IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.10   STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1425	 31.52	0	1521751..1523130	+	459	57867406	aldA-1	SERP1456	-	aldehyde dehydrogenase
1426	 33.72	0	1523242..1524270	-	342	57867407	-	SERP1457	-	hypothetical protein
1427	 29.71	0	1524506..1524643	+	45	57867408	-	SERP1458	-	hypothetical protein
1428	 23.62	-2	1524695..1525075	-	126	57867413	blaI-1	SERP1459	-	penicillinase repressor
1429	 24.97	-1	1525065..1526822	-	585	57867414	blaR1-1	SERP1460	-	regulatory protein BlaR1
1430	 26.48	-1	1526929..1527774	+	281	57867415	blaZ-1	SERP1461	-	beta-lactamase
1431	 24.65	-2	1528541..1529911	-	456	57867416	-	SERP1463	-	hypothetical protein
1432	 24.32	-2	1529916..1530281	-	121	57867417	-	SERP1464	-	Tn554-related, transposase C
1433	 27.12	-1	1530290..1532317	-	675	57867418	-	SERP1465	-	Tn554-related, transposase B
1434	 26.15	-1	1532356..1533468	-	370	57867419	-	SERP1466	-	Tn554-related, transposase A
1435	 28.07	-1	1534168..1534338	-	56	57867428	-	SERP1468	-	hypothetical protein
1436	 32.47	0	1534718..1535758	+	346	57867332	-	SERP1469	-	hypothetical protein
1437	 26.88	-1	1535812..1536648	-	278	57867333	-	SERP1470	-	hypothetical protein
1438	 26.16	-1	1536645..1537202	-	185	57867334	-	SERP1471	-	hypothetical protein
1439	 25.46	-1	1537255..1537800	-	181	57867335	-	SERP1472	-	hypothetical protein
1440	 26.64	-1	1538530..1539261	-	243	57867336	-	SERP1474	-	hypothetical protein
1441	 28.88	0	1539261..1540136	-	291	57867345	-	SERP1475	-	ABC transporter, ATP-binding protein
1442	 27.88	-1	1540154..1540813	-	219	57867346	-	SERP1476	-	hypothetical protein
1443	 27.87	-1	1540794..1541708	-	304	57867347	-	SERP1477	-	ABC transporter, ATP-binding protein
1444	 29.89	0	1541708..1542085	-	125	57867348	-	SERP1478	-	GntR family transcriptional regulator
1445	 26.90	-1	1542402..1542572	-	56	57867349	-	SERP1479	-	hypothetical protein
1446	 37.50	+1	1542759..1542854	-	31	57867350	-	SERP1480	-	hypothetical protein
1447	 32.25	0	1543045..1544334	+	429	57867351	-	SERP1481	-	hypothetical protein
1448	 33.86	0	1544501..1550422	-	1973	57867352	-	SERP1482	-	cell wall surface anchor family protein
1449	 31.28	0	1550599..1551672	-	357	57867362	-	SERP1483	-	cell wall surface anchor family protein
1450	 37.78	+1	1552090..1553709	-	539	57867363	groEL	SERP1484	-	chaperonin GroEL
1451	 34.74	0	1553765..1554049	-	94	57867364	groES	SERP1485	-	co-chaperonin GroES
1452	 33.74	0	1554224..1554964	+	246	57867365	-	SERP1486	-	abortive infection family protein
1453	 32.30	0	1555024..1556469	-	481	57867366	sdrH	SERP1487	-	sdrH protein
1454	 31.70	0	1556812..1557606	+	264	57867367	-	SERP1488	-	carbon-nitrogen family hydrolase
1455	 26.92	-1	1557987..1558064	-	25	57867843	hld	SERP1489	-	delta-hemolysin
1456	 28.21	-1	1558381..1558965	+	194	57867368	agrB	SERP1490	-	accessory gene regulator protein B
1457	 31.21	0	1558949..1559089	+	46	57867369	agrD	SERP1491	-	accessory gene regulator protein D
1458	 27.98	-1	1559116..1560405	+	429	57867377	agrC	SERP1492	-	accessory gene regulator protein C
1459	 30.06	0	1560467..1561138	+	223	57867378	agrA	SERP1493	-	accessory gene regulator protein A
1460	 34.27	0	1561206..1562165	-	319	57867379	-	SERP1494	-	fructokinase, putative
1461	 34.42	0	1562172..1563644	-	490	57867380	cscA	SERP1495	-	sucrose-6-phosphate hydrolase
1462	 26.88	-1	1563810..1563902	-	30	57867381	-	SERP1496	-	hypothetical protein
1463	 33.02	0	1563904..1564857	-	317	57867382	scrR	SERP1497	-	sucrose operon repressor
1464	 34.53	0	1564992..1566242	-	416	57867383	-	SERP1498	-	ammonium transporter family protein
1465	 36.89	+1	1566662..1566886	-	74	57867384	-	SERP1499	-	hypothetical protein
1466	 29.04	0	1567768..1569306	-	512	57867393	-	SERP1501	-	hypothetical protein
1467	 27.32	-1	1569296..1569877	-	193	57867394	-	SERP1502	-	DNA-binding protein, putative
1468	 24.24	-2	1569969..1570100	-	43	57867395	-	SERP1503	-	hypothetical protein
1469	 32.01	0	1570079..1570684	-	201	57867396	-	SERP1504	-	hypothetical protein
1470	 28.54	0	1570656..1571051	-	131	57867397	-	SERP1505	-	hypothetical protein
1471	 32.93	0	1571053..1571799	-	248	57867398	-	SERP1506	-	hypothetical protein
1472	 26.67	-1	1571812..1572051	-	79	57867399	-	SERP1507	-	hypothetical protein
1473	 31.73	0	1572067..1572315	-	82	57867400	-	SERP1508	-	thioredoxin, putative
1474	 31.84	0	1572356..1572958	-	200	57867409	-	SERP1509	-	hypothetical protein
1475	 32.75	0	1572986..1574008	-	340	57867410	nrdF	SERP1510	-	ribonucleotide-diphosphate reductase subunit beta
1476	 34.47	0	1574054..1574317	-	87	57867411	-	SERP1511	-	truncated ribonucleoside-diphosphate reductase 2 alpha subunit
1477	 29.45	0	1574601..1575425	-	274	57867412	-	SERP1512	-	HNH endonuclease family protein
1478	 31.03	0	1575579..1578488	-	969	57867420	-	SERP1513	-	truncated ribonucleoside-diphosphate reductase 2, alpha subunit
1479	 29.98	0	1578510..1578956	-	148	57867421	-	SERP1514	-	hypothetical protein
1480	 33.57	0	1578956..1579369	-	137	57867422	nrdI-2	SERP1515	-	nrdI protein
1481	 28.10	-1	1579399..1579551	-	50	57867423	-	SERP1516	-	hypothetical protein
1482	 32.05	0	1579570..1580271	-	233	57867424	-	SERP1517	-	hypothetical protein
1483	 30.14	0	1580283..1580783	-	166	57867425	-	SERP1518	-	hypothetical protein
1484	 28.98	0	1580918..1581514	-	198	57867426	-	SERP1519	-	hypothetical protein
1485	 28.57	0	1581514..1581744	-	76	57867427	-	SERP1520	-	hypothetical protein
1486	 30.05	0	1581758..1581940	-	60	57867435	-	SERP1521	-	hypothetical protein
1487	 25.96	-1	1581943..1582254	-	103	57867436	-	SERP1522	-	hypothetical protein
1488	 32.84	0	1582329..1583336	-	335	57867437	-	SERP1523	-	DNA-cytosine methyltransferase
1489	 29.26	0	1583342..1584028	-	228	57867438	-	SERP1524	-	methyltransferase domain-containing protein
1490	 32.81	0	1584018..1584209	-	63	57867439	-	SERP1525	-	hypothetical protein
1491	 32.52	0	1584202..1584813	-	203	57867440	-	SERP1526	-	hypothetical protein
1492	 27.87	-1	1584828..1585010	-	60	57867441	-	SERP1527	-	hypothetical protein
1493	 28.57	0	1585010..1585261	-	83	57867442	-	SERP1528	-	hypothetical protein
1494	 31.61	0	1585418..1585591	-	57	57867443	-	SERP1529	-	hypothetical protein
1495	 28.12	-1	1585572..1585859	-	95	57867453	-	SERP1530	-	hypothetical protein
1496	 28.46	0	1585852..1586118	-	88	57867454	-	SERP1531	-	hypothetical protein
1497	 31.61	0	1586130..1586303	-	57	57867455	-	SERP1532	-	hypothetical protein
1498	 30.00	0	1586417..1586806	-	129	57867456	-	SERP1533	-	hypothetical protein
1499	 30.33	0	1586894..1588192	-	432	57867457	-	SERP1534	-	DNA ligase, ATP-dependent
1500	 28.89	0	1588202..1588516	-	104	57867458	-	SERP1535	-	hypothetical protein
1501	 32.55	0	1588654..1589034	-	126	57867459	-	SERP1536	-	hypothetical protein
1502	 31.64	0	1589146..1591632	-	828	57867460	-	SERP1537	-	DNA polymerase III, alpha subunit, putative
1503	 31.33	0	1592095..1593543	-	482	57867461	-	SERP1538	-	DNA polymerase III, alpha subunit, truncation
1504	 30.93	0	1593556..1593930	-	124	57867471	-	SERP1539	-	hypothetical protein
1505	 39.39	+1	1594097..1594657	+	186	57867472	-	SERP1540	-	hypothetical protein
1506	 28.15	-1	1595010..1595414	+	134	57867473	-	SERP1541	-	hypothetical protein
1507	 34.07	0	1595497..1595631	+	44	57867474	-	SERP1542	-	hypothetical protein
1508	 25.86	-1	1595662..1596303	-	213	57867475	-	SERP1543	-	hypothetical protein
1509	 27.94	-1	1596409..1597131	-	240	57867476	-	SERP1544	-	putative lipoprotein
1510	 26.59	-1	1597240..1598040	-	266	57867477	-	SERP1545	-	hypothetical protein
1511	 25.45	-1	1598044..1598538	-	164	57867478	-	SERP1546	-	hypothetical protein
1512	 24.07	-2	1598595..1598864	-	89	57867479	-	SERP1547	-	hypothetical protein
1513	 27.78	-1	1598848..1599063	-	71	57867496	-	SERP1548	-	hypothetical protein
1514	 31.31	0	1599342..1599737	-	131	57867497	-	SERP1549	-	death-on-curing family protein
1515	 32.74	0	1599737..1599904	-	55	57867498	-	SERP1550	-	hypothetical protein
1516	 29.52	0	1599933..1600037	-	34	57867499	-	SERP1551	-	hypothetical protein
1517	 26.20	-1	1600130..1600648	-	172	57867500	-	SERP1552	-	hypothetical protein
1518	 25.65	-1	1600648..1601298	-	216	57867501	-	SERP1553	-	hypothetical protein
1519	 26.17	-1	1601298..1601618	-	106	57867429	-	SERP1554	-	hypothetical protein
1520	 31.82	0	1601608..1602333	-	241	57867430	-	SERP1555	-	serine/threonine protein phosphatase, putative
1521	 29.73	0	1602333..1602554	-	73	57867431	-	SERP1556	-	hypothetical protein
1522	 27.68	-1	1602574..1602750	-	58	57867432	-	SERP1557	-	hypothetical protein
1523	 24.49	-2	1602743..1603285	-	180	57867433	-	SERP1558	-	hypothetical protein
1524	 28.57	0	1603301..1603573	-	90	57867434	-	SERP1559	-	hypothetical protein
32.10	MEAN

3.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.