IslandPathversion 1.0

IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.10 STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1332	 26.04	-1	1417760..1418047	+	95	57867287	-	SERP1361	-	hypothetical protein
1333	 29.52	0	1418574..1419308	+	244	57867288	-	SERP1362	-	hypothetical protein
1334	 32.79	0	1421818..1422372	-	184	57867289	-	SERP1365	-	hypothetical protein
1335	 33.68	0	1422508..1423956	-	482	57867290	hemG	SERP1366	-	protoporphyrinogen oxidase
1336	 34.20	0	1424049..1424972	-	307	57867298	hemH	SERP1367	-	ferrochelatase
1337	 35.07	0	1425049..1426083	-	344	57867299	hemE	SERP1368	-	uroporphyrinogen decarboxylase
1338	 30.56	0	1426403..1426906	+	167	57867300	-	SERP1369	-	RNAIII-activating protein TRAP
1339	 29.29	0	1427468..1428085	-	205	57867301	-	SERP1370	-	cadmium resistance family protein
1340	 28.51	0	1428144..1429367	-	407	57867302	-	SERP1371	-	ABC transporter, permease protein
1341	 30.09	0	1429360..1430100	-	246	57867303	-	SERP1372	-	ABC transporter, ATP-binding protein
1342	 30.05	0	1430230..1430655	+	141	57867304	-	SERP1373	-	HIT family protein
1343	 32.26	0	1430732..1431103	+	123	57867305	-	SERP1374	-	hypothetical protein
1344	 26.38	-1	1431269..1431829	+	186	57867314	-	SERP1375	-	hypothetical protein
1345	 28.32	-1	1432032..1433009	+	325	57867315	-	SERP1376	-	protein export protein PrsA, putative
1346	 36.19	+1	1433159..1433263	-	34	57867316	-	SERP1377	-	hypothetical protein
1347	 33.55	0	1433435..1434376	-	313	57867317	cbf1	SERP1378	-	3'-5' exoribonuclease YhaM
1348	 29.25	0	1434373..1437312	-	979	57867318	-	SERP1379	-	hypothetical protein
1349	 30.99	0	1437302..1438498	-	398	57867319	-	SERP1380	-	DNA repair exonuclease family protein
1350	 28.99	0	1438769..1439113	-	114	57867320	-	SERP1381	-	hypothetical protein
1351	 27.14	-1	1439186..1440316	-	376	57867321	-	SERP1382	-	hypothetical protein
1352	 31.83	0	1440498..1440962	-	154	57867330	-	SERP1383	-	Cro/CI family transcriptional regulator
1353	 31.73	0	1441233..1441856	-	207	57867331	-	SERP1384	-	LuxR family DNA-binding response regulator
1354	 31.39	0	1441849..1442982	-	377	57867267	-	SERP1385	-	sensor histidine kinase
1355	 31.88	0	1443141..1443965	+	274	57867268	-	SERP1386	-	ribosomal large subunit pseudouridine synthase D
1356	 34.42	0	1444326..1445711	-	461	57867269	fumC	SERP1387	-	fumarate hydratase
1357	 30.86	0	1445896..1446300	-	134	57867270	-	SERP1388	-	hypothetical protein
1358	 27.78	-1	1446456..1446635	-	59	57867278	-	SERP1389	-	hypothetical protein
1359	 32.83	0	1446659..1447258	-	199	57867279	-	SERP1390	-	glucosamine-6-phosphate isomerase family protein
1360	 32.27	0	1447416..1447886	-	156	57867280	-	SERP1391	-	RNA methyltransferase
1361	 35.01	0	1447883..1449013	-	376	57867281	-	SERP1392	-	iron-sulfur cluster-binding protein, putative
1362	 33.33	0	1449223..1449378	-	51	57867282	-	SERP1393	-	truncated IS1272 transposase
1363	 31.40	0	1449875..1450597	-	240	57867283	-	SERP1394	-	amino acid ABC transporter, ATP-binding protein, putative
1364	 31.00	0	1450590..1452047	-	485	57867284	-	SERP1395	-	amino acid ABC transporter, permease/amino acid-binding protein, putative
1365	 31.16	0	1452286..1453344	-	352	57867291	-	SERP1396	-	PTS system, IIC component, putative
1366	 31.68	0	1453570..1454418	-	282	57867292	sspA	SERP1397	-	glutamyl endopeptidase precursor SspA
1367	 32.23	0	1462924..1463376	-	150	57867293	-	SERP1398	-	FUR family transcriptional regulator
1368	 27.97	-1	1463472..1464422	-	316	57867294	-	SERP1399	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1369	 28.32	-1	1464425..1464883	-	152	57867295	bcp	SERP1400	-	bacterioferritin comigratory protein
1370	 37.36	+1	1464964..1466253	+	429	57867296	hemL-2	SERP1401	-	glutamate-1-semialdehyde aminotransferase
1371	 31.14	0	1466560..1467654	+	364	57867297	-	SERP1402	-	hypothetical protein
1372	 32.24	0	1467814..1469550	-	578	57867306	-	SERP1403	-	ABC transporter, permease/ATP-binding protein
1373	 28.83	0	1469571..1469681	+	36	57867307	-	SERP1404	-	hypothetical protein
1374	 30.76	0	1469792..1470334	-	180	57867308	-	SERP1405	-	hypothetical protein
1375	 33.91	0	1470441..1471484	-	347	57867309	mutY	SERP1406	-	A/G-specific adenine glycosylase
1376	 32.41	0	1471665..1472639	+	324	57867310	-	SERP1407	-	hypothetical protein
1377	 27.32	-1	1472825..1473655	-	276	57867311	-	SERP1408	-	hypothetical protein
1378	 30.63	0	1473664..1475181	-	505	57867312	-	SERP1409	-	ABC transporter, ATP-binding protein
1379	 32.30	0	1475197..1475487	-	96	57867313	-	SERP1410	-	hypothetical protein
1380	 28.98	0	1475504..1476307	-	267	57867322	recX	SERP1411	-	recombination regulator RecX
1381	 29.01	0	1476585..1477394	-	269	57867323	-	SERP1412	-	glycosyltransferase
1382	 34.87	0	1477715..1478233	-	172	57867324	-	SERP1413	-	ThiJ/PfpI family protein
1383	 31.48	0	1478533..1478694	-	53	57867325	-	SERP1414	-	hypothetical protein
1384	 32.46	0	1478853..1479995	+	380	57867326	-	SERP1415	-	radical SAM domain-containing protein
1385	 35.40	0	1480132..1480662	-	176	57867327	-	SERP1416	-	cytosolic long-chain acyl-CoA thioester hydrolase family protein
1386	 34.30	0	1480742..1481983	-	413	57867328	-	SERP1417	-	aminopeptidase family protein
1387	 30.09	0	1481985..1482200	-	71	57867329	-	SERP1418	-	hypothetical protein
1388	 34.41	0	1482341..1482805	+	154	57867337	-	SERP1419	-	phosphotyrosine protein phosphatase
1389	 32.28	0	1482813..1483097	+	94	57867338	-	SERP1420	-	hypothetical protein
1390	 31.38	0	1483504..1484682	+	392	57867339	-	SERP1421	-	ribonuclease BN, putative
1391	 33.97	0	1484739..1485368	-	209	57867340	vraR	SERP1422	-	DNA-binding response regulator VraR
1392	 29.51	0	1485358..1486404	-	348	57867341	vraS	SERP1423	-	sensor histidine kinase VraS
1393	 29.20	0	1486401..1487102	-	233	57867342	-	SERP1424	-	hypothetical protein
1394	 24.24	-2	1487117..1487512	-	131	57867343	-	SERP1425	-	hypothetical protein
1395	 35.71	0	1487661..1488416	-	251	57867344	map	SERP1426	-	methionine aminopeptidase
1396	 30.70	0	1488590..1489576	+	328	57867353	-	SERP1427	-	hypothetical protein
1397	 33.33	0	1489727..1490263	-	178	57867354	-	SERP1428	-	immunodominant antigen B, putative
1398	 33.06	0	1490704..1491429	-	241	57867355	-	SERP1429	-	cobyric acid synthase, putative
1399	 33.41	0	1491431..1492744	-	437	57867356	-	SERP1430	-	Mur ligase family protein
1400	 31.74	0	1492966..1493466	+	166	57867357	-	SERP1431	-	ferritin family protein
1401	 32.79	0	1493655..1494209	+	184	57867358	-	SERP1432	-	exonuclease
1402	 32.87	0	1494240..1495310	-	356	57867359	dinP	SERP1433	-	DNA-damage-inducible protein P
1403	 28.91	0	1495620..1496162	-	180	57867360	-	SERP1434	-	hypothetical protein
1404	 32.09	0	1496306..1497676	-	456	57867361	-	SERP1435	-	RNA methyltransferase
1405	 36.07	+1	1497756..1498706	-	316	57867370	-	SERP1436	-	putative lipid kinase
1406	 33.19	0	1498931..1500358	-	475	57867371	gatB	SERP1437	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1407	 34.09	0	1500371..1501828	-	485	57867372	gatA	SERP1438	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
1408	 34.98	0	1501830..1502132	-	100	57867373	gatC	SERP1439	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1409	 34.44	0	1502510..1504045	+	511	57867374	putP	SERP1440	-	proline permease
1410	 31.02	0	1504373..1505581	-	402	57867375	camS	SERP1441	-	hypothetical protein
1411	 34.33	0	1505601..1507598	-	665	57867376	ligA	SERP1442	-	DNA ligase, NAD-dependent
1412	 33.33	0	1507602..1509791	-	729	57867385	pcrA	SERP1443	-	ATP-dependent DNA helicase PcrA
1413	 32.18	0	1509788..1510480	-	230	57867386	-	SERP1444	-	geranylgeranylglyceryl phosphate synthase-like protein
1414	 32.34	0	1510804..1511106	-	100	57867387	-	SERP1445	-	hypothetical protein
1415	 34.95	0	1511231..1512526	-	431	57867388	purB	SERP1446	-	adenylosuccinate lyase
1416	 31.11	0	1512938..1513117	-	59	57867389	-	SERP1447	-	hypothetical protein
1417	 33.81	0	1513101..1513727	-	208	57867390	-	SERP1448	-	hypothetical protein
1418	 34.30	0	1513801..1514628	-	275	57867391	nadE	SERP1449	-	NAD synthetase
1419	 34.01	0	1514621..1516090	-	489	161486706	-	SERP1450	-	nicotinate phosphoribosyltransferase
1420	 31.74	0	1516282..1517349	+	355	57867401	-	SERP1451	-	nitric-oxide synthase, oxygenase subunit
1421	 31.47	0	1517368..1518171	+	267	57867402	pheA	SERP1452	-	prephenate dehydratase
1422	 31.42	0	1518624..1519721	-	365	57867403	-	SERP1453	-	hypothetical protein
1423	 31.17	0	1519913..1520467	+	184	57867404	-	SERP1454	-	isochorismatase family protein
1424	 32.26	0	1520522..1521451	+	309	57867405	ppaC	SERP1455	-	putative manganese-dependent inorganic pyrophosphatase
1425	 31.52	0	1521751..1523130	+	459	57867406	aldA-1	SERP1456	-	aldehyde dehydrogenase
1426	 33.72	0	1523242..1524270	-	342	57867407	-	SERP1457	-	hypothetical protein
1427	 29.71	0	1524506..1524643	+	45	57867408	-	SERP1458	-	hypothetical protein
1428	 23.62	-2	1524695..1525075	-	126	57867413	blaI-1	SERP1459	-	penicillinase repressor
1429	 24.97	-1	1525065..1526822	-	585	57867414	blaR1-1	SERP1460	-	regulatory protein BlaR1
1430	 26.48	-1	1526929..1527774	+	281	57867415	blaZ-1	SERP1461	-	beta-lactamase
1431	 24.65	-2	1528541..1529911	-	456	57867416	-	SERP1463	-	hypothetical protein
32.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.