IslandPathversion 1.0

IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.10 STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2183	 31.28	0	2260878..2261120	-	80	57865629	-	SERP2228	-	hypothetical protein
2184	 34.42	0	2261856..2262131	+	91	57865630	-	SERP2230	-	hypothetical protein
2185	 30.61	0	2262635..2263774	-	379	57865639	-	SERP2232	-	major facilitator superfamily protein
2186	 24.82	-1	2263927..2264748	+	273	57865640	-	SERP2233	-	LysR family transcriptional regulator
2187	 28.96	0	2265275..2266006	+	243	57865641	-	SERP2234	-	hypothetical protein
2188	 39.58	+2	2266163..2266258	+	31	57865642	-	SERP2235	-	hypothetical protein
2189	 25.67	-1	2266411..2267010	+	199	57865643	-	SERP2236	-	hypothetical protein
2190	 30.21	0	2267485..2267580	-	31	57865644	-	SERP2238	-	hypothetical protein
2191	 28.78	0	2268146..2268628	-	160	57865653	-	SERP2240	-	IS200 family transposase
2192	 32.44	0	2268844..2269290	-	148	57865654	-	SERP2241	-	transcriptional regulator, putative
2193	 34.73	0	2269462..2271111	+	549	57865655	ipdC	SERP2242	-	indole-3-pyruvate decarboxylase
2194	 25.40	-1	2271304..2271429	-	41	57865656	-	SERP2243	-	hypothetical protein
2195	 33.76	0	2271458..2272624	-	388	57865657	-	SERP2244	-	capA-related protein
2196	 33.60	0	2272878..2273636	-	252	57865658	-	SERP2245	-	tributyrin esterase EstA, putative
2197	 29.55	0	2273928..2274614	-	228	57865659	-	SERP2246	-	Crp/FNR family transcriptional regulator
2198	 34.26	0	2274833..2276236	-	467	57865660	arcD	SERP2247	-	arginine/ornithine antiporter
2199	 26.24	-1	2276328..2276468	+	46	57865668	-	SERP2248	-	hypothetical protein
2200	 34.33	0	2276501..2277508	-	335	57865669	arcB-1	SERP2249	-	ornithine carbamoyltransferase
2201	 34.79	0	2277613..2278848	-	411	57865648	arcA	SERP2250	-	arginine deiminase
2202	 28.14	-1	2279187..2279648	-	153	57865649	-	SERP2251	-	ArgR family transcriptional regulator
2203	 35.43	0	2280162..2281685	-	507	57865650	sepA	SERP2252	-	extracellular elastase precursor
2204	 32.45	0	2282118..2283362	-	414	57865651	-	SERP2253	-	succinyl-diaminopimelate desuccinylase
2205	 30.19	0	2283725..2284201	+	158	57865652	-	SERP2254	-	hypothetical protein
2206	 31.91	0	2284405..2285319	+	304	57865661	-	SERP2255	-	hypothetical protein
2207	 29.24	0	2285300..2285470	+	56	57865662	-	SERP2256	-	hypothetical protein
2208	 38.91	+1	2285934..2286722	-	262	57865663	-	SERP2257	-	acetoin reductase
2209	 35.56	0	2287012..2287146	+	44	57865664	-	SERP2258	-	hemolysin, putative
2210	 28.90	0	2287464..2289335	+	623	57865665	-	SERP2259	-	BglG family transcriptional antiterminator
2211	 37.40	+1	2289420..2291360	+	646	57865666	-	SERP2260	-	PTS system, fructose-specific IIABC components
2212	 34.28	0	2291376..2292326	+	316	57865667	manA-2	SERP2261	-	mannose-6-phosphate isomerase, class I
2213	 33.93	0	2292637..2295501	-	954	57865677	-	SERP2262	-	phage infection protein
2214	 33.84	0	2295783..2297750	+	655	57865678	-	SERP2263	-	N-acetylmuramoyl-L-alanine amidase
2215	 32.25	0	2298118..2300148	-	676	57865679	-	SERP2264	-	cell wall surface anchor family protein
2216	 36.83	+1	2300398..2300826	+	142	57865680	-	SERP2265	-	organic hydroperoxide resistance protein, putative
2217	 22.22	-2	2300851..2301039	-	62	57865681	-	SERP2266	-	hypothetical protein
2218	 31.64	0	2301140..2301316	+	58	57865682	-	SERP2267	-	hypothetical protein
2219	 30.77	0	2301515..2301670	-	51	57865683	-	SERP2268	-	truncated IS1272 transposase
2220	 38.12	+1	2302067..2302756	-	229	57865684	-	SERP2269	-	hypothetical protein
2221	 31.37	0	2302918..2304090	-	390	57865693	-	SERP2270	-	major facilitator superfamily protein
2222	 33.61	0	2304431..2304787	+	118	57865694	-	SERP2271	-	hypothetical protein
2223	 35.83	+1	2304937..2305416	-	159	57865695	-	SERP2272	-	methionine sulfoxide reductase A
2224	 33.05	0	2305586..2305933	-	115	57865696	-	SERP2273	-	hypothetical protein
2225	 31.99	0	2306039..2307379	-	446	57865697	-	SERP2274	-	hypothetical protein
2226	 34.06	0	2307372..2308880	-	502	57865698	-	SERP2275	-	glycosyl transferase, group 1 family protein
2227	 33.42	0	2308898..2311288	-	796	57865699	-	SERP2276	-	preprotein translocase subunit SecA
2228	 33.65	0	2311840..2313408	-	522	57865707	-	SERP2278	-	hypothetical protein
2229	 31.54	0	2313389..2314945	-	518	57865708	-	SERP2279	-	hypothetical protein
2230	 29.25	0	2314963..2316162	-	399	57865709	secY	SERP2280	-	preprotein translocase subunit SecY
2231	 39.57	+2	2316305..2321917	-	1870	57865710	-	SERP2281	-	serine threonine rich antigen
2232	 27.80	-1	2322337..2323638	-	433	57865711	-	SERP2282	-	hypothetical protein
2233	 34.44	0	2323914..2324729	-	271	57865712	-	SERP2283	-	phosphonate ABC transporter, permease protein
2234	 34.96	0	2324726..2325526	-	266	57865713	-	SERP2284	-	phosphonate ABC transporter, permease protein
2235	 35.40	0	2325528..2326301	-	257	57865714	-	SERP2285	-	phosphonate ABC transporter, ATP-binding protein
2236	 31.97	0	2326415..2327371	-	318	57865722	-	SERP2286	-	phosphonate ABC transporter, phosphonate-binding protein
2237	 35.46	0	2327606..2329156	+	516	57865723	-	SERP2287	-	hypothetical protein
2238	 33.14	0	2329253..2330788	+	511	57865724	-	SERP2288	-	5'-nucleotidase family protein
2239	 32.40	0	2330888..2332063	-	391	57865725	-	SERP2289	-	transporter, putative
2240	 25.44	-1	2332514..2332627	+	37	57865726	-	SERP2290	-	hypothetical protein
2241	 17.59	-2	2333271..2333378	+	35	57865727	-	SERP2291	-	hypothetical protein
2242	 28.49	0	2333498..2334055	-	185	57865728	icaR	SERP2292	-	intercellular adhesion regulator
2243	 33.01	0	2334220..2335458	+	412	57865729	icaA	SERP2293	-	N-glycosyltransferase PgaC
2244	 30.72	0	2335422..2335727	+	101	57865737	icaD	SERP2294	-	intercellular adhesion protein D
2245	 30.57	0	2335724..2336593	+	289	57865738	icaB	SERP2295	-	intercellular adhesion protein B
2246	 27.06	-1	2336580..2337647	+	355	57865739	icaC	SERP2296	-	intercellular adhesion protein C
2247	 34.25	0	2337843..2339909	-	688	57865740	geh-1	SERP2297	-	lipase
2248	 26.95	-1	2339963..2340103	+	46	57865741	-	SERP2298	-	hypothetical protein
2249	 31.55	0	2340315..2341100	+	261	57865742	-	SERP2299	-	N-acetyltransferase family protein
2250	 34.43	0	2341209..2341844	-	211	57865743	hisIE	SERP2300	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2251	 35.70	0	2341841..2342599	-	252	57865752	hisF	SERP2301	-	imidazoleglycerol phosphate synthase, cyclase subunit
2252	 33.90	0	2342596..2343300	-	234	57865753	hisA	SERP2302	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2253	 35.41	0	2343293..2343871	-	192	57865754	hisH	SERP2303	-	imidazole glycerol phosphate synthase subunit HisH
2254	 33.68	0	2343868..2344446	-	192	57865755	hisB	SERP2304	-	imidazoleglycerol-phosphate dehydratase
2255	 35.98	+1	2344562..2345806	-	414	57865756	hisD	SERP2305	-	histidinol dehydrogenase
2256	 33.66	0	2345799..2346413	-	204	57865757	hisG	SERP2306	-	ATP phosphoribosyltransferase catalytic subunit
2257	 30.87	0	2346438..2347250	-	270	57865758	hisZ	SERP2307	-	ATP phosphoribosyltransferase regulatory subunit
2258	 32.61	0	2347487..2347903	-	138	57865766	-	SERP2308	-	hypothetical protein
2259	 28.22	-1	2348006..2348416	+	136	57865767	-	SERP2309	-	AsnC family transcriptional regulator
2260	 31.79	0	2349132..2349650	-	172	57865768	-	SERP2311	-	acetyltransferase
2261	 35.34	0	2350001..2351497	+	498	57865769	mqo-3	SERP2312	-	malate:quinone oxidoreductase
2262	 23.81	-2	2352266..2352370	-	34	57865770	-	SERP2313	-	hypothetical protein
2263	 31.01	0	2352715..2353230	+	171	57865771	-	SERP2314	-	hypothetical protein
2264	 34.46	0	2353490..2354467	-	325	57865772	drp35	SERP2315	-	drp35 protein
2265	 34.68	0	2354749..2355711	+	320	57865780	-	SERP2316	-	hypothetical protein
2266	 35.99	+1	2355905..2356543	+	212	57865781	pcp	SERP2317	-	pyrrolidone-carboxylate peptidase
2267	 32.82	0	2356576..2356968	-	130	57865782	-	SERP2318	-	hypothetical protein
2268	 24.84	-1	2356984..2357136	-	50	57865783	-	SERP2319	-	hypothetical protein
2269	 33.90	0	2357317..2358909	+	530	57865784	-	SERP2320	-	choline/carnitine/betaine transporter
2270	 32.16	0	2359074..2359586	-	170	57865785	-	SERP2321	-	immunodominant antigen B, putative
2271	 29.63	0	2359691..2359798	+	35	57865786	-	SERP2322	-	hypothetical protein
2272	 32.05	0	2359862..2360017	-	51	57865787	-	SERP2323	-	truncated IS1272 transposase
2273	 37.79	+1	2360269..2361546	-	425	57865796	-	SERP2324	-	branched-chain alpha-keto acid dehydrogenase subunit E2
2274	 39.58	+2	2361560..2362600	-	346	57865797	-	SERP2325	-	acetoin dehydrogenase, E1 component, beta subunit
2275	 36.90	+1	2362671..2363624	-	317	57865798	-	SERP2326	-	acetoin dehydrogenase, E1 component, alpha subunit
2276	 37.10	+1	2363666..2365018	-	450	57865799	-	SERP2327	-	acetoin dehydrogenase, E3 component, dihydrolipoamide dehydrogenase
2277	 38.20	+1	2365343..2366761	+	472	57865800	-	SERP2328	-	anion transporter family protein
2278	 24.51	-2	2366772..2366873	-	33	57865801	-	SERP2329	-	hypothetical protein
2279	 33.77	0	2367078..2367989	+	303	57865809	-	SERP2330	-	thiamine biosynthesis protein, putative
2280	 33.00	0	2368097..2369002	-	301	57865810	rarD	SERP2331	-	rarD protein
2281	 30.56	0	2369134..2369637	-	167	57865811	-	SERP2332	-	hypothetical protein
2282	 36.33	+1	2369726..2371429	-	567	57865670	-	SERP2333	-	hypothetical protein
32.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.