IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.10   STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1562	 32.31	0	1626679..1627167	-	162	57867508	-	SERP1597	-	hypothetical protein
1563	 31.29	0	1627183..1627476	-	97	57867509	-	SERP1598	-	hypothetical protein
1564	 27.06	-1	1627591..1628595	-	334	57867510	-	SERP1599	-	hypothetical protein
1565	 28.42	-1	1628607..1629887	-	426	57867511	-	SERP1600	-	hypothetical protein
1566	 28.07	-1	1630198..1631241	-	347	57867512	-	SERP1601	-	phage integrase family site specific recombinase
1567	 25.93	-1	1631834..1631941	-	35	57867513	-	SERP1602	-	hypothetical protein
1568	 31.00	0	1631925..1632353	-	142	57867523	-	SERP1603	-	hypothetical protein
1569	 21.07	-2	1632431..1632952	-	173	57867524	-	SERP1604	-	hypothetical protein
1570	 21.19	-2	1632952..1633404	-	150	57867525	-	SERP1605	-	hypothetical protein
1571	 24.67	-2	1633520..1634200	-	226	57867526	-	SERP1606	-	hypothetical protein
1572	 24.62	-2	1634229..1634492	-	87	57867527	-	SERP1607	-	hypothetical protein
1573	 32.72	0	1634585..1634908	-	107	57867528	-	SERP1608	-	hypothetical protein
1574	 27.58	-1	1634953..1635612	-	219	57867529	-	SERP1609	-	hypothetical protein
1575	 19.74	-2	1635765..1636154	-	129	57867530	-	SERP1610	-	hypothetical protein
1576	 24.90	-1	1636291..1636551	-	86	57867531	-	SERP1611	-	hypothetical protein
1577	 25.46	-1	1636626..1636841	-	71	57867541	-	SERP1612	-	hypothetical protein
1578	 30.70	0	1636893..1637006	-	37	57867542	-	SERP1613	-	hypothetical protein
1579	 38.25	+1	1637021..1637305	-	94	57867543	-	SERP1614	-	hypothetical protein
1580	 27.16	-1	1638658..1638819	-	53	57867544	-	SERP1615	-	hypothetical protein
1581	 30.23	0	1639084..1639341	-	85	57867545	-	SERP1616	-	hypothetical protein
1582	 32.62	0	1640612..1640752	+	46	57867546	-	SERP1617	-	hypothetical protein
1583	 27.85	-1	1641200..1642075	-	291	57867547	-	SERP1618	-	hypothetical protein
1584	 32.76	0	1642111..1644396	-	761	57867548	-	SERP1619	-	hypothetical protein
1585	 29.26	0	1644532..1646028	+	498	57867549	-	SERP1620	-	hypothetical protein
1586	 32.12	0	1646288..1646617	+	109	57867550	-	SERP1621	-	DNA-binding protein HU, putative
1587	 28.49	0	1646643..1646828	+	61	57867559	-	SERP1622	-	hypothetical protein
1588	 31.73	0	1646837..1648021	+	394	57867560	-	SERP1623	-	hypothetical protein
1589	 32.66	0	1649716..1650600	+	294	57867561	-	SERP1624	-	hypothetical protein
1590	 34.06	0	1650593..1652392	+	599	57867562	-	SERP1625	-	prophage, terminase, ATPase subunit, putative
1591	 31.86	0	1652410..1653972	+	520	57867563	-	SERP1626	-	hypothetical protein
1592	 34.20	0	1653965..1655344	+	459	57867564	-	SERP1627	-	hypothetical protein
1593	 37.41	+1	1655372..1655812	+	146	57867565	-	SERP1628	-	hypothetical protein
1594	 38.02	+1	1655851..1656852	+	333	57867566	-	SERP1629	-	hypothetical protein
1595	 31.70	0	1656927..1657478	+	183	57867567	-	SERP1630	-	hypothetical protein
1596	 28.28	-1	1657496..1657930	+	144	57867575	-	SERP1631	-	hypothetical protein
1597	 30.82	0	1657920..1658237	+	105	57867576	-	SERP1632	-	hypothetical protein
1598	 30.63	0	1658241..1658906	+	221	57867577	-	SERP1633	-	hypothetical protein
1599	 32.38	0	1658896..1659417	+	173	57867578	-	SERP1634	-	hypothetical protein
1600	 31.84	0	1659423..1660295	+	290	57867579	-	SERP1635	-	hypothetical protein
1601	 36.74	+1	1660334..1661125	+	263	57867580	-	SERP1636	-	hypothetical protein
1602	 29.03	0	1661209..1661766	+	185	57867581	-	SERP1637	-	hypothetical protein
1603	 36.29	+1	1661766..1662239	+	157	57867502	-	SERP1638	-	hypothetical protein
1604	 33.63	0	1662255..1663271	+	338	57867503	-	SERP1639	-	phage integrase family site specific recombinase
1605	 33.97	0	1663368..1671641	+	2757	57867504	-	SERP1640	-	M23/M37 peptidase domain-containing protein
1606	 30.55	0	1671663..1673744	+	693	57867514	-	SERP1641	-	hypothetical protein
1607	 31.47	0	1673805..1681850	+	2681	57867515	-	SERP1642	-	hypothetical protein
1608	 30.67	0	1681853..1682227	+	124	57867516	-	SERP1643	-	hypothetical protein
1609	 27.98	-1	1682220..1682387	+	55	57867517	-	SERP1644	-	hypothetical protein
1610	 33.45	0	1682429..1685098	+	889	57867518	-	SERP1645	-	hypothetical protein
1611	 30.09	0	1685145..1685606	+	153	57867519	-	SERP1646	-	hypothetical protein
1612	 31.38	0	1685588..1686100	+	170	57867520	-	SERP1647	-	hypothetical protein
1613	 33.33	0	1686122..1686451	+	109	57867521	xhlB	SERP1648	-	prophage, holin
1614	 32.00	0	1686503..1688896	+	797	57867522	-	SERP1649	-	lipase/acylhydrolase domain-containing protein
1615	 34.91	0	1689084..1690475	+	463	57867532	-	SERP1650	-	prophage, amidase, putative
1616	 29.85	0	1690551..1690751	-	66	57867533	-	SERP1651	-	hypothetical protein
1617	 26.55	-1	1691131..1691307	-	58	57867534	-	SERP1652	-	hypothetical protein
1618	 26.84	-1	1691446..1693092	-	548	57867535	-	SERP1653	-	hypothetical protein
1619	 34.98	0	1693235..1693840	-	201	57867536	-	SERP1654	-	cell wall surface anchor family protein
1620	 35.58	0	1694146..1694457	-	103	57867537	-	SERP1655	-	hypothetical protein
1621	 27.66	-1	1694543..1694824	-	93	57867538	-	SERP1656	-	hypothetical protein
1622	 31.45	0	1694970..1695605	-	211	57867539	-	SERP1657	-	redox-sensing transcriptional repressor Rex
1623	 32.25	0	1695953..1697887	+	644	57867540	-	SERP1658	-	ABC transporter, ATP-binding protein
1624	 30.56	0	1698060..1698167	-	35	57867551	-	SERP1659	-	hypothetical protein
1625	 29.56	0	1698229..1699845	+	538	57867552	-	SERP1660	-	MutS family protein
1626	 33.53	0	1699928..1700950	-	340	57867553	-	SERP1661	-	O-sialoglycoprotein endopeptidase
1627	 32.42	0	1700947..1701384	-	145	57867554	-	SERP1662	-	ribosomal-protein-alanine acetyltransferase, putative
1628	 32.13	0	1701381..1702043	-	220	57867555	-	SERP1663	-	hypothetical protein
1629	 31.17	0	1702024..1702485	-	153	57867556	-	SERP1664	-	hypothetical protein
1630	 38.31	+1	1702964..1704652	+	562	57867557	ilvD	SERP1665	-	dihydroxy-acid dehydratase
1631	 35.68	0	1704708..1706411	+	567	57867558	ilvB	SERP1666	-	acetolactate synthase, large subunit, biosynthetic type
1632	 27.35	-1	1706411..1706644	+	77	57867568	-	SERP1667	-	acetolactate synthase 1 regulatory subunit
1633	 35.52	0	1706761..1707765	+	334	57867569	ilvC	SERP1668	-	ketol-acid reductoisomerase
1634	 34.57	0	1707788..1709323	+	511	57867570	leuA	SERP1669	-	2-isopropylmalate synthase
1635	 33.24	0	1709320..1710363	+	347	57867571	leuB	SERP1670	-	3-isopropylmalate dehydrogenase
1636	 35.59	0	1710379..1711749	+	456	57867572	leuC	SERP1671	-	isopropylmalate isomerase large subunit
1637	 32.46	0	1711750..1712319	+	189	57867573	leuD	SERP1672	-	isopropylmalate isomerase small subunit
1638	 32.07	0	1712334..1713602	+	422	57867574	ilvA	SERP1673	-	threonine dehydratase
1639	 40.54	+2	1713700..1713810	-	36	57867584	-	SERP1674	-	hypothetical protein
1640	 32.68	0	1719919..1720374	-	151	57867585	-	SERP1675	-	hypothetical protein
1641	 31.75	0	1720367..1722517	-	716	57867586	-	SERP1676	-	S1 RNA-binding domain-containing protein
1642	 34.11	0	1722805..1723575	-	256	57867587	rpoF	SERP1677	-	RNA polymerase sigma factor SigB
1643	 32.71	0	1723550..1724029	-	159	57867588	rsbW	SERP1678	-	serine-protein kinase RsbW
1644	 33.94	0	1724031..1724357	-	108	57867589	rsbV	SERP1679	-	anti-anti-sigma factor RsbV
1645	 32.73	0	1724457..1725458	-	333	57867590	rsbU	SERP1680	-	sigma factor B regulator protein
1646	 30.03	0	1725803..1726165	-	120	57867591	-	SERP1681	-	PemK family transcriptional regulator
1647	 33.33	0	1726162..1726332	-	56	57867599	-	SERP1682	-	hypothetical protein
1648	 33.33	0	1726419..1727567	-	382	57867600	alr	SERP1683	-	alanine racemase
1649	 32.49	0	1727634..1727987	-	117	57867601	acpS	SERP1684	-	holo-(acyl-carrier-protein) synthase
1650	 25.69	-1	1728035..1728544	-	169	57867602	-	SERP1685	-	hypothetical protein
1651	 29.61	0	1728531..1730036	-	501	57867603	-	SERP1686	-	hypothetical protein
1652	 26.25	-1	1730029..1730508	-	159	57867604	-	SERP1687	-	hypothetical protein
1653	 35.42	0	1730758..1732287	-	509	57867605	-	SERP1688	-	DEAD-box ATP dependent DNA helicase
1654	 31.49	0	1732587..1733942	-	451	57867606	murF	SERP1689	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
1655	 31.19	0	1733954..1735027	-	357	57867614	ddl	SERP1690	-	D-alanyl-alanine synthetase A
1656	 30.12	0	1735418..1736629	+	403	57867615	-	SERP1691	-	cell cycle protein FtsW
1657	 26.09	-1	1736728..1736865	-	45	57867616	-	SERP1692	-	hypothetical protein
1658	 28.57	0	1737008..1737217	-	69	57867617	-	SERP1693	-	hypothetical protein
1659	 33.33	0	1737224..1737517	-	97	57867618	-	SERP1694	-	hypothetical protein
1660	 32.17	0	1737709..1739175	+	488	57867619	cls-2	SERP1695	-	cardiolipin synthetase
1661	 31.35	0	1739357..1740010	+	217	57867620	-	SERP1696	-	HD domain-containing protein
32.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.