IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.10   STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1466	 29.04	0	1567768..1569306	-	512	57867393	-	SERP1501	-	hypothetical protein
1467	 27.32	-1	1569296..1569877	-	193	57867394	-	SERP1502	-	DNA-binding protein, putative
1468	 24.24	-2	1569969..1570100	-	43	57867395	-	SERP1503	-	hypothetical protein
1469	 32.01	0	1570079..1570684	-	201	57867396	-	SERP1504	-	hypothetical protein
1470	 28.54	0	1570656..1571051	-	131	57867397	-	SERP1505	-	hypothetical protein
1471	 32.93	0	1571053..1571799	-	248	57867398	-	SERP1506	-	hypothetical protein
1472	 26.67	-1	1571812..1572051	-	79	57867399	-	SERP1507	-	hypothetical protein
1473	 31.73	0	1572067..1572315	-	82	57867400	-	SERP1508	-	thioredoxin, putative
1474	 31.84	0	1572356..1572958	-	200	57867409	-	SERP1509	-	hypothetical protein
1475	 32.75	0	1572986..1574008	-	340	57867410	nrdF	SERP1510	-	ribonucleotide-diphosphate reductase subunit beta
1476	 34.47	0	1574054..1574317	-	87	57867411	-	SERP1511	-	truncated ribonucleoside-diphosphate reductase 2 alpha subunit
1477	 29.45	0	1574601..1575425	-	274	57867412	-	SERP1512	-	HNH endonuclease family protein
1478	 31.03	0	1575579..1578488	-	969	57867420	-	SERP1513	-	truncated ribonucleoside-diphosphate reductase 2, alpha subunit
1479	 29.98	0	1578510..1578956	-	148	57867421	-	SERP1514	-	hypothetical protein
1480	 33.57	0	1578956..1579369	-	137	57867422	nrdI-2	SERP1515	-	nrdI protein
1481	 28.10	-1	1579399..1579551	-	50	57867423	-	SERP1516	-	hypothetical protein
1482	 32.05	0	1579570..1580271	-	233	57867424	-	SERP1517	-	hypothetical protein
1483	 30.14	0	1580283..1580783	-	166	57867425	-	SERP1518	-	hypothetical protein
1484	 28.98	0	1580918..1581514	-	198	57867426	-	SERP1519	-	hypothetical protein
1485	 28.57	0	1581514..1581744	-	76	57867427	-	SERP1520	-	hypothetical protein
1486	 30.05	0	1581758..1581940	-	60	57867435	-	SERP1521	-	hypothetical protein
1487	 25.96	-1	1581943..1582254	-	103	57867436	-	SERP1522	-	hypothetical protein
1488	 32.84	0	1582329..1583336	-	335	57867437	-	SERP1523	-	DNA-cytosine methyltransferase
1489	 29.26	0	1583342..1584028	-	228	57867438	-	SERP1524	-	methyltransferase domain-containing protein
1490	 32.81	0	1584018..1584209	-	63	57867439	-	SERP1525	-	hypothetical protein
1491	 32.52	0	1584202..1584813	-	203	57867440	-	SERP1526	-	hypothetical protein
1492	 27.87	-1	1584828..1585010	-	60	57867441	-	SERP1527	-	hypothetical protein
1493	 28.57	0	1585010..1585261	-	83	57867442	-	SERP1528	-	hypothetical protein
1494	 31.61	0	1585418..1585591	-	57	57867443	-	SERP1529	-	hypothetical protein
1495	 28.12	-1	1585572..1585859	-	95	57867453	-	SERP1530	-	hypothetical protein
1496	 28.46	0	1585852..1586118	-	88	57867454	-	SERP1531	-	hypothetical protein
1497	 31.61	0	1586130..1586303	-	57	57867455	-	SERP1532	-	hypothetical protein
1498	 30.00	0	1586417..1586806	-	129	57867456	-	SERP1533	-	hypothetical protein
1499	 30.33	0	1586894..1588192	-	432	57867457	-	SERP1534	-	DNA ligase, ATP-dependent
1500	 28.89	0	1588202..1588516	-	104	57867458	-	SERP1535	-	hypothetical protein
1501	 32.55	0	1588654..1589034	-	126	57867459	-	SERP1536	-	hypothetical protein
1502	 31.64	0	1589146..1591632	-	828	57867460	-	SERP1537	-	DNA polymerase III, alpha subunit, putative
1503	 31.33	0	1592095..1593543	-	482	57867461	-	SERP1538	-	DNA polymerase III, alpha subunit, truncation
1504	 30.93	0	1593556..1593930	-	124	57867471	-	SERP1539	-	hypothetical protein
1505	 39.39	+1	1594097..1594657	+	186	57867472	-	SERP1540	-	hypothetical protein
1506	 28.15	-1	1595010..1595414	+	134	57867473	-	SERP1541	-	hypothetical protein
1507	 34.07	0	1595497..1595631	+	44	57867474	-	SERP1542	-	hypothetical protein
1508	 25.86	-1	1595662..1596303	-	213	57867475	-	SERP1543	-	hypothetical protein
1509	 27.94	-1	1596409..1597131	-	240	57867476	-	SERP1544	-	putative lipoprotein
1510	 26.59	-1	1597240..1598040	-	266	57867477	-	SERP1545	-	hypothetical protein
1511	 25.45	-1	1598044..1598538	-	164	57867478	-	SERP1546	-	hypothetical protein
1512	 24.07	-2	1598595..1598864	-	89	57867479	-	SERP1547	-	hypothetical protein
1513	 27.78	-1	1598848..1599063	-	71	57867496	-	SERP1548	-	hypothetical protein
1514	 31.31	0	1599342..1599737	-	131	57867497	-	SERP1549	-	death-on-curing family protein
1515	 32.74	0	1599737..1599904	-	55	57867498	-	SERP1550	-	hypothetical protein
1516	 29.52	0	1599933..1600037	-	34	57867499	-	SERP1551	-	hypothetical protein
1517	 26.20	-1	1600130..1600648	-	172	57867500	-	SERP1552	-	hypothetical protein
1518	 25.65	-1	1600648..1601298	-	216	57867501	-	SERP1553	-	hypothetical protein
1519	 26.17	-1	1601298..1601618	-	106	57867429	-	SERP1554	-	hypothetical protein
1520	 31.82	0	1601608..1602333	-	241	57867430	-	SERP1555	-	serine/threonine protein phosphatase, putative
1521	 29.73	0	1602333..1602554	-	73	57867431	-	SERP1556	-	hypothetical protein
1522	 27.68	-1	1602574..1602750	-	58	57867432	-	SERP1557	-	hypothetical protein
1523	 24.49	-2	1602743..1603285	-	180	57867433	-	SERP1558	-	hypothetical protein
1524	 28.57	0	1603301..1603573	-	90	57867434	-	SERP1559	-	hypothetical protein
1525	 28.85	0	1603599..1603754	-	51	57867444	-	SERP1560	-	phage transcriptional activator-related protein
1526	 28.42	-1	1603751..1604035	-	94	57867445	-	SERP1561	-	hypothetical protein
1527	 29.03	0	1604051..1604236	-	61	57867446	-	SERP1562	-	hypothetical protein
1528	 28.89	0	1604221..1604400	-	59	57867447	-	SERP1563	-	hypothetical protein
1529	 27.12	-1	1604416..1604898	-	160	57867448	-	SERP1564	-	hypothetical protein
1530	 30.39	0	1605095..1605298	-	67	57867449	-	SERP1565	-	hypothetical protein
1531	 26.97	-1	1605303..1605569	-	88	57867450	-	SERP1566	-	hypothetical protein
1532	 33.70	0	1605591..1605866	-	91	57867451	-	SERP1567	-	hypothetical protein
1533	 26.25	-1	1605889..1606128	-	79	57867452	-	SERP1568	-	hypothetical protein
1534	 26.22	-1	1606150..1606374	-	74	57867462	-	SERP1569	-	hypothetical protein
1535	 31.61	0	1606380..1606727	-	115	57867463	-	SERP1570	-	nuclease family protein
1536	 32.85	0	1606724..1607134	-	136	57867464	-	SERP1571	-	hypothetical protein
1537	 36.36	+1	1607174..1607437	-	87	57867465	-	SERP1572	-	hypothetical protein
1538	 28.16	-1	1607440..1607748	-	102	57867466	-	SERP1573	-	hypothetical protein
1539	 28.83	0	1607754..1607864	-	36	57867467	-	SERP1574	-	hypothetical protein
1540	 26.02	-1	1607845..1607967	-	40	57867468	-	SERP1575	-	hypothetical protein
1541	 30.07	0	1608040..1608315	-	91	57867469	-	SERP1576	-	hypothetical protein
1542	 27.78	-1	1608328..1608525	-	65	57867470	-	SERP1577	-	hypothetical protein
1543	 29.64	0	1608536..1609375	-	279	57867480	-	SERP1578	-	hypothetical protein
1544	 34.67	0	1609626..1610300	+	224	57867481	-	SERP1579	-	IS431mec-like transposase
1545	 32.86	0	1610332..1610754	-	140	57867482	-	SERP1580	-	hypothetical protein
1546	 35.60	0	1610764..1611249	-	161	57867483	folA-2	SERP1581	-	dihydrofolate reductase
1547	 32.08	0	1611291..1612247	-	318	57867484	thyA	SERP1582	-	thymidylate synthase
1548	 33.64	0	1612361..1612684	+	107	57867485	-	SERP1583	-	IS431mec-like transposase
1549	 36.57	+1	1612762..1613934	+	390	57867486	-	SERP1584	-	IS256-like transposase
1550	 24.65	-2	1614064..1615503	-	479	57867487	aacA	SERP1585	-	6'-aminoglycoside N-acetyltransferase/2''-aminoglycoside phosphotransferase
1551	 24.68	-2	1615504..1615896	-	130	57867488	-	SERP1586	-	acetyltransferase
1552	 36.57	+1	1615953..1617125	-	390	57867489	-	SERP1587	-	IS256-like transposase
1553	 34.52	0	1617188..1617610	+	140	57867490	-	SERP1588	-	IS431mec-like transposase
1554	 27.24	-1	1617909..1618646	-	245	57867491	-	SERP1589	-	hypothetical protein
1555	 30.11	0	1618839..1620605	-	588	57867492	-	SERP1590	-	single-stranded-DNA-specific exonuclease RecJ, putative
1556	 29.83	0	1620608..1621720	-	370	57867493	-	SERP1591	-	hypothetical protein
1557	 32.22	0	1621737..1623269	-	510	57867494	-	SERP1592	-	hypothetical protein
1558	 29.87	0	1623291..1623809	-	172	57867495	-	SERP1593	-	hypothetical protein
1559	 31.89	0	1623886..1624854	-	322	57867505	-	SERP1594	-	hypothetical protein
1560	 31.98	0	1624978..1625937	-	319	57867506	-	SERP1595	-	hypothetical protein
1561	 33.33	0	1625981..1626661	-	226	57867507	-	SERP1596	-	hypothetical protein
1562	 32.31	0	1626679..1627167	-	162	57867508	-	SERP1597	-	hypothetical protein
1563	 31.29	0	1627183..1627476	-	97	57867509	-	SERP1598	-	hypothetical protein
1564	 27.06	-1	1627591..1628595	-	334	57867510	-	SERP1599	-	hypothetical protein
1565	 28.42	-1	1628607..1629887	-	426	57867511	-	SERP1600	-	hypothetical protein
32.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.