IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.10   STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1865	 31.93	0	1925764..1926120	+	118	57867779	-	SERP1904	-	hypothetical protein
1866	 24.73	-2	1926117..1926302	+	61	57867780	-	SERP1905	-	hypothetical protein
1867	 32.80	0	1926619..1926807	-	62	57867781	-	SERP1906	-	hypothetical protein
1868	 30.03	0	1926825..1927460	-	211	57867788	-	SERP1907	-	HAD superfamily hydrolase
1869	 32.20	0	1927761..1928291	+	176	57867789	-	SERP1908	-	hypothetical protein
1870	 33.46	0	1928396..1929985	-	529	57867790	-	SERP1909	-	PTS system, IIBC components
1871	 29.79	0	1930183..1930944	+	253	57867791	-	SERP1910	-	phosphosugar-binding transcriptional regulator
1872	 33.43	0	1931485..1932498	+	337	57867792	-	SERP1911	-	ISSep1-like transposase
1873	 33.33	0	1933161..1933673	-	170	57867801	-	SERP1913	-	hypothetical protein
1874	 33.26	0	1933970..1935271	-	433	57867802	-	SERP1914	-	Na+/H+ antiporter, putative
1875	 29.42	0	1935577..1936164	-	195	57867803	-	SERP1915	-	hypothetical protein
1876	 33.33	0	1936208..1936819	-	203	57867804	-	SERP1916	-	hypothetical protein
1877	 39.34	+1	1937106..1937987	-	293	57867805	-	SERP1917	-	short chain dehydrogenase/reductase family oxidoreductase
1878	 35.21	0	1938084..1939202	-	372	57867806	-	SERP1918	-	amidohydrolase family protein
1879	 35.36	0	1939672..1940607	-	311	57867807	hutG	SERP1919	-	formimidoylglutamase
1880	 32.20	0	1940855..1942003	+	382	57867808	-	SERP1920	-	abortive infection family protein
1881	 24.07	-2	1942195..1942302	+	35	57867817	-	SERP1921	-	hypothetical protein
1882	 22.78	-2	1942408..1942587	-	59	57867818	-	SERP1922	-	hypothetical protein
1883	 20.97	-2	1942565..1942750	+	61	57867819	-	SERP1923	-	hypothetical protein
1884	 33.62	0	1942989..1943681	-	230	57867820	rpiA	SERP1924	-	ribose 5-phosphate isomerase
1885	 30.98	0	1943847..1944527	+	226	57867821	-	SERP1925	-	hypothetical protein
1886	 29.48	0	1944600..1945610	-	336	57867822	galM	SERP1926	-	aldose 1-epimerase
1887	 34.89	0	1946198..1947808	+	536	57867823	-	SERP1927	-	ribulokinase
1888	 29.41	0	1948055..1948156	-	33	57867824	-	SERP1928	-	hypothetical protein
1889	 34.23	0	1948267..1948377	+	36	57867825	-	SERP1929	-	hypothetical protein
1890	 35.76	+1	1949150..1949767	+	205	57867833	-	SERP1931	-	DNA-3-methyladenine glycosylase
1891	 28.61	0	1949922..1950725	-	267	57867834	-	SERP1932	-	hypothetical protein
1892	 31.91	0	1950722..1951282	-	186	57867835	-	SERP1933	-	hypothetical protein
1893	 36.14	+1	1951279..1951599	-	106	57867836	-	SERP1934	-	PadR family transcriptional regulator
1894	 33.58	0	1951916..1953124	+	402	57867837	gltS	SERP1935	-	sodium:glutamate symporter
1895	 36.67	+1	1953279..1954328	-	349	57867838	fni-2	SERP1937	-	isopentenyl pyrophosphate isomerase
1896	 29.85	0	1954368..1955315	-	315	57865357	corA	SERP1938	-	magnesium and cobalt transport protein CorA
1897	 33.12	0	1955422..1955898	+	158	57865366	-	SERP1939	-	hypothetical protein
1898	 29.74	0	1955901..1956290	+	129	57865367	-	SERP1940	-	hypothetical protein
1899	 33.44	0	1956426..1957325	-	299	57865368	-	SERP1941	-	esterase, putative
1900	 28.59	0	1957543..1958175	+	210	57865369	-	SERP1942	-	hypothetical protein
1901	 24.36	-2	1958158..1958313	-	51	57865370	-	SERP1943	-	hypothetical protein
1902	 33.59	0	1958356..1960332	-	658	57865371	-	SERP1944	-	EmrB/QacA family drug resistance transporter
1903	 34.88	0	1960345..1960992	-	215	57865372	-	SERP1945	-	drug transporter, putative
1904	 27.17	-1	1961133..1961684	+	183	57865373	-	SERP1946	-	TetR family transcriptional regulator
1905	 33.42	0	1961721..1962932	-	403	57865383	tcaB	SERP1947	-	tcaB protein
1906	 28.73	0	1962990..1964378	-	462	57865384	tcaA	SERP1948	-	tcaA protein
1907	 30.70	0	1964658..1965113	-	151	57865385	tcaR	SERP1949	-	transcriptional regulator TcaR
1908	 30.93	0	1965301..1966257	+	318	57865386	-	SERP1950	-	hypothetical protein
1909	 33.18	0	1966538..1967206	-	222	57865387	-	SERP1951	-	ABC transporter, ATP-binding protein
1910	 28.30	-1	1967206..1968258	-	350	57865388	-	SERP1952	-	ABC transporter, permease protein
1911	 30.67	0	1968390..1969064	+	224	57865389	-	SERP1953	-	DNA-binding response regulator
1912	 30.68	0	1969057..1970412	+	451	57865390	-	SERP1954	-	sensor histidine kinase
1913	 32.79	0	1970556..1972034	-	492	57865391	mqo-1	SERP1955	-	malate:quinone oxidoreductase
1914	 32.11	0	1972366..1973511	+	381	57865401	-	SERP1956	-	glycosyl transferase, group 1 family protein
1915	 33.52	0	1973716..1975317	-	533	57865402	-	SERP1957	-	L-lactate permease
1916	 29.40	0	1975667..1977346	+	559	57865403	-	SERP1958	-	TagF domain-containing protein
1917	 32.41	0	1977478..1978125	-	215	57865404	-	SERP1959	-	putative lipoprotein
1918	 29.78	0	1978254..1980419	-	721	57865405	tagF	SERP1960	-	teichoic acid biosynthesis protein F
1919	 31.67	0	1980691..1981230	-	179	57865406	-	SERP1961	-	acetyltransferase
1920	 36.76	+1	1981471..1982463	+	330	57865407	-	SERP1962	-	alcohol dehydrogenase, zinc-containing
1921	 36.82	+1	1982520..1982921	-	133	57865408	-	SERP1963	-	acetyltransferase
1922	 31.41	0	1982990..1983406	-	138	57865417	-	SERP1964	-	hypothetical protein
1923	 32.49	0	1986078..1987025	+	315	57865418	-	SERP1967	-	CorA family protein
1924	 34.37	0	1987115..1988560	-	481	57865419	-	SERP1968	-	PTS system, sucrose-specific IIBC components
1925	 32.28	0	1988714..1989091	+	125	57865420	-	SERP1969	-	hypothetical protein
1926	 29.17	0	1989454..1989549	+	31	57865421	-	SERP1970	-	hypothetical protein
1927	 18.92	-2	1989550..1989660	+	36	57865422	-	SERP1971	-	hypothetical protein
1928	 27.30	-1	1990253..1992358	+	701	57865431	-	SERP1972	-	AraC family transcriptional regulator
1929	 28.37	-1	1992431..1992853	+	140	57865432	-	SERP1973	-	general stress protein 26, putative
1930	 28.49	0	1993044..1993394	+	116	57865433	-	SERP1974	-	hypothetical protein
1931	 29.27	0	1993479..1993601	-	40	57865434	-	SERP1975	-	hypothetical protein
1932	 31.85	0	1993677..1994957	-	426	57865435	gltT	SERP1976	-	proton/sodium-glutamate symport protein
1933	 28.96	0	1995122..1995487	-	121	57865436	-	SERP1977	-	hypothetical protein
1934	 33.17	0	1995611..1996240	-	209	57865437	-	SERP1978	-	nitroreductase family protein
1935	 28.86	0	1996404..1996850	+	148	57865438	sarZ	SERP1979	-	MarR family transcriptional regulator
1936	 34.62	0	1997556..1998719	-	387	57865447	-	SERP1980	-	nitrite extrusion protein
1937	 32.57	0	1998976..1999632	-	218	57865448	-	SERP1981	-	transcriptional regulatory protein DegU, putative
1938	 32.56	0	1999661..2000695	-	344	57865449	-	SERP1982	-	sensor histidine kinase, putative
1939	 33.77	0	2000705..2001157	-	150	57865450	-	SERP1983	-	hypothetical protein
1940	 31.27	0	2001177..2001854	-	225	57865451	narI	SERP1984	-	respiratory nitrate reductase, gamma subunit
1941	 33.16	0	2001847..2002437	-	196	57865452	narJ	SERP1985	-	respiratory nitrate reductase, delta subunit
1942	 36.81	+1	2002415..2003968	-	517	57865453	narH	SERP1986	-	respiratory nitrate reductase, beta subunit
1943	 36.75	+1	2003958..2007641	-	1227	57865461	narG	SERP1987	-	respiratory nitrate reductase, alpha subunit
1944	 34.19	0	2007820..2008755	-	311	57865462	-	SERP1988	-	uroporphyrinogen-III methylase SirB, putative
1945	 32.06	0	2008746..2009060	-	104	57865463	nirD	SERP1989	-	nitrite reductase [NAD(P)H], small subunit
1946	 34.87	0	2009063..2011468	-	801	57865464	nirB	SERP1990	-	nitrite reductase [NAD(P)H], large subunit
1947	 26.67	-1	2011744..2011848	-	34	57865465	-	SERP1991	-	hypothetical protein
1948	 31.11	0	2011906..2012625	-	239	57865466	nirR	SERP1992	-	transcriptional regulator NirR
1949	 24.79	-2	2012615..2012731	-	38	57865467	-	SERP1993	-	hypothetical protein
1950	 31.91	0	2012875..2014350	+	491	57865477	-	SERP1994	-	ABC transporter, substrate-binding protein
1951	 32.05	0	2014631..2014786	+	51	57865478	-	SERP1995	-	truncated IS1272 transposase
1952	 35.75	+1	2015086..2015622	-	178	57865479	-	SERP1996	-	acetyltransferase
1953	 31.63	0	2016065..2016886	-	273	57865480	-	SERP1997	-	formate/nitrite transporter family protein
1954	 34.39	0	2017121..2017591	-	156	57865481	-	SERP1998	-	hypothetical protein
1955	 32.50	0	2017873..2018469	-	198	57865353	-	SERP1999	-	glutaredoxin, putative
1956	 30.58	0	2018493..2018855	-	120	57865354	-	SERP2000	-	putative lipoprotein
1957	 29.81	0	2019216..2020463	+	415	57865355	fmhA	SERP2001	-	fmhA protein
1958	 31.29	0	2020849..2020995	+	48	57865356	-	SERP2002	-	truncated IS1272 transposase
1959	 34.56	0	2021139..2021870	-	243	57865358	-	SERP2003	-	amino acid ABC transporter, ATP-binding protein
1960	 35.00	0	2021867..2022586	-	239	57865359	-	SERP2004	-	amino acid ABC transporter, permease protein
1961	 31.69	0	2022567..2023355	-	262	57865360	-	SERP2005	-	amino acid ABC transporter, amino acid-binding protein
1962	 31.43	0	2023570..2023674	+	34	57865361	-	SERP2006	-	hypothetical protein
1963	 35.81	+1	2023860..2024546	-	228	57865362	gpm	SERP2007	-	phosphoglycerate mutase
1964	 30.39	0	2024788..2025669	-	293	57865363	-	SERP2008	-	cation efflux family protein
32.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.