IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.10   STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1521	 29.73	0	1602333..1602554	-	73	57867431	-	SERP1556	-	hypothetical protein
1522	 27.68	-1	1602574..1602750	-	58	57867432	-	SERP1557	-	hypothetical protein
1523	 24.49	-2	1602743..1603285	-	180	57867433	-	SERP1558	-	hypothetical protein
1524	 28.57	0	1603301..1603573	-	90	57867434	-	SERP1559	-	hypothetical protein
1525	 28.85	0	1603599..1603754	-	51	57867444	-	SERP1560	-	phage transcriptional activator-related protein
1526	 28.42	-1	1603751..1604035	-	94	57867445	-	SERP1561	-	hypothetical protein
1527	 29.03	0	1604051..1604236	-	61	57867446	-	SERP1562	-	hypothetical protein
1528	 28.89	0	1604221..1604400	-	59	57867447	-	SERP1563	-	hypothetical protein
1529	 27.12	-1	1604416..1604898	-	160	57867448	-	SERP1564	-	hypothetical protein
1530	 30.39	0	1605095..1605298	-	67	57867449	-	SERP1565	-	hypothetical protein
1531	 26.97	-1	1605303..1605569	-	88	57867450	-	SERP1566	-	hypothetical protein
1532	 33.70	0	1605591..1605866	-	91	57867451	-	SERP1567	-	hypothetical protein
1533	 26.25	-1	1605889..1606128	-	79	57867452	-	SERP1568	-	hypothetical protein
1534	 26.22	-1	1606150..1606374	-	74	57867462	-	SERP1569	-	hypothetical protein
1535	 31.61	0	1606380..1606727	-	115	57867463	-	SERP1570	-	nuclease family protein
1536	 32.85	0	1606724..1607134	-	136	57867464	-	SERP1571	-	hypothetical protein
1537	 36.36	+1	1607174..1607437	-	87	57867465	-	SERP1572	-	hypothetical protein
1538	 28.16	-1	1607440..1607748	-	102	57867466	-	SERP1573	-	hypothetical protein
1539	 28.83	0	1607754..1607864	-	36	57867467	-	SERP1574	-	hypothetical protein
1540	 26.02	-1	1607845..1607967	-	40	57867468	-	SERP1575	-	hypothetical protein
1541	 30.07	0	1608040..1608315	-	91	57867469	-	SERP1576	-	hypothetical protein
1542	 27.78	-1	1608328..1608525	-	65	57867470	-	SERP1577	-	hypothetical protein
1543	 29.64	0	1608536..1609375	-	279	57867480	-	SERP1578	-	hypothetical protein
1544	 34.67	0	1609626..1610300	+	224	57867481	-	SERP1579	-	IS431mec-like transposase
1545	 32.86	0	1610332..1610754	-	140	57867482	-	SERP1580	-	hypothetical protein
1546	 35.60	0	1610764..1611249	-	161	57867483	folA-2	SERP1581	-	dihydrofolate reductase
1547	 32.08	0	1611291..1612247	-	318	57867484	thyA	SERP1582	-	thymidylate synthase
1548	 33.64	0	1612361..1612684	+	107	57867485	-	SERP1583	-	IS431mec-like transposase
1549	 36.57	+1	1612762..1613934	+	390	57867486	-	SERP1584	-	IS256-like transposase
1550	 24.65	-2	1614064..1615503	-	479	57867487	aacA	SERP1585	-	6'-aminoglycoside N-acetyltransferase/2''-aminoglycoside phosphotransferase
1551	 24.68	-2	1615504..1615896	-	130	57867488	-	SERP1586	-	acetyltransferase
1552	 36.57	+1	1615953..1617125	-	390	57867489	-	SERP1587	-	IS256-like transposase
1553	 34.52	0	1617188..1617610	+	140	57867490	-	SERP1588	-	IS431mec-like transposase
1554	 27.24	-1	1617909..1618646	-	245	57867491	-	SERP1589	-	hypothetical protein
1555	 30.11	0	1618839..1620605	-	588	57867492	-	SERP1590	-	single-stranded-DNA-specific exonuclease RecJ, putative
1556	 29.83	0	1620608..1621720	-	370	57867493	-	SERP1591	-	hypothetical protein
1557	 32.22	0	1621737..1623269	-	510	57867494	-	SERP1592	-	hypothetical protein
1558	 29.87	0	1623291..1623809	-	172	57867495	-	SERP1593	-	hypothetical protein
1559	 31.89	0	1623886..1624854	-	322	57867505	-	SERP1594	-	hypothetical protein
1560	 31.98	0	1624978..1625937	-	319	57867506	-	SERP1595	-	hypothetical protein
1561	 33.33	0	1625981..1626661	-	226	57867507	-	SERP1596	-	hypothetical protein
1562	 32.31	0	1626679..1627167	-	162	57867508	-	SERP1597	-	hypothetical protein
1563	 31.29	0	1627183..1627476	-	97	57867509	-	SERP1598	-	hypothetical protein
1564	 27.06	-1	1627591..1628595	-	334	57867510	-	SERP1599	-	hypothetical protein
1565	 28.42	-1	1628607..1629887	-	426	57867511	-	SERP1600	-	hypothetical protein
1566	 28.07	-1	1630198..1631241	-	347	57867512	-	SERP1601	-	phage integrase family site specific recombinase
1567	 25.93	-1	1631834..1631941	-	35	57867513	-	SERP1602	-	hypothetical protein
1568	 31.00	0	1631925..1632353	-	142	57867523	-	SERP1603	-	hypothetical protein
1569	 21.07	-2	1632431..1632952	-	173	57867524	-	SERP1604	-	hypothetical protein
1570	 21.19	-2	1632952..1633404	-	150	57867525	-	SERP1605	-	hypothetical protein
1571	 24.67	-2	1633520..1634200	-	226	57867526	-	SERP1606	-	hypothetical protein
1572	 24.62	-2	1634229..1634492	-	87	57867527	-	SERP1607	-	hypothetical protein
1573	 32.72	0	1634585..1634908	-	107	57867528	-	SERP1608	-	hypothetical protein
1574	 27.58	-1	1634953..1635612	-	219	57867529	-	SERP1609	-	hypothetical protein
1575	 19.74	-2	1635765..1636154	-	129	57867530	-	SERP1610	-	hypothetical protein
1576	 24.90	-1	1636291..1636551	-	86	57867531	-	SERP1611	-	hypothetical protein
1577	 25.46	-1	1636626..1636841	-	71	57867541	-	SERP1612	-	hypothetical protein
1578	 30.70	0	1636893..1637006	-	37	57867542	-	SERP1613	-	hypothetical protein
1579	 38.25	+1	1637021..1637305	-	94	57867543	-	SERP1614	-	hypothetical protein
1580	 27.16	-1	1638658..1638819	-	53	57867544	-	SERP1615	-	hypothetical protein
1581	 30.23	0	1639084..1639341	-	85	57867545	-	SERP1616	-	hypothetical protein
1582	 32.62	0	1640612..1640752	+	46	57867546	-	SERP1617	-	hypothetical protein
1583	 27.85	-1	1641200..1642075	-	291	57867547	-	SERP1618	-	hypothetical protein
1584	 32.76	0	1642111..1644396	-	761	57867548	-	SERP1619	-	hypothetical protein
1585	 29.26	0	1644532..1646028	+	498	57867549	-	SERP1620	-	hypothetical protein
1586	 32.12	0	1646288..1646617	+	109	57867550	-	SERP1621	-	DNA-binding protein HU, putative
1587	 28.49	0	1646643..1646828	+	61	57867559	-	SERP1622	-	hypothetical protein
1588	 31.73	0	1646837..1648021	+	394	57867560	-	SERP1623	-	hypothetical protein
1589	 32.66	0	1649716..1650600	+	294	57867561	-	SERP1624	-	hypothetical protein
1590	 34.06	0	1650593..1652392	+	599	57867562	-	SERP1625	-	prophage, terminase, ATPase subunit, putative
1591	 31.86	0	1652410..1653972	+	520	57867563	-	SERP1626	-	hypothetical protein
1592	 34.20	0	1653965..1655344	+	459	57867564	-	SERP1627	-	hypothetical protein
1593	 37.41	+1	1655372..1655812	+	146	57867565	-	SERP1628	-	hypothetical protein
1594	 38.02	+1	1655851..1656852	+	333	57867566	-	SERP1629	-	hypothetical protein
1595	 31.70	0	1656927..1657478	+	183	57867567	-	SERP1630	-	hypothetical protein
1596	 28.28	-1	1657496..1657930	+	144	57867575	-	SERP1631	-	hypothetical protein
1597	 30.82	0	1657920..1658237	+	105	57867576	-	SERP1632	-	hypothetical protein
1598	 30.63	0	1658241..1658906	+	221	57867577	-	SERP1633	-	hypothetical protein
1599	 32.38	0	1658896..1659417	+	173	57867578	-	SERP1634	-	hypothetical protein
1600	 31.84	0	1659423..1660295	+	290	57867579	-	SERP1635	-	hypothetical protein
1601	 36.74	+1	1660334..1661125	+	263	57867580	-	SERP1636	-	hypothetical protein
1602	 29.03	0	1661209..1661766	+	185	57867581	-	SERP1637	-	hypothetical protein
1603	 36.29	+1	1661766..1662239	+	157	57867502	-	SERP1638	-	hypothetical protein
1604	 33.63	0	1662255..1663271	+	338	57867503	-	SERP1639	-	phage integrase family site specific recombinase
1605	 33.97	0	1663368..1671641	+	2757	57867504	-	SERP1640	-	M23/M37 peptidase domain-containing protein
1606	 30.55	0	1671663..1673744	+	693	57867514	-	SERP1641	-	hypothetical protein
1607	 31.47	0	1673805..1681850	+	2681	57867515	-	SERP1642	-	hypothetical protein
1608	 30.67	0	1681853..1682227	+	124	57867516	-	SERP1643	-	hypothetical protein
1609	 27.98	-1	1682220..1682387	+	55	57867517	-	SERP1644	-	hypothetical protein
1610	 33.45	0	1682429..1685098	+	889	57867518	-	SERP1645	-	hypothetical protein
1611	 30.09	0	1685145..1685606	+	153	57867519	-	SERP1646	-	hypothetical protein
1612	 31.38	0	1685588..1686100	+	170	57867520	-	SERP1647	-	hypothetical protein
1613	 33.33	0	1686122..1686451	+	109	57867521	xhlB	SERP1648	-	prophage, holin
1614	 32.00	0	1686503..1688896	+	797	57867522	-	SERP1649	-	lipase/acylhydrolase domain-containing protein
1615	 34.91	0	1689084..1690475	+	463	57867532	-	SERP1650	-	prophage, amidase, putative
1616	 29.85	0	1690551..1690751	-	66	57867533	-	SERP1651	-	hypothetical protein
1617	 26.55	-1	1691131..1691307	-	58	57867534	-	SERP1652	-	hypothetical protein
1618	 26.84	-1	1691446..1693092	-	548	57867535	-	SERP1653	-	hypothetical protein
1619	 34.98	0	1693235..1693840	-	201	57867536	-	SERP1654	-	cell wall surface anchor family protein
1620	 35.58	0	1694146..1694457	-	103	57867537	-	SERP1655	-	hypothetical protein
32.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.