IslandPathversion 1.0

IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.10 STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2303	 35.19	0	2401241..2401888	-	215	57865706	-	SERP2355	-	amino acid ABC transporter, permease protein
2304	 35.10	0	2401891..2402850	-	319	57865715	-	SERP2356	-	amino acid ABC transporter, amino acid-binding protein
2305	 33.49	0	2402869..2403504	-	211	57865716	-	SERP2357	-	amino acid ABC transporter, permease protein
2306	 35.19	0	2403501..2404688	-	395	57865717	-	SERP2358	-	amino acid ABC transporter, ATP-binding protein
2307	 33.54	0	2404823..2405311	-	162	57865718	-	SERP2359	-	hypothetical protein
2308	 37.89	+1	2405308..2406273	-	321	57865719	-	SERP2360	-	3-hydroxyacyl-CoA dehydrogenase family protein
2309	 38.46	+1	2406273..2407169	-	298	57865720	-	SERP2361	-	hypothetical protein
2310	 36.11	+1	2407305..2407844	-	179	57865721	-	SERP2362	-	TetR family transcriptional regulator
2311	 33.92	0	2408310..2409668	-	452	57865730	brnQ-2	SERP2363	-	branched-chain amino acid transport system II carrier protein
2312	 35.06	0	2410022..2411239	+	405	57865731	-	SERP2364	-	succinyl-diaminopimelate desuccinylase
2313	 34.92	0	2411378..2412133	-	251	57865732	pflA	SERP2365	-	pyruvate formate-lyase-activating enzyme
2314	 35.96	+1	2412155..2414401	-	748	57865733	pflB	SERP2366	-	formate acetyltransferase
2315	 35.26	0	2415142..2416332	-	396	57865734	-	SERP2367	-	transporter, putative
2316	 34.53	0	2416344..2417093	-	249	57865735	-	SERP2368	-	peptide ABC transporter, ATP-binding protein
2317	 34.80	0	2417086..2417901	-	271	57865736	-	SERP2369	-	peptide ABC transporter, ATP-binding protein
2318	 37.43	+1	2417888..2418766	-	292	57865744	-	SERP2370	-	peptide ABC transporter, permease protein
2319	 35.47	0	2418763..2419698	-	311	57865745	-	SERP2371	-	peptide ABC transporter, permease protein, putative
2320	 34.15	0	2419711..2421309	-	532	57865746	-	SERP2372	-	peptide ABC transporter, peptide-binding protein
2321	 34.88	0	2421360..2422652	-	430	57865747	-	SERP2373	-	hypothetical protein
2322	 35.29	0	2422645..2423460	-	271	57865748	-	SERP2374	-	hypothetical protein
2323	 36.19	+1	2423457..2424296	-	279	57865749	-	SERP2375	-	diaminopimelate epimerase family protein
2324	 23.53	-2	2424381..2424482	+	33	57865750	-	SERP2376	-	hypothetical protein
2325	 30.20	0	2424484..2424930	+	148	57865751	-	SERP2377	-	hypothetical protein
2326	 31.01	0	2424945..2425634	+	229	57865759	-	SERP2378	-	ABC transporter, ATP-binding protein
2327	 35.27	0	2425762..2426535	-	257	57865760	-	SERP2379	-	short chain dehydrogenase/reductase family oxidoreductase
2328	 34.20	0	2426704..2428080	-	458	57865761	-	SERP2380	-	drug transporter, putative
2329	 37.21	+1	2428109..2431126	-	1005	57865762	-	SERP2381	-	NADH:flavin oxidoreductase/fumarate reductase, flavoprotein subunit, putative
2330	 33.99	0	2431209..2432126	-	305	57865763	-	SERP2382	-	ApbE family protein
2331	 30.72	0	2432528..2433523	-	331	57865764	-	SERP2383	-	ABC transporter, substrate-binding protein
2332	 36.13	+1	2433780..2434886	+	368	57865765	-	SERP2384	-	hypothetical protein
2333	 34.49	0	2434880..2436262	+	460	57865773	-	SERP2385	-	hypothetical protein
2334	 35.03	0	2436232..2437113	+	293	57865774	-	SERP2386	-	cobalamin synthesis protein, putative
2335	 35.87	+1	2438258..2440189	-	643	57865775	geh-2	SERP2388	-	lipase
2336	 27.50	-1	2440410..2440529	+	39	57865776	-	SERP2389	-	hypothetical protein
2337	 33.00	0	2440678..2441865	+	395	57865777	sspB	SERP2390	-	cysteine protease precursor SspB
2338	 27.36	-1	2441883..2442200	+	105	57865778	sspC	SERP2391	-	SspC protein
2339	 37.76	+1	2442370..2449578	-	2402	57865779	bhp	SERP2392	-	cell wall associated biofilm protein
2340	 31.73	0	2449900..2450586	-	228	57865788	bioW	SERP2393	-	6-carboxyhexanoate--CoA ligase
2341	 31.57	0	2450579..2451712	-	377	57865789	-	SERP2394	-	aminotransferase, class II
2342	 34.07	0	2451723..2453078	-	451	57865790	bioA	SERP2395	-	adenosylmethionine--8-amino-7-oxononanoate aminotransferase
2343	 34.82	0	2453071..2453742	-	223	57865791	bioD	SERP2396	-	dethiobiotin synthase
2344	 39.87	+2	2454081..2454233	-	50	57865792	-	SERP2397	-	phenol soluble modulin beta 1
2345	 41.17	+2	2454490..2461683	-	2397	57865793	aap	SERP2398	-	accumulation associated protein
2346	 12.12	-2	2461814..2461912	+	32	57865794	-	SERP2399	-	hypothetical protein
2347	 39.22	+1	2462102..2462254	-	50	57865795	-	SERP2400	-	phenol soluble modulin beta 1
2348	 33.20	0	2462460..2463194	-	244	57865802	-	SERP2401	-	serine protease
2349	 19.14	-2	2463271..2463432	+	53	57865803	-	SERP2402	-	hypothetical protein
2350	 23.68	-2	2463875..2464216	+	113	57865804	-	SERP2403	-	hypothetical protein
2351	 36.21	+1	2464409..2465383	+	324	57865805	-	SERP2404	-	iron compound ABC transporter, iron compound-binding protein, putative
2352	 34.57	0	2465380..2466918	+	512	57865806	-	SERP2405	-	sensor histidine kinase
2353	 33.47	0	2466930..2467685	+	251	57865807	-	SERP2406	-	AraC family DNA-binding response regulator
2354	 30.51	0	2469380..2469874	+	164	57865808	-	SERP2408	-	hypothetical protein
2355	 37.96	+1	2471339..2471446	-	35	57865818	-	SERP2410	-	hypothetical protein
2356	 35.42	0	2471753..2472520	-	255	57865819	-	SERP2411	-	short chain dehydrogenase/reductase family oxidoreductase
2357	 33.87	0	2473294..2474778	-	494	57865820	mqo-4	SERP2412	-	malate:quinone oxidoreductase
2358	 40.57	+2	2474977..2475957	+	326	57865821	-	SERP2413	-	hypothetical protein
2359	 30.00	0	2476275..2476634	+	119	57865822	-	SERP2414	-	putative lipoprotein
2360	 28.12	-1	2476845..2476940	+	31	57865823	-	SERP2415	-	hypothetical protein
2361	 26.50	-1	2477064..2477180	-	38	57865824	-	SERP2416	-	hypothetical protein
2362	 30.07	0	2477247..2478104	-	285	57865812	-	SERP2417	-	putative lipoprotein
2363	 29.93	0	2478690..2479100	+	136	57865813	-	SERP2418	-	hypothetical protein
2364	 25.27	-1	2479343..2479528	-	61	57865814	-	SERP2419	-	hypothetical protein
2365	 36.18	+1	2479838..2480083	-	81	57865815	-	SERP2420	-	hypothetical protein
2366	 31.08	0	2480169..2481056	-	295	57865816	-	SERP2421	-	hypothetical protein
2367	 28.75	0	2481410..2482195	-	261	57865817	-	SERP2422	-	putative lipoprotein
2368	 27.31	-1	2482536..2483315	-	259	57865825	-	SERP2423	-	putative lipoprotein
2369	 27.13	-1	2483570..2483698	-	42	57865826	-	SERP2424	-	hypothetical protein
2370	 31.64	0	2483712..2484596	-	294	57865827	-	SERP2425	-	hypothetical protein
2371	 25.85	-1	2484684..2484977	-	97	57865828	-	SERP2426	-	ArsR family transcriptional regulator
2372	 31.90	0	2485525..2485872	+	115	57865829	arsD	SERP2427	-	arsenical resistance operon trans-acting repressor
2373	 30.09	0	2485886..2487583	+	565	57865830	arsA	SERP2428	-	arsenical pump-driving ATPase
2374	 30.16	0	2487733..2488047	+	104	57865831	arsR-2	SERP2429	-	arsenical resistance operon repressor
2375	 32.48	0	2488050..2489339	+	429	57865832	arsB	SERP2430	-	arsenical pump membrane protein
2376	 35.61	0	2489358..2489753	+	131	57865842	arsC-2	SERP2431	-	arsenate reductase
2377	 29.78	0	2489814..2490572	-	252	57865843	-	SERP2432	-	hypothetical protein
2378	 28.74	0	2490569..2490829	-	86	57865844	-	SERP2433	-	hypothetical protein
2379	 31.19	0	2490968..2492038	+	356	57865845	-	SERP2434	-	rhodanese-like domain-containing protein
2380	 33.18	0	2492057..2493385	+	442	57865846	-	SERP2435	-	metallo-beta-lactamase family protein
2381	 23.08	-2	2493466..2493582	-	38	57865847	-	SERP2436	-	hypothetical protein
2382	 32.05	0	2493858..2494403	-	181	57865848	-	SERP2437	-	putative lipoprotein
2383	 33.91	0	2494421..2496484	-	687	57865849	-	SERP2438	-	cation transporter E1-E2 family ATPase
2384	 31.31	0	2496907..2497350	-	147	57865850	-	SERP2439	-	hypothetical protein
2385	 32.89	0	2497936..2499297	-	453	57865858	-	SERP2441	-	transporter, putative
2386	 28.10	-1	2499425..2499577	+	50	57865859	-	SERP2442	-	hypothetical protein
2387	 29.79	0	2499631..2500392	-	253	57865860	-	SERP2443	-	putative lipoprotein
2388	 25.81	-1	2500623..2500715	-	30	57865861	-	SERP2444	-	hypothetical protein
2389	 27.23	-1	2500712..2501497	-	261	57865862	-	SERP2445	-	putative lipoprotein
2390	 29.60	0	2501711..2502058	-	115	57865863	-	SERP2446	-	PenN domain-containing protein
2391	 27.17	-1	2502065..2502826	-	253	57865864	-	SERP2447	-	putative lipoprotein
2392	 30.82	0	2502918..2503196	-	92	57865865	-	SERP2448	-	hypothetical protein
2393	 25.99	-1	2503206..2503532	-	108	57865873	-	SERP2449	-	hypothetical protein
2394	 27.08	-1	2504912..2505694	-	260	57865874	-	SERP2451	-	putative lipoprotein
2395	 27.42	-1	2505920..2506105	-	61	57865875	-	SERP2452	-	hypothetical protein
2396	 28.33	-1	2506108..2506887	-	259	57865876	-	SERP2453	-	putative lipoprotein
2397	 27.04	-1	2507320..2508177	-	285	57865877	-	SERP2454	-	hypothetical protein
2398	 26.39	-1	2509031..2509765	-	244	57865878	-	SERP2455	-	hypothetical protein
2399	 26.79	-1	2509762..2511030	-	422	57865879	-	SERP2456	-	hypothetical protein
2400	 28.93	0	2511030..2512052	-	340	57865880	-	SERP2457	-	CRISPR-associated Csm5 family protein
2401	 30.49	0	2512055..2512969	-	304	57865881	-	SERP2458	-	CRISPR-associated Csm4 family protein
2402	 33.80	0	2512974..2513618	-	214	57865882	-	SERP2459	-	CRISPR-associated Cmr4 family protein
32.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.