IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.10   STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2130	 29.68	0	2204812..2205030	-	72	57865521	-	SERP2174	-	hypothetical protein
2131	 38.10	+1	2205477..2206652	-	391	57865522	-	SERP2175	-	amidohydrolase family protein
2132	 38.39	+1	2206974..2208692	-	572	57865523	betA	SERP2176	-	choline dehydrogenase
2133	 36.08	+1	2208852..2210342	-	496	57865534	betB	SERP2177	-	betaine aldehyde dehydrogenase
2134	 33.87	0	2210814..2211377	+	187	57865535	-	SERP2178	-	hypothetical protein
2135	 35.24	0	2211424..2213046	-	540	161486707	-	SERP2179	-	choline/carnitine/betaine transporter
2136	 35.18	0	2213467..2214765	-	432	57865537	-	SERP2180	-	anaerobic C4-dicarboxylate transporter
2137	 27.78	-1	2214989..2215114	-	41	57865538	-	SERP2181	-	hypothetical protein
2138	 33.33	0	2215128..2215664	-	178	57865539	nrdG	SERP2182	-	anaerobic ribonucleoside-triphosphate reductase activating protein
2139	 35.17	0	2215661..2217511	-	616	57865540	nrdD	SERP2183	-	anaerobic ribonucleoside triphosphate reductase
2140	 33.99	0	2217830..2218135	-	101	57865549	-	SERP2184	-	hypothetical protein
2141	 35.00	0	2218459..2219058	-	199	57865550	cysC	SERP2185	-	adenylylsulfate kinase
2142	 36.22	+1	2219074..2220252	-	392	57865551	sat	SERP2186	-	sulfate adenylyltransferase
2143	 34.22	0	2220276..2221175	-	299	57865552	-	SERP2187	-	hypothetical protein
2144	 32.35	0	2221197..2221808	-	203	57865553	-	SERP2188	-	precorrin-2 dehydrogenase
2145	 38.46	+1	2221883..2222662	-	259	57865554	-	SERP2189	-	uroporphyrin-III C-methyltransferase, putative
2146	 34.61	0	2222684..2224402	-	572	57865555	cysI	SERP2190	-	sulfite reductase subunit beta
2147	 35.23	0	2224422..2226266	-	614	57865556	cysJ	SERP2191	-	sulfite reductase (NADPH) flavoprotein alpha-component
2148	 32.92	0	2226564..2227295	-	243	57865564	cysH	SERP2192	-	phosophoadenylyl-sulfate reductase
2149	 22.50	-2	2227498..2227617	+	39	57865565	-	SERP2193	-	hypothetical protein
2150	 28.09	-1	2227609..2228085	-	158	57865566	gpxA-2	SERP2194	-	glutathione peroxidase
2151	 34.15	0	2228098..2229441	-	447	57865567	-	SERP2195	-	alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase, putative
2152	 31.97	0	2229458..2229898	-	146	57865568	-	SERP2196	-	MarR family transcriptional regulator
2153	 32.93	0	2230118..2230867	-	249	57865569	-	SERP2197	-	hypothetical protein
2154	 33.25	0	2230873..2232129	-	418	57865570	-	SERP2198	-	hypothetical protein
2155	 33.51	0	2232343..2233452	-	369	57865578	-	SERP2199	-	hypothetical protein
2156	 41.90	+2	2233912..2234016	-	34	57865579	-	SERP2200	-	hypothetical protein
2157	 34.21	0	2234763..2236355	-	530	57865580	-	SERP2201	-	putative symporter YidK
2158	 29.95	0	2236877..2237467	-	196	57865581	-	SERP2202	-	hypothetical protein
2159	 28.07	-1	2237571..2239583	-	670	57865582	-	SERP2203	-	ABC transporter, permease protein
2160	 34.80	0	2239585..2240334	-	249	57865583	-	SERP2204	-	ABC transporter, ATP-binding protein
2161	 28.37	-1	2240445..2241350	-	301	57865584	-	SERP2205	-	sensor histidine kinase, putative
2162	 33.18	0	2241347..2242012	-	221	57865585	-	SERP2206	-	DNA-binding response regulator
2163	 23.33	-2	2242043..2242222	-	59	57865594	-	SERP2207	-	hypothetical protein
2164	 34.56	0	2242520..2243989	+	489	57865595	-	SERP2208	-	alkaline phosphatase family protein
2165	 35.02	0	2244112..2245656	-	514	57865596	-	SERP2209	-	hypothetical protein
2166	 28.75	0	2245847..2248180	-	777	57865597	-	SERP2210	-	glycosyl transferase, group 1 family protein
2167	 30.39	0	2248378..2248479	-	33	57865598	-	SERP2211	-	hypothetical protein
2168	 34.38	0	2248885..2250222	-	445	57865599	-	SERP2212	-	hypothetical protein
2169	 22.73	-2	2251501..2251632	+	43	57865600	-	SERP2213	-	hypothetical protein
2170	 23.76	-2	2251642..2251923	+	93	57865601	-	SERP2214	-	hypothetical protein
2171	 25.81	-1	2252357..2252542	+	61	57865602	-	SERP2215	-	hypothetical protein
2172	 33.33	0	2252735..2253673	-	312	57865611	-	SERP2216	-	ribokinase, putative
2173	 32.31	0	2253837..2255003	-	388	57865612	-	SERP2217	-	cytosine/purines, uracil, thiamine, allantoin permease family protein
2174	 34.55	0	2255022..2256008	-	328	57865613	-	SERP2218	-	ADP-ribosylglycohydrolase, putative
2175	 25.23	-1	2257002..2257433	+	143	57865614	-	SERP2220	-	universal stress protein
2176	 27.83	-1	2257793..2258410	+	205	57865615	-	SERP2221	-	cadmium resistance family protein
2177	 24.71	-2	2258429..2258776	+	115	57865616	cadC	SERP2222	-	transcriptional regulator CadC
2178	 33.33	0	2259315..2259416	-	33	57865624	-	SERP2223	-	hypothetical protein
2179	 39.33	+1	2259614..2259763	-	49	57865625	-	SERP2224	-	metallothionein 2-related protein
2180	 39.13	+1	2259780..2260124	-	114	57865626	-	SERP2225	-	ArsR family transcriptional regulator
2181	 37.21	+1	2260478..2260606	+	42	57865627	-	SERP2226	-	hypothetical protein
2182	 35.12	0	2260680..2260847	-	55	57865628	-	SERP2227	-	hypothetical protein
2183	 31.28	0	2260878..2261120	-	80	57865629	-	SERP2228	-	hypothetical protein
2184	 34.42	0	2261856..2262131	+	91	57865630	-	SERP2230	-	hypothetical protein
2185	 30.61	0	2262635..2263774	-	379	57865639	-	SERP2232	-	major facilitator superfamily protein
2186	 24.82	-1	2263927..2264748	+	273	57865640	-	SERP2233	-	LysR family transcriptional regulator
2187	 28.96	0	2265275..2266006	+	243	57865641	-	SERP2234	-	hypothetical protein
2188	 39.58	+2	2266163..2266258	+	31	57865642	-	SERP2235	-	hypothetical protein
2189	 25.67	-1	2266411..2267010	+	199	57865643	-	SERP2236	-	hypothetical protein
2190	 30.21	0	2267485..2267580	-	31	57865644	-	SERP2238	-	hypothetical protein
2191	 28.78	0	2268146..2268628	-	160	57865653	-	SERP2240	-	IS200 family transposase
2192	 32.44	0	2268844..2269290	-	148	57865654	-	SERP2241	-	transcriptional regulator, putative
2193	 34.73	0	2269462..2271111	+	549	57865655	ipdC	SERP2242	-	indole-3-pyruvate decarboxylase
2194	 25.40	-1	2271304..2271429	-	41	57865656	-	SERP2243	-	hypothetical protein
2195	 33.76	0	2271458..2272624	-	388	57865657	-	SERP2244	-	capA-related protein
2196	 33.60	0	2272878..2273636	-	252	57865658	-	SERP2245	-	tributyrin esterase EstA, putative
2197	 29.55	0	2273928..2274614	-	228	57865659	-	SERP2246	-	Crp/FNR family transcriptional regulator
2198	 34.26	0	2274833..2276236	-	467	57865660	arcD	SERP2247	-	arginine/ornithine antiporter
2199	 26.24	-1	2276328..2276468	+	46	57865668	-	SERP2248	-	hypothetical protein
2200	 34.33	0	2276501..2277508	-	335	57865669	arcB-1	SERP2249	-	ornithine carbamoyltransferase
2201	 34.79	0	2277613..2278848	-	411	57865648	arcA	SERP2250	-	arginine deiminase
2202	 28.14	-1	2279187..2279648	-	153	57865649	-	SERP2251	-	ArgR family transcriptional regulator
2203	 35.43	0	2280162..2281685	-	507	57865650	sepA	SERP2252	-	extracellular elastase precursor
2204	 32.45	0	2282118..2283362	-	414	57865651	-	SERP2253	-	succinyl-diaminopimelate desuccinylase
2205	 30.19	0	2283725..2284201	+	158	57865652	-	SERP2254	-	hypothetical protein
2206	 31.91	0	2284405..2285319	+	304	57865661	-	SERP2255	-	hypothetical protein
2207	 29.24	0	2285300..2285470	+	56	57865662	-	SERP2256	-	hypothetical protein
2208	 38.91	+1	2285934..2286722	-	262	57865663	-	SERP2257	-	acetoin reductase
2209	 35.56	0	2287012..2287146	+	44	57865664	-	SERP2258	-	hemolysin, putative
2210	 28.90	0	2287464..2289335	+	623	57865665	-	SERP2259	-	BglG family transcriptional antiterminator
2211	 37.40	+1	2289420..2291360	+	646	57865666	-	SERP2260	-	PTS system, fructose-specific IIABC components
2212	 34.28	0	2291376..2292326	+	316	57865667	manA-2	SERP2261	-	mannose-6-phosphate isomerase, class I
2213	 33.93	0	2292637..2295501	-	954	57865677	-	SERP2262	-	phage infection protein
2214	 33.84	0	2295783..2297750	+	655	57865678	-	SERP2263	-	N-acetylmuramoyl-L-alanine amidase
2215	 32.25	0	2298118..2300148	-	676	57865679	-	SERP2264	-	cell wall surface anchor family protein
2216	 36.83	+1	2300398..2300826	+	142	57865680	-	SERP2265	-	organic hydroperoxide resistance protein, putative
2217	 22.22	-2	2300851..2301039	-	62	57865681	-	SERP2266	-	hypothetical protein
2218	 31.64	0	2301140..2301316	+	58	57865682	-	SERP2267	-	hypothetical protein
2219	 30.77	0	2301515..2301670	-	51	57865683	-	SERP2268	-	truncated IS1272 transposase
2220	 38.12	+1	2302067..2302756	-	229	57865684	-	SERP2269	-	hypothetical protein
2221	 31.37	0	2302918..2304090	-	390	57865693	-	SERP2270	-	major facilitator superfamily protein
2222	 33.61	0	2304431..2304787	+	118	57865694	-	SERP2271	-	hypothetical protein
2223	 35.83	+1	2304937..2305416	-	159	57865695	-	SERP2272	-	methionine sulfoxide reductase A
2224	 33.05	0	2305586..2305933	-	115	57865696	-	SERP2273	-	hypothetical protein
2225	 31.99	0	2306039..2307379	-	446	57865697	-	SERP2274	-	hypothetical protein
2226	 34.06	0	2307372..2308880	-	502	57865698	-	SERP2275	-	glycosyl transferase, group 1 family protein
2227	 33.42	0	2308898..2311288	-	796	57865699	-	SERP2276	-	preprotein translocase subunit SecA
2228	 33.65	0	2311840..2313408	-	522	57865707	-	SERP2278	-	hypothetical protein
2229	 31.54	0	2313389..2314945	-	518	57865708	-	SERP2279	-	hypothetical protein
32.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.