IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.10   STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2000	 29.63	0	2065150..2065338	+	62	57865430	-	SERP2044	-	hypothetical protein
2001	 37.85	+1	2065501..2066319	-	272	57865439	-	SERP2045	-	short chain dehydrogenase
2002	 33.33	0	2066632..2068164	+	510	57865440	-	SERP2046	-	exopolyphosphatase
2003	 33.33	0	2068227..2070392	+	721	57865441	ppk	SERP2047	-	polyphosphate kinase
2004	 38.58	+1	2070559..2071815	-	418	57865442	-	SERP2048	-	acetylornithine deacetylase
2005	 38.24	+1	2071904..2072596	-	230	57865443	-	SERP2049	-	short chain dehydrogenase/reductase family oxidoreductase
2006	 31.97	0	2072959..2073105	+	48	57865444	-	SERP2050	-	hypothetical protein
2007	 34.90	0	2073388..2073579	-	63	57865445	-	SERP2051	-	hypothetical protein
2008	 26.69	-1	2073731..2076589	-	952	57865446	-	SERP2052	-	helicase, putative
2009	 30.58	0	2076591..2076989	-	132	57865454	-	SERP2053	-	MutT/nudix family protein
2010	 29.18	0	2077256..2078746	-	496	57865455	-	SERP2054	-	glycosyl transferase, group 1 family protein
2011	 35.04	0	2078964..2080604	+	546	57865456	-	SERP2055	-	phosphoglucomutase/phosphomannomutase family protein
2012	 33.91	0	2080818..2081684	-	288	57865457	galU	SERP2056	-	UTP-glucose-1-phosphate uridylyltransferase
2013	 36.28	+1	2081933..2083291	-	452	57865458	gntP	SERP2057	-	gluconate transporter, permease protein
2014	 36.71	+1	2083341..2084882	-	513	57865459	gntK	SERP2058	-	gluconokinase
2015	 35.10	0	2084906..2085586	-	226	57865460	gntR	SERP2059	-	gluconate operon transcriptional repressor
2016	 36.13	+1	2085955..2087313	+	452	57865468	glpT	SERP2060	-	glycerol-3-phosphate transporter
2017	 32.36	0	2087471..2088187	-	238	57865469	-	SERP2061	-	MerR family transcriptional regulator
2018	 32.32	0	2088206..2088304	-	32	57865470	-	SERP2062	-	hypothetical protein
2019	 32.53	0	2088273..2089148	-	291	57865471	-	SERP2063	-	esterase, putative
2020	 28.54	0	2089454..2090371	+	305	57865472	-	SERP2064	-	PAP2 family protein
2021	 30.20	0	2090491..2091192	-	233	57865473	-	SERP2065	-	hypothetical protein
2022	 35.51	0	2091456..2091869	-	137	57865474	-	SERP2066	-	hypothetical protein
2023	 33.59	0	2091947..2093863	-	638	57865475	-	SERP2067	-	hypothetical protein
2024	 27.15	-1	2094025..2094315	-	96	57865476	-	SERP2068	-	hypothetical protein
2025	 36.31	+1	2094468..2095742	-	424	57865485	-	SERP2069	-	major facilitator superfamily protein
2026	 32.90	0	2096555..2097013	+	152	57865486	-	SERP2070	-	thiamine-phosphate pyrophosphorylase, putative
2027	 36.01	+1	2097006..2098124	+	372	57865487	-	SERP2071	-	glycine oxidase, putative
2028	 34.33	0	2098108..2098308	+	66	57865488	thiS	SERP2072	-	thiamine biosynthesis protein ThiS
2029	 36.98	+1	2098310..2099077	+	255	57865489	thiG	SERP2073	-	thiazole synthase
2030	 35.84	+1	2099079..2100077	+	332	57865490	-	SERP2074	-	HesA/MoeB/ThiF family protein
2031	 31.22	0	2100185..2100799	+	204	57865491	-	SERP2075	-	DedA family protein
2032	 32.16	0	2100973..2102937	+	654	57865492	-	SERP2076	-	fructose-1,6-bisphosphatase, putative
2033	 33.78	0	2103160..2104947	-	595	57865501	-	SERP2077	-	Na+/H+ antiporter, putative
2034	 32.56	0	2105085..2105213	+	42	57865502	-	SERP2078	-	hypothetical protein
2035	 33.71	0	2105295..2106344	+	349	57865503	-	SERP2079	-	hypothetical protein
2036	 36.60	+1	2106578..2108017	+	479	57865504	-	SERP2080	-	aldehyde dehydrogenase family protein
2037	 31.86	0	2108088..2109035	-	315	57865505	-	SERP2081	-	adhesion lipoprotein, putative
2038	 33.33	0	2109202..2109483	+	93	57865482	-	SERP2082	-	acetyltransferase
2039	 34.71	0	2109745..2110542	+	265	57865483	-	SERP2083	-	glyoxalase family protein
2040	 34.67	0	2111487..2112980	-	497	57865484	aldA-2	SERP2084	-	aldehyde dehydrogenase
2041	 26.52	-1	2112980..2113111	-	43	57865493	-	SERP2085	-	hypothetical protein
2042	 34.39	0	2113358..2114020	-	220	57865494	frp	SERP2086	-	NAD(P)H-flavin oxidoreductase
2043	 34.44	0	2114267..2115259	+	330	57865495	-	SERP2087	-	D-lactate dehydrogenase
2044	 30.62	0	2115446..2116255	-	269	57865496	-	SERP2088	-	HAD superfamily hydrolase
2045	 31.37	0	2116600..2117211	-	203	57865497	srtA	SERP2089	-	sortase
2046	 33.13	0	2117387..2117881	+	164	57865498	-	SERP2090	-	phosphinothricin acetyltransferase, putative
2047	 29.38	0	2117944..2118120	-	58	57865499	-	SERP2091	-	hypothetical protein
2048	 31.41	0	2118445..2118600	+	51	57865500	-	SERP2092	-	truncated IS1272 transposase
2049	 23.53	-2	2118693..2118794	-	33	57865509	-	SERP2093	-	hypothetical protein
2050	 39.89	+2	2118833..2119732	-	299	57865510	sdhA	SERP2094	-	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
2051	 32.31	0	2119745..2120428	-	227	57865511	sdhB	SERP2095	-	L-serine dehydratase, iron-sulfur-dependent, beta subunit
2052	 35.44	0	2120428..2121471	-	347	57865512	-	SERP2096	-	perfringolysin O regulator protein, putative
2053	 32.46	0	2121760..2121873	+	37	57865513	-	SERP2097	-	hypothetical protein
2054	 29.39	0	2122124..2122909	-	261	57865514	-	SERP2098	-	hypothetical protein
2055	 34.81	0	2123184..2124674	-	496	57865515	xylB	SERP2099	-	D-xylulose kinase
2056	 35.17	0	2124965..2125888	-	307	57865524	rbsK	SERP2100	-	ribokinase
2057	 30.86	0	2125942..2126346	-	134	57865525	-	SERP2101	-	D-ribose pyranase
2058	 35.83	+1	2126368..2127249	-	293	57865526	-	SERP2102	-	hypothetical protein
2059	 32.59	0	2127505..2129109	-	534	57865527	dep	SERP2103	-	gamma-glutamyltranspeptidase
2060	 30.51	0	2129112..2129288	-	58	57865528	-	SERP2104	-	hypothetical protein
2061	 28.77	0	2129263..2130336	-	357	57865529	capA	SERP2105	-	capA protein
2062	 31.35	0	2130360..2130812	-	150	57865530	capC	SERP2106	-	capC protein
2063	 35.66	0	2130814..2131971	-	385	57865531	capB	SERP2107	-	capB protein
2064	 29.56	0	2132420..2132737	+	105	57865532	-	SERP2108	-	hypothetical protein
2065	 33.74	0	2132809..2133789	-	326	57865533	-	SERP2109	-	esterase, putative
2066	 32.04	0	2133872..2134720	-	282	57865541	-	SERP2110	-	hypothetical protein
2067	 30.58	0	2134903..2135229	-	108	57865542	-	SERP2111	-	thioredoxin, putative
2068	 34.00	0	2135452..2136504	+	350	57865543	-	SERP2112	-	alcohol dehydrogenase, zinc-containing
2069	 27.60	-1	2136569..2137336	-	255	57865544	-	SERP2113	-	abortive infection family protein
2070	 34.22	0	2137627..2139654	-	675	57865545	-	SERP2114	-	PTS system, IIABC components
2071	 34.43	0	2139898..2141637	-	579	57865546	-	SERP2115	-	pyruvate oxidase
2072	 33.04	0	2141687..2142376	-	229	57865547	-	SERP2116	-	hypothetical protein
2073	 31.04	0	2142373..2142765	-	130	57865548	-	SERP2117	-	LrgA family protein
2074	 32.54	0	2143077..2143961	-	294	57865557	-	SERP2118	-	LysR family transcriptional regulator
2075	 36.57	+1	2144149..2144364	+	71	57865558	-	SERP2119	-	hypothetical protein
2076	 34.26	0	2144622..2145053	+	143	57865559	-	SERP2120	-	secretory antigen precursor SsaA-related protein
2077	 35.76	+1	2145130..2146407	-	425	57865560	-	SERP2121	-	hydroxymethylglutaryl-CoA reductase, degradative
2078	 36.25	+1	2146652..2147818	+	388	57865561	-	SERP2122	-	hydroxymethylglutaryl-CoA synthase
2079	 34.87	0	2148070..2148588	-	172	57865562	ogt	SERP2123	-	methylated-DNA--protein-cysteine methyltransferase
2080	 30.32	0	2148893..2149357	-	154	57865563	-	SERP2124	-	hypothetical protein
2081	 27.32	-1	2149540..2149722	-	60	57865571	-	SERP2125	-	hypothetical protein
2082	 33.33	0	2149737..2151731	-	664	57865572	feoB	SERP2126	-	ferrous iron transport protein B
2083	 32.89	0	2151737..2151964	-	75	57865573	-	SERP2127	-	FeoA family protein
2084	 36.96	+1	2152253..2153797	-	514	57865574	-	SERP2128	-	1-pyrroline-5-carboxylate dehydrogenase
2085	 37.59	+1	2154300..2155169	-	289	57865575	-	SERP2129	-	short chain dehydrogenase/reductase family oxidoreductase
2086	 24.15	-2	2155285..2155578	+	97	57865576	-	SERP2130	-	hypothetical protein
2087	 35.97	+1	2155815..2158199	+	794	57865577	-	SERP2131	-	cation transporter E1-E2 family ATPase
2088	 31.88	0	2158331..2158537	+	68	57865586	-	SERP2132	-	heavy metal-binding protein, putative
2089	 33.73	0	2158591..2159589	-	332	57865587	-	SERP2133	-	D-lactate dehydrogenase
2090	 35.66	0	2159602..2160762	-	386	57865588	-	SERP2134	-	aminotransferase, class I
2091	 26.95	-1	2160907..2161047	+	46	57865589	-	SERP2135	-	hypothetical protein
2092	 39.92	+2	2161089..2161862	-	257	57865590	-	SERP2136	-	secretory antigen precursor SsaA
2093	 30.74	0	2162461..2164269	-	602	57865591	-	SERP2137	-	hypothetical protein
2094	 39.41	+1	2164774..2165481	-	235	57865592	-	SERP2138	-	immunodominant antigen A, putative
2095	 26.67	-1	2166003..2166107	-	34	57865593	-	SERP2139	-	hypothetical protein
2096	 31.09	0	2166137..2167561	-	474	57865603	-	SERP2140	-	hypothetical protein
2097	 35.32	0	2167662..2168720	-	352	57865604	-	SERP2141	-	regulatory protein, putative
2098	 34.93	0	2169022..2170401	-	459	57865605	-	SERP2142	-	amino acid permease family protein
2099	 34.62	0	2170608..2171465	-	285	57865606	-	SERP2143	-	fructosamine kinase family protein
32.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.