IslandPathversion 1.0

IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.10 STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
186	 34.19	0	198598..199767	-	389	57866149	-	SERP0190	-	amidohydrolase family protein
187	 31.76	0	200341..200850	+	169	57866150	-	SERP0191	-	acetyltransferase
188	 33.33	0	201102..202052	+	316	57866151	-	SERP0192	-	ornithine cyclodeaminase
189	 24.29	-2	202140..202349	-	69	57866152	-	SERP0193	-	hypothetical protein
190	 33.75	0	202608..203564	+	318	57866153	-	SERP0194	-	UDP-glucose 4-epimerase, putative
191	 35.75	0	204021..205097	+	358	57866162	ilvE	SERP0195	-	branched-chain amino acid aminotransferase
192	 30.96	0	205369..206085	+	238	57866163	ispD	SERP0196	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
193	 30.04	0	206078..207109	+	343	57866164	-	SERP0197	-	alcohol dehydrogenase, zinc-containing
194	 27.20	-1	207126..208820	+	564	57866165	-	SERP0198	-	teichoic acid biosynthesis protein, putative
195	 36.06	+1	209189..209884	+	231	57866166	-	SERP0199	-	HAD superfamily hydrolase
196	 35.63	0	209974..211278	-	434	57866167	-	SERP0200	-	hypothetical protein
197	 34.40	0	211327..212079	-	250	57866168	fabG	SERP0201	-	3-ketoacyl-(acyl-carrier-protein) reductase
198	 33.48	0	212435..213097	-	220	57866178	-	SERP0202	-	deoxynucleoside kinase family protein
199	 26.86	-1	213090..213707	-	205	57866179	-	SERP0203	-	deoxynucleoside kinase family protein
200	 38.26	+1	213774..214280	+	168	57866115	-	SERP0204	-	cytidine/deoxycytidylate deaminase family protein
201	 32.88	0	214448..215326	+	292	57866123	-	SERP0205	-	HAD superfamily hydrolase
202	 34.74	0	215331..215897	+	188	57866124	-	SERP0206	-	azoreductase
203	 33.30	0	216458..219136	+	892	57866125	-	SERP0207	-	sdrG protein
204	 29.74	0	219501..221003	-	500	57866126	-	SERP0208	-	glycosyl transferase, group 1 family protein
205	 34.84	0	221374..221772	-	132	57866127	arsC-1	SERP0209	-	arsenate reductase
206	 31.79	0	221788..223080	-	430	57866128	-	SERP0210	-	arsenical pump membrane protein
207	 28.62	0	223077..223394	-	105	57866129	arsR-1	SERP0211	-	arsenical resistance operon repressor
208	 33.33	0	223538..224416	-	292	57866138	-	SERP0212	-	putative GTP cyclohydrolase
209	 38.29	+1	224430..225095	-	221	57866139	-	SERP0213	-	hypothetical protein
210	 34.16	0	225111..225473	-	120	57866140	-	SERP0214	-	hypothetical protein
211	 33.33	0	225758..226489	+	243	57866141	nagB	SERP0215	-	glucosamine-6-phosphate isomerase
212	 35.39	0	226611..227243	+	210	57866142	-	SERP0216	-	hexulose-6-phosphate synthase, putative
213	 33.70	0	227245..227793	+	182	57866143	-	SERP0217	-	SIS domain-containing protein
214	 29.01	0	227914..228561	+	215	57866144	-	SERP0218	-	HAD superfamily hydrolase
215	 32.16	0	228679..230040	+	453	57866145	-	SERP0219	-	long chain fatty acid CoA ligase, putative
216	 37.08	+1	230043..231191	+	382	57866154	-	SERP0220	-	acetyl-CoA acetyltransferase, putative
217	 27.55	-1	231157..231519	+	120	57866155	-	SERP0221	-	hypothetical protein
218	 25.67	-1	231523..231783	+	86	57866156	-	SERP0222	-	hypothetical protein
219	 32.11	0	231998..233392	+	464	57866157	-	SERP0223	-	major facilitator family transporter
220	 29.44	0	233685..233864	-	59	57866158	-	SERP0224	-	hypothetical protein
221	 31.41	0	234297..234452	+	51	57866159	-	SERP0225	-	truncated IS1272 transposase
222	 36.69	+1	234682..235515	-	277	57866160	thiD-1	SERP0226	-	phosphomethylpyrimidine kinase
223	 31.60	0	235619..236599	-	326	57866161	-	SERP0227	-	penicillin V acylase, putative
224	 34.41	0	236766..237416	+	216	57866169	ung	SERP0228	-	uracil-DNA glycosylase
225	 30.83	0	237426..237785	+	119	57866170	-	SERP0229	-	hypothetical protein
226	 33.87	0	237807..238178	+	123	57866171	-	SERP0230	-	hypothetical protein
227	 30.11	0	238162..238254	-	30	57866172	-	SERP0231	-	hypothetical protein
228	 34.41	0	238294..239784	+	496	57866173	-	SERP0232	-	amino acid permease family protein
229	 35.76	+1	239945..240397	-	150	57866174	-	SERP0233	-	hypothetical protein
230	 35.82	+1	240410..241174	-	254	57866175	-	SERP0234	-	hypothetical protein
231	 32.80	0	241677..242426	-	249	57866176	-	SERP0235	-	putative heme peroxidase
232	 36.46	+1	242597..243586	+	329	57866177	eutD	SERP0236	-	phosphotransacetylase
233	 35.12	0	243586..244425	+	279	57866186	-	SERP0237	-	lipoate-protein ligase A family protein
234	 38.11	+1	245118..246038	+	306	57866187	mvk	SERP0238	-	mevalonate kinase
235	 36.08	+1	246043..247026	+	327	57866188	mvaD	SERP0239	-	mevalonate diphosphate decarboxylase
236	 34.91	0	247039..248115	+	358	57866189	-	SERP0240	-	phosphomevalonate kinase
237	 34.21	0	248326..248667	+	113	57866190	-	SERP0241	-	hypothetical protein
238	 32.81	0	249056..250387	-	443	57866191	-	SERP0242	-	pyridine nucleotide-disulfide oxidoreductase family protein
239	 31.91	0	250392..250814	-	140	57866192	-	SERP0243	-	hypothetical protein
240	 33.76	0	250971..251909	+	312	57866193	-	SERP0244	-	aldo/keto reductase family oxidoreductase
241	 34.60	0	252370..255051	+	893	57866201	-	SERP0245	-	transporter, putative
242	 35.13	0	255075..256019	+	314	57866202	-	SERP0246	-	ABC transporter, substrate-binding protein, putative
243	 31.93	0	256369..256938	+	189	57866203	-	SERP0247	-	transcriptional regulator, putative
244	 28.57	0	256979..257083	-	34	57866204	-	SERP0248	-	hypothetical protein
245	 34.22	0	257149..257823	+	224	57866205	-	SERP0249	-	IS431mec-like transposase
246	 32.91	0	258272..258748	+	158	57866206	-	SERP0250	-	acetyltransferase
247	 31.64	0	258840..260138	+	432	57866207	-	SERP0251	-	HD domain-containing protein
248	 34.69	0	260186..260701	+	171	57866208	-	SERP0252	-	hypothetical protein
249	 35.02	0	260788..261975	-	395	57866209	-	SERP0253	-	hypothetical protein
250	 36.29	+1	261972..262748	-	258	57866226	-	SERP0254	-	AIR carboxylase, putative
251	 33.57	0	262763..263590	-	275	57866227	-	SERP0255	-	hypothetical protein
252	 33.88	0	263610..264884	-	424	57866228	-	SERP0256	-	hypothetical protein
253	 38.61	+1	265167..266189	+	340	57866229	-	SERP0257	-	alcohol dehydrogenase
254	 23.66	-2	266272..266664	+	130	57866230	-	SERP0258	-	hypothetical protein
255	 22.52	-2	266777..266887	+	36	57866231	-	SERP0259	-	hypothetical protein
256	 33.33	0	267446..268459	+	337	57866232	-	SERP0260	-	ISSep1-like transposase
257	 30.26	0	268675..269130	+	151	57866241	-	SERP0261	-	hypothetical protein
258	 34.54	0	269127..270788	+	553	57866242	argS	SERP0262	-	arginyl-tRNA synthetase
259	 30.66	0	271030..271665	+	211	57866243	-	SERP0263	-	endonuclease III, putative
260	 27.62	-1	271720..272472	+	250	57866244	-	SERP0264	-	MerR family transcriptional regulator
261	 40.87	+2	272481..272732	+	83	57866245	-	SERP0265	-	hypothetical protein
262	 31.19	0	272919..273806	+	295	57866246	-	SERP0266	-	iron compound ABC transporter, iron compound-binding protein, putative
263	 32.91	0	274083..275027	+	314	57866247	-	SERP0267	-	iron compound ABC transporter, permease protein
264	 31.69	0	275086..275814	+	242	57866248	-	SERP0268	-	HAD superfamily hydrolase
265	 34.09	0	275792..276589	+	265	57866258	-	SERP0269	-	alpha/beta fold family hydrolase
266	 30.39	0	276794..277303	+	169	57866259	-	SERP0270	-	hypothetical protein
267	 21.95	-2	277340..277462	+	40	57866260	-	SERP0271	-	hypothetical protein
268	 28.06	-1	277548..278267	+	239	57866261	-	SERP0272	-	hypothetical protein
269	 30.24	0	278475..279251	+	258	57866262	-	SERP0273	-	alpha/beta fold family hydrolase
270	 26.13	-1	279424..279798	-	124	57866263	sarA	SERP0274	-	accessory regulator A
271	 26.52	-1	280211..281164	-	317	57866264	-	SERP0275	-	hypothetical protein
272	 31.99	0	281490..282383	-	297	57866265	-	SERP0276	-	hypothetical protein
273	 22.86	-2	282382..282486	+	34	57866274	-	SERP0277	-	hypothetical protein
274	 27.21	-1	282518..282664	+	48	57866275	-	SERP0278	-	hypothetical protein
275	 26.22	-1	282773..282997	-	74	57866276	-	SERP0279	-	hypothetical protein
276	 32.37	0	283013..283219	-	68	57866277	-	SERP0280	-	hypothetical protein
277	 33.08	0	283943..286345	+	800	57866278	-	SERP0281	-	putative monovalent cation/H+ antiporter subunit A
278	 32.39	0	286332..286757	+	141	57866279	-	SERP0282	-	putative monovalent cation/H+ antiporter subunit B
279	 29.86	0	286754..287098	+	114	57866280	-	SERP0283	-	putative monovalent cation/H+ antiporter subunit C
280	 33.87	0	287091..288590	+	499	57866281	-	SERP0284	-	putative monovalent cation/H+ antiporter subunit D
281	 27.74	-1	288587..289069	+	160	57866290	-	SERP0285	-	putative monovalent cation/H+ antiporter subunit E
282	 34.32	0	289066..289368	+	100	57866291	-	SERP0286	-	putative monovalent cation/H+ antiporter subunit F
283	 31.40	0	289343..289807	+	154	57866292	-	SERP0287	-	putative monovalent cation/H+ antiporter subunit G
284	 30.56	0	290114..290221	+	35	57866180	-	SERP0288	-	hypothetical protein
285	 34.02	0	290256..292295	+	679	57866181	-	SERP0289	-	Na+/H+ antiporter, putative
32.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.