IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.10   STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2094	 39.41	+1	2164774..2165481	-	235	57865592	-	SERP2138	-	immunodominant antigen A, putative
2095	 26.67	-1	2166003..2166107	-	34	57865593	-	SERP2139	-	hypothetical protein
2096	 31.09	0	2166137..2167561	-	474	57865603	-	SERP2140	-	hypothetical protein
2097	 35.32	0	2167662..2168720	-	352	57865604	-	SERP2141	-	regulatory protein, putative
2098	 34.93	0	2169022..2170401	-	459	57865605	-	SERP2142	-	amino acid permease family protein
2099	 34.62	0	2170608..2171465	-	285	57865606	-	SERP2143	-	fructosamine kinase family protein
2100	 33.15	0	2171689..2172753	+	354	57865607	pyrD	SERP2144	-	dihydroorotate dehydrogenase 2
2101	 27.78	-1	2172847..2173116	+	89	57865608	-	SERP2145	-	hypothetical protein
2102	 32.05	0	2173247..2173402	-	51	57865609	-	SERP2146	-	truncated IS1272 transposase
2103	 30.40	0	2173685..2174401	-	238	57865610	-	SERP2147	-	hypothetical protein
2104	 32.36	0	2174678..2176009	-	443	57865617	-	SERP2148	-	hypothetical protein
2105	 30.56	0	2176013..2177023	-	336	57865618	-	SERP2149	-	hypothetical protein
2106	 30.75	0	2177447..2177833	-	128	57865619	panD	SERP2150	-	aspartate alpha-decarboxylase
2107	 34.38	0	2177826..2178686	-	286	57865620	panC	SERP2151	-	pantoate--beta-alanine ligase
2108	 36.02	+1	2178679..2179497	-	272	57865621	panB	SERP2152	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2109	 32.87	0	2179573..2180442	+	289	57865622	-	SERP2153	-	2-dehydropantoate 2-reductase
2110	 33.48	0	2180841..2181545	-	234	57865623	budA	SERP2154	-	alpha-acetolactate decarboxylase
2111	 35.38	0	2181657..2183321	-	554	57865631	budB	SERP2155	-	acetolactate synthase
2112	 33.44	0	2183384..2184334	-	316	57865632	ldh	SERP2156	-	L-lactate dehydrogenase
2113	 29.71	0	2185156..2186037	-	293	57865633	-	SERP2157	-	LysR family transcriptional regulator
2114	 37.53	+1	2186581..2188032	+	483	57865634	-	SERP2158	-	amino acid permease family protein
2115	 36.55	+1	2188159..2189496	-	445	57865635	-	SERP2159	-	4-aminobutyrate aminotransferase
2116	 29.40	0	2189763..2190194	+	143	57865636	-	SERP2160	-	hypothetical protein
2117	 34.58	0	2190298..2191176	-	292	57865637	-	SERP2161	-	putative lipoprotein
2118	 33.84	0	2191498..2192088	+	196	57865638	-	SERP2162	-	cell wall surface anchor family protein
2119	 29.63	0	2192083..2192271	-	62	57865645	-	SERP2163	-	truncated IS1272 transposase
2120	 27.89	-1	2192579..2192725	-	48	57865646	-	SERP2164	-	hypothetical protein
2121	 36.12	+1	2192892..2194253	+	453	57865647	-	SERP2165	-	pyridine nucleotide-disulfide oxidoreductase
2122	 33.89	0	2194558..2195448	+	296	57865506	fdaB	SERP2166	-	fructose-1,6-bisphosphate aldolase
2123	 30.63	0	2195581..2196504	-	307	57865507	-	SERP2167	-	putative lipoprotein
2124	 34.20	0	2196899..2198398	-	499	57865508	mqo-2	SERP2168	-	malate:quinone oxidoreductase
2125	 31.26	0	2198607..2199425	-	272	57865516	-	SERP2169	-	hypothetical protein
2126	 35.39	0	2199427..2202054	-	875	57865517	ppdK	SERP2170	-	pyruvate phosphate dikinase
2127	 22.58	-2	2202180..2202272	-	30	57865518	-	SERP2171	-	hypothetical protein
2128	 35.28	0	2202403..2203998	-	531	57865519	-	SERP2172	-	acetyl-CoA synthetase, putative
2129	 30.87	0	2204338..2204784	-	148	57865520	-	SERP2173	-	hypothetical protein
2130	 29.68	0	2204812..2205030	-	72	57865521	-	SERP2174	-	hypothetical protein
2131	 38.10	+1	2205477..2206652	-	391	57865522	-	SERP2175	-	amidohydrolase family protein
2132	 38.39	+1	2206974..2208692	-	572	57865523	betA	SERP2176	-	choline dehydrogenase
2133	 36.08	+1	2208852..2210342	-	496	57865534	betB	SERP2177	-	betaine aldehyde dehydrogenase
2134	 33.87	0	2210814..2211377	+	187	57865535	-	SERP2178	-	hypothetical protein
2135	 35.24	0	2211424..2213046	-	540	161486707	-	SERP2179	-	choline/carnitine/betaine transporter
2136	 35.18	0	2213467..2214765	-	432	57865537	-	SERP2180	-	anaerobic C4-dicarboxylate transporter
2137	 27.78	-1	2214989..2215114	-	41	57865538	-	SERP2181	-	hypothetical protein
2138	 33.33	0	2215128..2215664	-	178	57865539	nrdG	SERP2182	-	anaerobic ribonucleoside-triphosphate reductase activating protein
2139	 35.17	0	2215661..2217511	-	616	57865540	nrdD	SERP2183	-	anaerobic ribonucleoside triphosphate reductase
2140	 33.99	0	2217830..2218135	-	101	57865549	-	SERP2184	-	hypothetical protein
2141	 35.00	0	2218459..2219058	-	199	57865550	cysC	SERP2185	-	adenylylsulfate kinase
2142	 36.22	+1	2219074..2220252	-	392	57865551	sat	SERP2186	-	sulfate adenylyltransferase
2143	 34.22	0	2220276..2221175	-	299	57865552	-	SERP2187	-	hypothetical protein
2144	 32.35	0	2221197..2221808	-	203	57865553	-	SERP2188	-	precorrin-2 dehydrogenase
2145	 38.46	+1	2221883..2222662	-	259	57865554	-	SERP2189	-	uroporphyrin-III C-methyltransferase, putative
2146	 34.61	0	2222684..2224402	-	572	57865555	cysI	SERP2190	-	sulfite reductase subunit beta
2147	 35.23	0	2224422..2226266	-	614	57865556	cysJ	SERP2191	-	sulfite reductase (NADPH) flavoprotein alpha-component
2148	 32.92	0	2226564..2227295	-	243	57865564	cysH	SERP2192	-	phosophoadenylyl-sulfate reductase
2149	 22.50	-2	2227498..2227617	+	39	57865565	-	SERP2193	-	hypothetical protein
2150	 28.09	-1	2227609..2228085	-	158	57865566	gpxA-2	SERP2194	-	glutathione peroxidase
2151	 34.15	0	2228098..2229441	-	447	57865567	-	SERP2195	-	alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase, putative
2152	 31.97	0	2229458..2229898	-	146	57865568	-	SERP2196	-	MarR family transcriptional regulator
2153	 32.93	0	2230118..2230867	-	249	57865569	-	SERP2197	-	hypothetical protein
2154	 33.25	0	2230873..2232129	-	418	57865570	-	SERP2198	-	hypothetical protein
2155	 33.51	0	2232343..2233452	-	369	57865578	-	SERP2199	-	hypothetical protein
2156	 41.90	+2	2233912..2234016	-	34	57865579	-	SERP2200	-	hypothetical protein
2157	 34.21	0	2234763..2236355	-	530	57865580	-	SERP2201	-	putative symporter YidK
2158	 29.95	0	2236877..2237467	-	196	57865581	-	SERP2202	-	hypothetical protein
2159	 28.07	-1	2237571..2239583	-	670	57865582	-	SERP2203	-	ABC transporter, permease protein
2160	 34.80	0	2239585..2240334	-	249	57865583	-	SERP2204	-	ABC transporter, ATP-binding protein
2161	 28.37	-1	2240445..2241350	-	301	57865584	-	SERP2205	-	sensor histidine kinase, putative
2162	 33.18	0	2241347..2242012	-	221	57865585	-	SERP2206	-	DNA-binding response regulator
2163	 23.33	-2	2242043..2242222	-	59	57865594	-	SERP2207	-	hypothetical protein
2164	 34.56	0	2242520..2243989	+	489	57865595	-	SERP2208	-	alkaline phosphatase family protein
2165	 35.02	0	2244112..2245656	-	514	57865596	-	SERP2209	-	hypothetical protein
2166	 28.75	0	2245847..2248180	-	777	57865597	-	SERP2210	-	glycosyl transferase, group 1 family protein
2167	 30.39	0	2248378..2248479	-	33	57865598	-	SERP2211	-	hypothetical protein
2168	 34.38	0	2248885..2250222	-	445	57865599	-	SERP2212	-	hypothetical protein
2169	 22.73	-2	2251501..2251632	+	43	57865600	-	SERP2213	-	hypothetical protein
2170	 23.76	-2	2251642..2251923	+	93	57865601	-	SERP2214	-	hypothetical protein
2171	 25.81	-1	2252357..2252542	+	61	57865602	-	SERP2215	-	hypothetical protein
2172	 33.33	0	2252735..2253673	-	312	57865611	-	SERP2216	-	ribokinase, putative
2173	 32.31	0	2253837..2255003	-	388	57865612	-	SERP2217	-	cytosine/purines, uracil, thiamine, allantoin permease family protein
2174	 34.55	0	2255022..2256008	-	328	57865613	-	SERP2218	-	ADP-ribosylglycohydrolase, putative
2175	 25.23	-1	2257002..2257433	+	143	57865614	-	SERP2220	-	universal stress protein
2176	 27.83	-1	2257793..2258410	+	205	57865615	-	SERP2221	-	cadmium resistance family protein
2177	 24.71	-2	2258429..2258776	+	115	57865616	cadC	SERP2222	-	transcriptional regulator CadC
2178	 33.33	0	2259315..2259416	-	33	57865624	-	SERP2223	-	hypothetical protein
2179	 39.33	+1	2259614..2259763	-	49	57865625	-	SERP2224	-	metallothionein 2-related protein
2180	 39.13	+1	2259780..2260124	-	114	57865626	-	SERP2225	-	ArsR family transcriptional regulator
2181	 37.21	+1	2260478..2260606	+	42	57865627	-	SERP2226	-	hypothetical protein
2182	 35.12	0	2260680..2260847	-	55	57865628	-	SERP2227	-	hypothetical protein
2183	 31.28	0	2260878..2261120	-	80	57865629	-	SERP2228	-	hypothetical protein
2184	 34.42	0	2261856..2262131	+	91	57865630	-	SERP2230	-	hypothetical protein
2185	 30.61	0	2262635..2263774	-	379	57865639	-	SERP2232	-	major facilitator superfamily protein
2186	 24.82	-1	2263927..2264748	+	273	57865640	-	SERP2233	-	LysR family transcriptional regulator
2187	 28.96	0	2265275..2266006	+	243	57865641	-	SERP2234	-	hypothetical protein
2188	 39.58	+2	2266163..2266258	+	31	57865642	-	SERP2235	-	hypothetical protein
2189	 25.67	-1	2266411..2267010	+	199	57865643	-	SERP2236	-	hypothetical protein
2190	 30.21	0	2267485..2267580	-	31	57865644	-	SERP2238	-	hypothetical protein
2191	 28.78	0	2268146..2268628	-	160	57865653	-	SERP2240	-	IS200 family transposase
2192	 32.44	0	2268844..2269290	-	148	57865654	-	SERP2241	-	transcriptional regulator, putative
2193	 34.73	0	2269462..2271111	+	549	57865655	ipdC	SERP2242	-	indole-3-pyruvate decarboxylase
32.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.