IslandPathversion 1.0

IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.10 STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2232	 27.80	-1	2322337..2323638	-	433	57865711	-	SERP2282	-	hypothetical protein
2233	 34.44	0	2323914..2324729	-	271	57865712	-	SERP2283	-	phosphonate ABC transporter, permease protein
2234	 34.96	0	2324726..2325526	-	266	57865713	-	SERP2284	-	phosphonate ABC transporter, permease protein
2235	 35.40	0	2325528..2326301	-	257	57865714	-	SERP2285	-	phosphonate ABC transporter, ATP-binding protein
2236	 31.97	0	2326415..2327371	-	318	57865722	-	SERP2286	-	phosphonate ABC transporter, phosphonate-binding protein
2237	 35.46	0	2327606..2329156	+	516	57865723	-	SERP2287	-	hypothetical protein
2238	 33.14	0	2329253..2330788	+	511	57865724	-	SERP2288	-	5'-nucleotidase family protein
2239	 32.40	0	2330888..2332063	-	391	57865725	-	SERP2289	-	transporter, putative
2240	 25.44	-1	2332514..2332627	+	37	57865726	-	SERP2290	-	hypothetical protein
2241	 17.59	-2	2333271..2333378	+	35	57865727	-	SERP2291	-	hypothetical protein
2242	 28.49	0	2333498..2334055	-	185	57865728	icaR	SERP2292	-	intercellular adhesion regulator
2243	 33.01	0	2334220..2335458	+	412	57865729	icaA	SERP2293	-	N-glycosyltransferase PgaC
2244	 30.72	0	2335422..2335727	+	101	57865737	icaD	SERP2294	-	intercellular adhesion protein D
2245	 30.57	0	2335724..2336593	+	289	57865738	icaB	SERP2295	-	intercellular adhesion protein B
2246	 27.06	-1	2336580..2337647	+	355	57865739	icaC	SERP2296	-	intercellular adhesion protein C
2247	 34.25	0	2337843..2339909	-	688	57865740	geh-1	SERP2297	-	lipase
2248	 26.95	-1	2339963..2340103	+	46	57865741	-	SERP2298	-	hypothetical protein
2249	 31.55	0	2340315..2341100	+	261	57865742	-	SERP2299	-	N-acetyltransferase family protein
2250	 34.43	0	2341209..2341844	-	211	57865743	hisIE	SERP2300	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2251	 35.70	0	2341841..2342599	-	252	57865752	hisF	SERP2301	-	imidazoleglycerol phosphate synthase, cyclase subunit
2252	 33.90	0	2342596..2343300	-	234	57865753	hisA	SERP2302	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2253	 35.41	0	2343293..2343871	-	192	57865754	hisH	SERP2303	-	imidazole glycerol phosphate synthase subunit HisH
2254	 33.68	0	2343868..2344446	-	192	57865755	hisB	SERP2304	-	imidazoleglycerol-phosphate dehydratase
2255	 35.98	+1	2344562..2345806	-	414	57865756	hisD	SERP2305	-	histidinol dehydrogenase
2256	 33.66	0	2345799..2346413	-	204	57865757	hisG	SERP2306	-	ATP phosphoribosyltransferase catalytic subunit
2257	 30.87	0	2346438..2347250	-	270	57865758	hisZ	SERP2307	-	ATP phosphoribosyltransferase regulatory subunit
2258	 32.61	0	2347487..2347903	-	138	57865766	-	SERP2308	-	hypothetical protein
2259	 28.22	-1	2348006..2348416	+	136	57865767	-	SERP2309	-	AsnC family transcriptional regulator
2260	 31.79	0	2349132..2349650	-	172	57865768	-	SERP2311	-	acetyltransferase
2261	 35.34	0	2350001..2351497	+	498	57865769	mqo-3	SERP2312	-	malate:quinone oxidoreductase
2262	 23.81	-2	2352266..2352370	-	34	57865770	-	SERP2313	-	hypothetical protein
2263	 31.01	0	2352715..2353230	+	171	57865771	-	SERP2314	-	hypothetical protein
2264	 34.46	0	2353490..2354467	-	325	57865772	drp35	SERP2315	-	drp35 protein
2265	 34.68	0	2354749..2355711	+	320	57865780	-	SERP2316	-	hypothetical protein
2266	 35.99	+1	2355905..2356543	+	212	57865781	pcp	SERP2317	-	pyrrolidone-carboxylate peptidase
2267	 32.82	0	2356576..2356968	-	130	57865782	-	SERP2318	-	hypothetical protein
2268	 24.84	-1	2356984..2357136	-	50	57865783	-	SERP2319	-	hypothetical protein
2269	 33.90	0	2357317..2358909	+	530	57865784	-	SERP2320	-	choline/carnitine/betaine transporter
2270	 32.16	0	2359074..2359586	-	170	57865785	-	SERP2321	-	immunodominant antigen B, putative
2271	 29.63	0	2359691..2359798	+	35	57865786	-	SERP2322	-	hypothetical protein
2272	 32.05	0	2359862..2360017	-	51	57865787	-	SERP2323	-	truncated IS1272 transposase
2273	 37.79	+1	2360269..2361546	-	425	57865796	-	SERP2324	-	branched-chain alpha-keto acid dehydrogenase subunit E2
2274	 39.58	+2	2361560..2362600	-	346	57865797	-	SERP2325	-	acetoin dehydrogenase, E1 component, beta subunit
2275	 36.90	+1	2362671..2363624	-	317	57865798	-	SERP2326	-	acetoin dehydrogenase, E1 component, alpha subunit
2276	 37.10	+1	2363666..2365018	-	450	57865799	-	SERP2327	-	acetoin dehydrogenase, E3 component, dihydrolipoamide dehydrogenase
2277	 38.20	+1	2365343..2366761	+	472	57865800	-	SERP2328	-	anion transporter family protein
2278	 24.51	-2	2366772..2366873	-	33	57865801	-	SERP2329	-	hypothetical protein
2279	 33.77	0	2367078..2367989	+	303	57865809	-	SERP2330	-	thiamine biosynthesis protein, putative
2280	 33.00	0	2368097..2369002	-	301	57865810	rarD	SERP2331	-	rarD protein
2281	 30.56	0	2369134..2369637	-	167	57865811	-	SERP2332	-	hypothetical protein
2282	 36.33	+1	2369726..2371429	-	567	57865670	-	SERP2333	-	hypothetical protein
2283	 36.24	+1	2371584..2372924	-	446	57865671	-	SERP2334	-	major facilitator superfamily protein
2284	 19.79	-2	2372970..2373065	+	31	57865672	-	SERP2335	-	hypothetical protein
2285	 34.93	0	2373203..2375389	-	728	57865673	-	SERP2336	-	lipase, putative
2286	 31.57	0	2375760..2376383	-	207	57865674	-	SERP2337	-	4-phosphopantetheinyl transferase family protein
2287	 33.24	0	2376393..2383556	-	2387	57865675	-	SERP2338	-	peptide synthetase
2288	 30.19	0	2383754..2384995	-	413	57865676	-	SERP2339	-	drug transporter, putative
2289	 35.10	0	2385517..2386935	-	472	57865685	-	SERP2340	-	EmrB/QacA family drug resistance transporter
2290	 34.14	0	2387496..2387744	-	82	57865686	-	SERP2341	-	hypothetical protein
2291	 32.30	0	2388076..2389524	+	482	57865687	-	SERP2342	-	drug transporter, putative
2292	 35.73	0	2389604..2389978	-	124	57865688	-	SERP2343	-	hypothetical protein
2293	 34.20	0	2389982..2390557	-	191	57865689	-	SERP2344	-	DAK2 domain-containing protein
2294	 36.76	+1	2390612..2391574	-	320	57865690	-	SERP2345	-	dihydroxyacetone kinase family protein
2295	 34.96	0	2391590..2392693	-	367	57865691	gldA	SERP2346	-	glycerol dehydrogenase
2296	 34.47	0	2392998..2393963	-	321	57865692	bioB	SERP2347	-	biotin synthase
2297	 29.60	0	2395235..2395663	-	142	57865700	fosB	SERP2349	-	fosfomycin resistance protein FosB
2298	 29.33	0	2395767..2395991	-	74	57865701	-	SERP2350	-	hypothetical protein
2299	 36.53	+1	2396476..2397477	+	333	57865702	arcB-2	SERP2351	-	ornithine carbamoyltransferase
2300	 37.41	+1	2397500..2398432	+	310	57865703	arcC	SERP2352	-	carbamate kinase
2301	 37.23	+1	2398597..2400162	+	521	57865704	-	SERP2353	-	hypothetical protein
2302	 32.94	0	2400433..2401200	-	255	57865705	-	SERP2354	-	tributyrin esterase EstA, putative
2303	 35.19	0	2401241..2401888	-	215	57865706	-	SERP2355	-	amino acid ABC transporter, permease protein
2304	 35.10	0	2401891..2402850	-	319	57865715	-	SERP2356	-	amino acid ABC transporter, amino acid-binding protein
2305	 33.49	0	2402869..2403504	-	211	57865716	-	SERP2357	-	amino acid ABC transporter, permease protein
2306	 35.19	0	2403501..2404688	-	395	57865717	-	SERP2358	-	amino acid ABC transporter, ATP-binding protein
2307	 33.54	0	2404823..2405311	-	162	57865718	-	SERP2359	-	hypothetical protein
2308	 37.89	+1	2405308..2406273	-	321	57865719	-	SERP2360	-	3-hydroxyacyl-CoA dehydrogenase family protein
2309	 38.46	+1	2406273..2407169	-	298	57865720	-	SERP2361	-	hypothetical protein
2310	 36.11	+1	2407305..2407844	-	179	57865721	-	SERP2362	-	TetR family transcriptional regulator
2311	 33.92	0	2408310..2409668	-	452	57865730	brnQ-2	SERP2363	-	branched-chain amino acid transport system II carrier protein
2312	 35.06	0	2410022..2411239	+	405	57865731	-	SERP2364	-	succinyl-diaminopimelate desuccinylase
2313	 34.92	0	2411378..2412133	-	251	57865732	pflA	SERP2365	-	pyruvate formate-lyase-activating enzyme
2314	 35.96	+1	2412155..2414401	-	748	57865733	pflB	SERP2366	-	formate acetyltransferase
2315	 35.26	0	2415142..2416332	-	396	57865734	-	SERP2367	-	transporter, putative
2316	 34.53	0	2416344..2417093	-	249	57865735	-	SERP2368	-	peptide ABC transporter, ATP-binding protein
2317	 34.80	0	2417086..2417901	-	271	57865736	-	SERP2369	-	peptide ABC transporter, ATP-binding protein
2318	 37.43	+1	2417888..2418766	-	292	57865744	-	SERP2370	-	peptide ABC transporter, permease protein
2319	 35.47	0	2418763..2419698	-	311	57865745	-	SERP2371	-	peptide ABC transporter, permease protein, putative
2320	 34.15	0	2419711..2421309	-	532	57865746	-	SERP2372	-	peptide ABC transporter, peptide-binding protein
2321	 34.88	0	2421360..2422652	-	430	57865747	-	SERP2373	-	hypothetical protein
2322	 35.29	0	2422645..2423460	-	271	57865748	-	SERP2374	-	hypothetical protein
2323	 36.19	+1	2423457..2424296	-	279	57865749	-	SERP2375	-	diaminopimelate epimerase family protein
2324	 23.53	-2	2424381..2424482	+	33	57865750	-	SERP2376	-	hypothetical protein
2325	 30.20	0	2424484..2424930	+	148	57865751	-	SERP2377	-	hypothetical protein
2326	 31.01	0	2424945..2425634	+	229	57865759	-	SERP2378	-	ABC transporter, ATP-binding protein
2327	 35.27	0	2425762..2426535	-	257	57865760	-	SERP2379	-	short chain dehydrogenase/reductase family oxidoreductase
2328	 34.20	0	2426704..2428080	-	458	57865761	-	SERP2380	-	drug transporter, putative
2329	 37.21	+1	2428109..2431126	-	1005	57865762	-	SERP2381	-	NADH:flavin oxidoreductase/fumarate reductase, flavoprotein subunit, putative
2330	 33.99	0	2431209..2432126	-	305	57865763	-	SERP2382	-	ApbE family protein
2331	 30.72	0	2432528..2433523	-	331	57865764	-	SERP2383	-	ABC transporter, substrate-binding protein
32.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.