54	0	269127..270788	+	553	57866242	argS	SERP0262	-	arginyl-tRNA synthetase
259	 30.66	0	271030..271665	+	211	57866243	-	SERP0263	-	endonuclease III, putative
260	 27.62	-1	271720..272472	+	250	57866244	-	SERP0264	-	MerR family transcriptional regulator
261	 40.87	+2	272481..272732	+	83	57866245	-	SERP0265	-	hypothetical protein
262	 31.19	0	272919..273806	+	295	57866246	-	SERP0266	-	iron compound ABC transporter, iron compound-binding protein, putative
263	 32.91	0	274083..275027	+	314	57866247	-	SERP0267	-	iron compound ABC transporter, permease protein
264	 31.69	0	275086..275814	+	242	57866248	-	SERP0268	-	HAD superfamily hydrolase
265	 34.09	0	275792..276589	+	265	57866258	-	SERP0269	-	alpha/beta fold family hydrolase
266	 30.39	0	276794..277303	+	169	57866259	-	SERP0270	-	hypothetical protein
267	 21.95	-2	277340..277462	+	40	57866260	-	SERP0271	-	hypothetical protein
268	 28.06	-1	277548..278267	+	239	57866261	-	SERP0272	-	hypothetical protein
269	 30.24	0	278475..279251	+	258	57866262	-	SERP0273	-	alpha/beta fold family hydrolase
270	 26.13	-1	279424..279798	-	124	57866263	sarA	SERP0274	-	accessory regulator A
271	 26.52	-1	280211..281164	-	317	57866264	-	SERP0275	-	hypothetical protein
272	 31.99	0	281490..282383	-	297	57866265	-	SERP0276	-	hypothetical protein
273	 22.86	-2	282382..282486	+	34	57866274	-	SERP0277	-	hypothetical protein
274	 27.21	-1	282518..282664	+	48	57866275	-	SERP0278	-	hypothetical protein
275	 26.22	-1	282773..282997	-	74	57866276	-	SERP0279	-	hypothetical protein
276	 32.37	0	283013..283219	-	68	57866277	-	SERP0280	-	hypothetical protein
277	 33.08	0	283943..286345	+	800	57866278	-	SERP0281	-	putative monovalent cation/H+ antiporter subunit A
278	 32.39	0	286332..286757	+	141	57866279	-	SERP0282	-	putative monovalent cation/H+ antiporter subunit B
279	 29.86	0	286754..287098	+	114	57866280	-	SERP0283	-	putative monovalent cation/H+ antiporter subunit C
280	 33.87	0	287091..288590	+	499	57866281	-	SERP0284	-	putative monovalent cation/H+ antiporter subunit D
281	 27.74	-1	288587..289069	+	160	57866290	-	SERP0285	-	putative monovalent cation/H+ antiporter subunit E
282	 34.32	0	289066..289368	+	100	57866291	-	SERP0286	-	putative monovalent cation/H+ antiporter subunit F
283	 31.40	0	289343..289807	+	154	57866292	-	SERP0287	-	putative monovalent cation/H+ antiporter subunit G
284	 30.56	0	290114..290221	+	35	57866180	-	SERP0288	-	hypothetical protein
285	 34.02	0	290256..292295	+	679	57866181	-	SERP0289	-	Na+/H+ antiporter, putative
286	 30.86	0	293030..293959	-	309	57866182	sitC	SERP0290	-	ABC transporter, substrate-binding protein
287	 31.66	0	293956..294792	-	278	57866183	sitB	SERP0291	-	ABC transporter, permease protein
288	 31.59	0	294793..295539	-	248	57866184	sitA	SERP0292	-	ABC transporter, ATP-binding protein
289	 31.01	0	295659..296303	+	214	57866185	sirR	SERP0293	-	iron-dependent repressor
290	 30.39	0	296468..297214	-	248	57866194	-	SERP0294	-	hypothetical protein
291	 32.67	0	297389..298147	+	252	57866195	tagA	SERP0295	-	UDP-N-acetyl-D-mannosamine transferase
292	 30.94	0	298225..299019	-	264	57866196	-	SERP0296	-	teichoic acids export protein ATP-binding subunit
293	 32.10	0	299351..300163	+	270	57866197	-	SERP0297	-	tagG protein, teichoic acid ABC transporter protein, putative
294	 30.40	0	300486..301577	+	363	57866198	-	SERP0298	-	teichoic acid biosynthesis protein B, putative
295	 34.55	0	301577..302641	+	354	57866199	-	SERP0299	-	teichoic acid biosynthesis protein X, putative
296	 34.09	0	302776..303174	+	132	57866200	tagD	SERP0300	-	glycerol-3-phosphate cytidylyltransferase
297	 26.13	-1	303316..303426	+	36	57866210	-	SERP0301	-	hypothetical protein
298	 28.67	0	303515..303664	+	49	57866211	-	SERP0302	-	hypothetical protein
299	 33.22	0	304158..305885	+	575	57866212	abcA	SERP0303	-	ABC transporter, ATP-binding/permease protein
300	 34.23	0	306171..307400	+	409	57866213	-	SERP0304	-	nucleoside permease NupC, putative
301	 32.73	0	307937..308770	+	277	57866214	-	SERP0305	-	hypothetical protein
302	 34.96	0	309129..309926	+	265	57866215	-	SERP0306	-	iron compound ABC transporter, ATP-binding protein
303	 32.53	0	310246..310746	+	166	57866216	-	SERP0307	-	hypothetical protein
304	 34.83	0	310971..312038	+	355	57866217	-	SERP0308	-	hypothetical protein
305	 33.14	0	312317..313366	+	349	57866218	-	SERP0309	-	lipase/esterase, putative
306	 33.14	0	313927..314433	-	168	57866219	-	SERP0310	-	acetyltransferase
307	 32.90	0	314542..315465	+	307	57866220	-	SERP0311	-	hypothetical protein
308	 30.96	0	315484..316158	+	224	57866221	-	SERP0312	-	DNA-binding response regulator
309	 30.36	0	316151..317191	+	346	57866222	-	SERP0313	-	sensor histidine kinase
310	 31.63	0	317337..318098	+	253	57866223	-	SERP0314	-	ABC transporter, ATP-binding protein
311	 29.15	0	318088..319977	+	629	57866224	-	SERP0315	-	ABC transporter, permease protein
312	 31.72	0	320499..321116	+	205	57866225	-	SERP0316	-	hypothetical protein
313	 34.62	0	321131..322141	+	336	57866233	-	SERP0317	-	phosphate transporter family protein
314	 36.70	+1	322334..323134	-	266	57866234	-	SERP0318	-	LysM domain-containing protein
315	 29.39	0	323545..324204	+	219	57866235	-	SERP0319	-	hypothetical protein
316	 27.17	-1	324467..326641	+	724	57866236	-	SERP0320	-	AraC family transcriptional regulator
317	 24.44	-2	326756..327115	+	119	57866237	sarX	SERP0321	-	accessory regulator A-like protein
318	 35.01	0	327368..328084	+	238	57866238	-	SERP0322	-	hypothetical protein
319	 34.17	0	328084..328560	+	158	57866239	-	SERP0323	-	hypothetical protein
320	 30.67	0	328812..329486	-	224	57866240	scdA	SERP0324	-	cell wall biosynthesis protein ScdA
321	 32.64	0	329658..330803	+	381	57866249	-	SERP0325	-	flavohemoprotein, putative
322	 25.57	-1	330790..331008	+	72	57866250	-	SERP0326	-	hypothetical protein
323	 32.49	0	331297..331890	+	197	57866251	-	SERP0327	-	hypothetical protein
324	 32.98	0	331971..332825	+	284	57866252	-	SERP0328	-	LysR family transcriptional regulator
325	 32.42	0	332883..334091	+	402	57866253	-	SERP0329	-	sugar efflux transporter, putative
326	 31.49	0	334098..334586	+	162	57866254	-	SERP0330	-	hypothetical protein
327	 31.01	0	334642..335331	-	229	57866255	-	SERP0331	-	hypothetical protein
328	 31.91	0	335770..336192	+	140	57866256	-	SERP0332	-	putative lipoprotein
329	 29.97	0	336324..336620	+	98	57866257	-	SERP0333	-	hypothetical protein
330	 33.52	0	336746..337294	+	182	57866266	-	SERP0334	-	acetyltransferase
331	 35.80	+1	337593..338159	-	188	57866267	-	SERP0335	-	decarboxylase family protein
332	 34.89	0	338170..338619	-	149	57866268	-	SERP0336	-	hypothetical protein
333	 30.40	0	338622..339302	-	226	57866269	-	SERP0337	-	hypothetical protein
334	 29.25	0	339499..339963	+	154	57866270	-	SERP0338	-	hypothetical protein
335	 32.99	0	340246..341118	-	290	57866271	uppP	SERP0339	-	undecaprenyl pyrophosphate phosphatase
32.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.