IslandPathversion 1.0

IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.10 STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2395	 27.42	-1	2505920..2506105	-	61	57865875	-	SERP2452	-	hypothetical protein
2396	 28.33	-1	2506108..2506887	-	259	57865876	-	SERP2453	-	putative lipoprotein
2397	 27.04	-1	2507320..2508177	-	285	57865877	-	SERP2454	-	hypothetical protein
2398	 26.39	-1	2509031..2509765	-	244	57865878	-	SERP2455	-	hypothetical protein
2399	 26.79	-1	2509762..2511030	-	422	57865879	-	SERP2456	-	hypothetical protein
2400	 28.93	0	2511030..2512052	-	340	57865880	-	SERP2457	-	CRISPR-associated Csm5 family protein
2401	 30.49	0	2512055..2512969	-	304	57865881	-	SERP2458	-	CRISPR-associated Csm4 family protein
2402	 33.80	0	2512974..2513618	-	214	57865882	-	SERP2459	-	CRISPR-associated Cmr4 family protein
2403	 25.32	-1	2513620..2514006	-	128	57865883	-	SERP2460	-	CRISPR-associated Csm2 family protein
2404	 29.07	0	2514048..2516321	-	757	57865884	-	SERP2461	-	CRISPR-associated Csm1 family protein
2405	 28.43	-1	2516334..2516639	-	101	57865885	-	SERP2462	-	CRISPR-associated Cas2 family protein
2406	 26.71	-1	2516639..2517544	-	301	57865886	cas1	SERP2463	-	CRISPR-associated Cas1 family protein
2407	 28.57	0	2518526..2518672	-	48	57865887	-	SERP2464	-	hypothetical protein
2408	 26.92	-1	2518785..2519564	-	259	57865888	-	SERP2465	-	putative lipoprotein
2409	 25.00	-1	2520289..2520420	-	43	57865897	-	SERP2466	-	hypothetical protein
2410	 35.71	0	2520514..2521017	+	167	57865898	-	SERP2467	-	hypothetical protein
2411	 31.98	0	2521032..2521253	+	73	57865899	-	SERP2468	-	hypothetical protein
2412	 36.61	+1	2521511..2522638	-	375	57865900	-	SERP2469	-	alcohol dehydrogenase, zinc-containing
2413	 27.31	-1	2523162..2523659	+	165	57865901	-	SERP2470	-	spermidine N1-acetyltransferase, putative
2414	 27.40	-1	2523971..2525116	-	381	57865902	-	SERP2471	-	type I restriction-modification system S subunit
2415	 34.04	0	2525109..2526665	-	518	57865903	hsdM	SERP2472	-	type I restriction-modification system, M subunit
2416	 32.17	0	2526666..2527352	-	228	57865913	-	SERP2473	-	hypothetical protein
2417	 31.69	0	2527339..2530131	-	930	57865914	hsdR	SERP2474	-	type I restriction-modification system, R subunit
2418	 22.62	-2	2530339..2532159	-	606	57865915	-	SERP2475	-	hypothetical protein
2419	 25.00	-1	2532765..2533448	-	227	57865916	-	SERP2476	-	GTP-binding protein, putative
2420	 27.12	-1	2533580..2534899	-	439	57865917	-	SERP2477	-	hypothetical protein
2421	 24.24	-2	2535278..2536519	-	413	57865918	-	SERP2478	-	hypothetical protein
2422	 31.21	0	2536600..2538108	-	502	57865919	-	SERP2479	-	hypothetical protein
2423	 29.67	0	2538223..2538849	+	208	57865920	-	SERP2480	-	hypothetical protein
2424	 30.56	0	2538939..2539226	+	95	57865921	-	SERP2481	-	hypothetical protein
2425	 27.47	-1	2539394..2539768	+	124	57865931	-	SERP2482	-	hypothetical protein
2426	 36.68	+1	2539968..2540864	+	298	57865932	-	SERP2483	-	hypothetical protein
2427	 33.56	0	2540874..2541743	+	289	57865933	-	SERP2484	-	hypothetical protein
2428	 36.74	+1	2542288..2542845	-	185	57865934	kdpC	SERP2485	-	K+-transporting ATPase, C subunit
2429	 39.76	+2	2542861..2544882	-	673	57865935	kdpB	SERP2486	-	K+-transporting ATPase, B subunit
2430	 36.79	+1	2544901..2546577	-	558	57865936	kdpA	SERP2487	-	potassium-transporting ATPase subunit A
2431	 29.17	0	2546650..2546793	+	47	57865937	-	SERP2488	-	hypothetical protein
2432	 36.63	+1	2546845..2549514	+	889	57865938	kdpD	SERP2489	-	sensor histidine kinase KdpD
2433	 37.36	+1	2549489..2550184	+	231	57865946	kdeP	SERP2490	-	DNA-binding response regulator KdeP
2434	 36.88	+1	2550930..2551832	+	300	57865947	-	SERP2491	-	hypothetical protein
2435	 25.93	-1	2552039..2552173	-	44	57865948	-	SERP2492	-	hypothetical protein
2436	 25.12	-1	2553735..2554781	+	348	57865949	-	SERP2494	-	hypothetical protein
2437	 34.68	0	2554974..2555270	+	98	57865950	-	SERP2495	-	hypothetical protein
2438	 34.06	0	2555270..2557063	+	597	57865951	-	SERP2496	-	hypothetical protein
2439	 31.37	0	2557181..2557282	+	33	57865952	-	SERP2497	-	hypothetical protein
2440	 34.37	0	2557297..2558646	+	449	57865953	-	SERP2498	-	cassette chromosome recombinase A
2441	 35.05	0	2558668..2560296	+	542	57865962	-	SERP2499	-	cassette chromosome recombinase B
2442	 33.33	0	2560476..2560577	+	33	57865963	-	SERP2500	-	hypothetical protein
2443	 34.76	0	2560814..2561164	+	116	57865833	-	SERP2501	-	hypothetical protein
2444	 31.18	0	2561157..2561249	+	30	57865834	-	SERP2502	-	hypothetical protein
2445	 32.05	0	2561251..2561562	+	103	57865835	-	SERP2503	-	hypothetical protein
2446	 36.29	+1	2561580..2562086	+	168	57865836	-	SERP2504	-	hypothetical protein
2447	 33.96	0	2562107..2562424	+	105	57865837	-	SERP2505	-	RadC domain-containing protein
2448	 32.14	0	2562543..2563628	+	361	57865838	tnpA-3	SERP2506	-	transposase A
2449	 33.86	0	2563625..2565517	+	630	57865839	tnpB-3	SERP2507	-	transposase B
2450	 29.89	0	2565524..2565901	+	125	57865840	tnpC-3	SERP2508	-	transposase C
2451	 36.40	+1	2566052..2566834	+	260	57865841	spC	SERP2509	-	streptomycin 3''-adenylyltransferase
2452	 32.51	0	2566960..2567691	-	243	57865851	ermA-3	SERP2510	-	rRNA adenine N-6-methyltransferase
2453	 21.67	-2	2567774..2567833	-	19	57867840	-	SERP2511	-	peptide L
2454	 34.39	0	2568225..2568887	+	220	57865852	-	SERP2512	-	hypothetical protein
2455	 33.02	0	2569226..2569855	-	209	57865853	-	SERP2513	-	hypothetical protein
2456	 24.90	-1	2569870..2570130	-	86	57865854	-	SERP2514	-	hypothetical protein
2457	 32.30	0	2570266..2571330	+	354	57865855	-	SERP2515	-	rhodanese-like domain-containing protein
2458	 29.28	0	2572811..2573920	-	369	57865856	xylR	SERP2517	-	xylose repressor
2459	 25.82	-1	2574115..2574327	-	70	57865857	-	SERP2518	-	hypothetical protein
2460	 25.81	-1	2574428..2574799	-	123	57865866	mecI	SERP2519	-	methicillin-resistance regulatory protein MecI
2461	 28.67	0	2574799..2576556	-	585	57865867	mecR1	SERP2520	-	methicillin-resistance regulatory protein MecR1
2462	 30.59	0	2576656..2578662	+	668	57865868	mecA	SERP2521	-	penicillin-binding protein 2'
2463	 29.14	0	2578708..2579136	-	142	57865869	-	SERP2522	-	MaoC domain-containing protein
2464	 33.47	0	2579233..2579976	-	247	57865870	-	SERP2523	-	glycerophosphoryl diester phosphodiesterase UgpQ, putative
2465	 35.06	0	2580485..2580715	-	76	57867839	-	SERP2524	-	hypothetical protein
2466	 29.17	0	2580813..2580980	-	55	57865871	-	SERP2525	-	HMG-CoA synthase, truncation
2467	 34.37	0	2581238..2581912	+	224	57865872	-	SERP2526	-	IS431mec-like transposase
2468	 24.58	-2	2581944..2582183	-	79	57865889	-	SERP2527	-	hypothetical protein
2469	 28.32	-1	2582598..2583893	-	431	57865890	-	SERP2528	-	hypothetical protein
2470	 36.88	+1	2584176..2584655	-	159	57865891	-	SERP2529	-	hypothetical protein
2471	 38.20	+1	2585697..2586497	-	266	57865892	yycJ	SERP2530	-	metallo-beta-lactamase family protein YycJ
2472	 33.33	0	2587118..2587909	-	263	57865893	yycI	SERP2531	-	yycI protein
2473	 37.07	+1	2587910..2589247	-	445	57865894	yycH	SERP2532	-	yycH protein
2474	 37.86	+1	2589240..2591072	-	610	57865895	yycG	SERP2533	-	sensory box histidine kinase YycG
2475	 36.61	+1	2591085..2591786	-	233	57865896	yycF	SERP2534	-	DNA-binding response regulator YycF
2476	 23.66	-2	2591830..2591922	-	30	57865904	-	SERP2535	-	hypothetical protein
2477	 38.94	+1	2592839..2594122	-	427	57865905	purA	SERP2536	-	adenylosuccinate synthetase
2478	 39.47	+2	2594401..2595801	-	466	57865906	dnaB	SERP2537	-	replicative DNA helicase
2479	 34.23	0	2595972..2596418	-	148	57865907	rplI	SERP2538	-	50S ribosomal protein L9
2480	 36.79	+1	2596415..2598382	-	655	57865908	-	SERP2539	-	DHH family protein
2481	 32.04	0	2598411..2599337	-	308	57865909	-	SERP2540	-	hypothetical protein
2482	 35.91	+1	2599586..2600554	-	322	57865910	-	SERP2541	-	homoserine O-acetyltransferase, putative
2483	 33.03	0	2600843..2601172	-	109	57865911	-	SERP2542	-	hypothetical protein
2484	 36.36	+1	2601169..2601861	-	230	57865912	-	SERP2543	-	azlC protein, putative
2485	 33.73	0	2602224..2603228	+	334	57865922	hlb	SERP2544	-	beta-hemolysin
2486	 34.73	0	2603756..2605042	-	428	57865923	serS	SERP2545	-	seryl-tRNA synthetase
2487	 40.86	+2	2605087..2605179	+	30	57865924	-	SERP2546	-	hypothetical protein
2488	 37.50	+1	2605887..2606702	+	271	57865925	-	SERP2547	-	YjeF-related protein
2489	 36.84	+1	2607094..2609775	-	893	57865926	gyrA	SERP2548	-	DNA gyrase, A subunit
2490	 37.01	+1	2609812..2611743	-	643	57865927	gyrB	SERP2549	-	DNA gyrase, B subunit
2491	 34.68	0	2611754..2612869	-	371	57865928	recF	SERP2550	-	recombination protein F
2492	 35.44	0	2612866..2613102	-	78	57865929	-	SERP2551	-	hypothetical protein
2493	 31.83	0	2613533..2614666	-	377	57865930	dnaN	SERP2552	-	DNA polymerase III subunit beta
2494	 33.63	0	2614976..2616331	-	451	57865939	dnaA	SERP2553	-	chromosomal replication initiation protein
32.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.