IslandPathversion 1.0

IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.10 STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1304	 25.83	-1	1393531..1393650	+	39	57867229	-	SERP1332	-	hypothetical protein
1305	 27.08	-1	1393706..1394185	+	159	57867230	-	SERP1333	-	hypothetical protein
1306	 27.93	-1	1394191..1394634	+	147	57867231	-	SERP1334	-	hypothetical protein
1307	 27.70	-1	1394621..1395064	-	147	57867232	-	SERP1335	-	hypothetical protein
1308	 35.43	0	1395204..1395917	-	237	57867233	tal	SERP1336	-	putative translaldolase
1309	 22.65	-2	1396194..1396502	+	102	57867234	-	SERP1337	-	hypothetical protein
1310	 33.06	0	1396539..1396904	+	121	57867235	-	SERP1338	-	CrcB family protein
1311	 33.33	0	1396901..1397254	+	117	57867236	-	SERP1339	-	CrcB family protein
1312	 32.70	0	1397898..1398374	+	158	57867246	-	SERP1340	-	ISSep1-like transposase
1313	 34.39	0	1398493..1399155	-	220	57867247	-	SERP1341	-	Tn554 hypothetical protein
1314	 21.67	-2	1399547..1399606	+	19	57867845	-	SERP1342	-	Tn554, peptide L
1315	 32.51	0	1399689..1400420	+	243	57867248	ermA-2	SERP1343	-	Tn554, rRNA adenine N-6-methyltransferase
1316	 36.40	+1	1400546..1401328	-	260	57867249	spc-2	SERP1344	-	Tn554, streptomycin 3''-adenylyltransferase
1317	 29.89	0	1401479..1401856	-	125	57867250	tnpC-2	SERP1345	-	Tn554, transposase C
1318	 33.86	0	1401863..1403755	-	630	57867259	tnpB-2	SERP1346	-	Tn554, transposase B
1319	 32.14	0	1403752..1404837	-	361	57867260	tnpA-2	SERP1347	-	Tn554, transposase A
1320	 31.49	0	1405027..1405623	+	198	57867261	-	SERP1348	-	ISSep1-like transposase
1321	 33.93	0	1406293..1407129	-	278	57867262	-	SERP1350	-	aldo/keto reductase family oxidoreductase
1322	 30.69	0	1407309..1408217	-	302	57867263	-	SERP1351	-	hypothetical protein
1323	 36.08	+1	1408320..1409519	-	399	57867271	metK	SERP1352	-	S-adenosylmethionine synthetase
1324	 33.46	0	1409889..1411481	+	530	57867272	pckA	SERP1353	-	phosphoenolpyruvate carboxykinase
1325	 32.57	0	1411712..1412497	-	261	57867273	-	SERP1354	-	hypothetical protein
1326	 33.33	0	1412484..1412960	-	158	57867274	-	SERP1355	-	MutT/nudix family protein
1327	 33.73	0	1413022..1413270	+	82	57867275	-	SERP1356	-	hypothetical protein
1328	 31.54	0	1413267..1414268	-	333	57867276	-	SERP1357	-	O-succinylbenzoic acid synthetase, putative
1329	 32.42	0	1414258..1415682	-	474	57867277	menE	SERP1358	-	O-succinylbenzoic acid--CoA ligase
1330	 29.25	0	1416692..1416838	+	48	57867285	-	SERP1359	-	hypothetical protein
1331	 31.23	0	1416933..1417598	+	221	57867286	-	SERP1360	-	surface lipoprotein-related protein
1332	 26.04	-1	1417760..1418047	+	95	57867287	-	SERP1361	-	hypothetical protein
1333	 29.52	0	1418574..1419308	+	244	57867288	-	SERP1362	-	hypothetical protein
1334	 32.79	0	1421818..1422372	-	184	57867289	-	SERP1365	-	hypothetical protein
1335	 33.68	0	1422508..1423956	-	482	57867290	hemG	SERP1366	-	protoporphyrinogen oxidase
1336	 34.20	0	1424049..1424972	-	307	57867298	hemH	SERP1367	-	ferrochelatase
1337	 35.07	0	1425049..1426083	-	344	57867299	hemE	SERP1368	-	uroporphyrinogen decarboxylase
1338	 30.56	0	1426403..1426906	+	167	57867300	-	SERP1369	-	RNAIII-activating protein TRAP
1339	 29.29	0	1427468..1428085	-	205	57867301	-	SERP1370	-	cadmium resistance family protein
1340	 28.51	0	1428144..1429367	-	407	57867302	-	SERP1371	-	ABC transporter, permease protein
1341	 30.09	0	1429360..1430100	-	246	57867303	-	SERP1372	-	ABC transporter, ATP-binding protein
1342	 30.05	0	1430230..1430655	+	141	57867304	-	SERP1373	-	HIT family protein
1343	 32.26	0	1430732..1431103	+	123	57867305	-	SERP1374	-	hypothetical protein
1344	 26.38	-1	1431269..1431829	+	186	57867314	-	SERP1375	-	hypothetical protein
1345	 28.32	-1	1432032..1433009	+	325	57867315	-	SERP1376	-	protein export protein PrsA, putative
1346	 36.19	+1	1433159..1433263	-	34	57867316	-	SERP1377	-	hypothetical protein
1347	 33.55	0	1433435..1434376	-	313	57867317	cbf1	SERP1378	-	3'-5' exoribonuclease YhaM
1348	 29.25	0	1434373..1437312	-	979	57867318	-	SERP1379	-	hypothetical protein
1349	 30.99	0	1437302..1438498	-	398	57867319	-	SERP1380	-	DNA repair exonuclease family protein
1350	 28.99	0	1438769..1439113	-	114	57867320	-	SERP1381	-	hypothetical protein
1351	 27.14	-1	1439186..1440316	-	376	57867321	-	SERP1382	-	hypothetical protein
1352	 31.83	0	1440498..1440962	-	154	57867330	-	SERP1383	-	Cro/CI family transcriptional regulator
1353	 31.73	0	1441233..1441856	-	207	57867331	-	SERP1384	-	LuxR family DNA-binding response regulator
1354	 31.39	0	1441849..1442982	-	377	57867267	-	SERP1385	-	sensor histidine kinase
1355	 31.88	0	1443141..1443965	+	274	57867268	-	SERP1386	-	ribosomal large subunit pseudouridine synthase D
1356	 34.42	0	1444326..1445711	-	461	57867269	fumC	SERP1387	-	fumarate hydratase
1357	 30.86	0	1445896..1446300	-	134	57867270	-	SERP1388	-	hypothetical protein
1358	 27.78	-1	1446456..1446635	-	59	57867278	-	SERP1389	-	hypothetical protein
1359	 32.83	0	1446659..1447258	-	199	57867279	-	SERP1390	-	glucosamine-6-phosphate isomerase family protein
1360	 32.27	0	1447416..1447886	-	156	57867280	-	SERP1391	-	RNA methyltransferase
1361	 35.01	0	1447883..1449013	-	376	57867281	-	SERP1392	-	iron-sulfur cluster-binding protein, putative
1362	 33.33	0	1449223..1449378	-	51	57867282	-	SERP1393	-	truncated IS1272 transposase
1363	 31.40	0	1449875..1450597	-	240	57867283	-	SERP1394	-	amino acid ABC transporter, ATP-binding protein, putative
1364	 31.00	0	1450590..1452047	-	485	57867284	-	SERP1395	-	amino acid ABC transporter, permease/amino acid-binding protein, putative
1365	 31.16	0	1452286..1453344	-	352	57867291	-	SERP1396	-	PTS system, IIC component, putative
1366	 31.68	0	1453570..1454418	-	282	57867292	sspA	SERP1397	-	glutamyl endopeptidase precursor SspA
1367	 32.23	0	1462924..1463376	-	150	57867293	-	SERP1398	-	FUR family transcriptional regulator
1368	 27.97	-1	1463472..1464422	-	316	57867294	-	SERP1399	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1369	 28.32	-1	1464425..1464883	-	152	57867295	bcp	SERP1400	-	bacterioferritin comigratory protein
1370	 37.36	+1	1464964..1466253	+	429	57867296	hemL-2	SERP1401	-	glutamate-1-semialdehyde aminotransferase
1371	 31.14	0	1466560..1467654	+	364	57867297	-	SERP1402	-	hypothetical protein
1372	 32.24	0	1467814..1469550	-	578	57867306	-	SERP1403	-	ABC transporter, permease/ATP-binding protein
1373	 28.83	0	1469571..1469681	+	36	57867307	-	SERP1404	-	hypothetical protein
1374	 30.76	0	1469792..1470334	-	180	57867308	-	SERP1405	-	hypothetical protein
1375	 33.91	0	1470441..1471484	-	347	57867309	mutY	SERP1406	-	A/G-specific adenine glycosylase
1376	 32.41	0	1471665..1472639	+	324	57867310	-	SERP1407	-	hypothetical protein
1377	 27.32	-1	1472825..1473655	-	276	57867311	-	SERP1408	-	hypothetical protein
1378	 30.63	0	1473664..1475181	-	505	57867312	-	SERP1409	-	ABC transporter, ATP-binding protein
1379	 32.30	0	1475197..1475487	-	96	57867313	-	SERP1410	-	hypothetical protein
1380	 28.98	0	1475504..1476307	-	267	57867322	recX	SERP1411	-	recombination regulator RecX
1381	 29.01	0	1476585..1477394	-	269	57867323	-	SERP1412	-	glycosyltransferase
1382	 34.87	0	1477715..1478233	-	172	57867324	-	SERP1413	-	ThiJ/PfpI family protein
1383	 31.48	0	1478533..1478694	-	53	57867325	-	SERP1414	-	hypothetical protein
1384	 32.46	0	1478853..1479995	+	380	57867326	-	SERP1415	-	radical SAM domain-containing protein
1385	 35.40	0	1480132..1480662	-	176	57867327	-	SERP1416	-	cytosolic long-chain acyl-CoA thioester hydrolase family protein
1386	 34.30	0	1480742..1481983	-	413	57867328	-	SERP1417	-	aminopeptidase family protein
1387	 30.09	0	1481985..1482200	-	71	57867329	-	SERP1418	-	hypothetical protein
1388	 34.41	0	1482341..1482805	+	154	57867337	-	SERP1419	-	phosphotyrosine protein phosphatase
1389	 32.28	0	1482813..1483097	+	94	57867338	-	SERP1420	-	hypothetical protein
1390	 31.38	0	1483504..1484682	+	392	57867339	-	SERP1421	-	ribonuclease BN, putative
1391	 33.97	0	1484739..1485368	-	209	57867340	vraR	SERP1422	-	DNA-binding response regulator VraR
1392	 29.51	0	1485358..1486404	-	348	57867341	vraS	SERP1423	-	sensor histidine kinase VraS
1393	 29.20	0	1486401..1487102	-	233	57867342	-	SERP1424	-	hypothetical protein
1394	 24.24	-2	1487117..1487512	-	131	57867343	-	SERP1425	-	hypothetical protein
1395	 35.71	0	1487661..1488416	-	251	57867344	map	SERP1426	-	methionine aminopeptidase
1396	 30.70	0	1488590..1489576	+	328	57867353	-	SERP1427	-	hypothetical protein
1397	 33.33	0	1489727..1490263	-	178	57867354	-	SERP1428	-	immunodominant antigen B, putative
1398	 33.06	0	1490704..1491429	-	241	57867355	-	SERP1429	-	cobyric acid synthase, putative
1399	 33.41	0	1491431..1492744	-	437	57867356	-	SERP1430	-	Mur ligase family protein
1400	 31.74	0	1492966..1493466	+	166	57867357	-	SERP1431	-	ferritin family protein
1401	 32.79	0	1493655..1494209	+	184	57867358	-	SERP1432	-	exonuclease
1402	 32.87	0	1494240..1495310	-	356	57867359	dinP	SERP1433	-	DNA-damage-inducible protein P
1403	 28.91	0	1495620..1496162	-	180	57867360	-	SERP1434	-	hypothetical protein
32.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.