IslandPathversion 1.0

IslandPath Analysis: Staphylococcus epidermidis RP62A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.10 STD DEV: 3.66
Staphylococcus epidermidis RP62A, complete genome - 1..2616530
2494 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1226	 31.04	0	1289659..1290531	-	290	57867171	fpg	SERP1253	-	formamidopyrimidine-DNA glycosylase
1227	 31.32	0	1290547..1293177	-	876	57867172	polA	SERP1254	-	DNA polymerase I
1228	 27.62	-1	1293472..1295169	-	565	57867173	phoR	SERP1255	-	sensory box histidine kinase PhoR
1229	 32.63	0	1295169..1295879	-	236	57867182	phoP	SERP1256	-	alkaline phosphatase synthesis transcriptional regulatory protein PhoP
1230	 34.75	0	1296195..1297463	-	422	57867183	icd	SERP1257	-	isocitrate dehydrogenase
1231	 34.05	0	1297506..1298627	-	373	57867184	gltA	SERP1258	-	methylcitrate synthase
1232	 36.57	+1	1298756..1299928	-	390	57867185	-	SERP1259	-	IS256-like transposase
1233	 34.07	0	1300307..1301665	+	452	57867186	-	SERP1260	-	amino acid permease family protein
1234	 34.19	0	1302046..1303803	-	585	57867187	pyk	SERP1261	-	pyruvate kinase
1235	 37.77	+1	1303827..1304795	-	322	57867188	pfkA	SERP1262	-	6-phosphofructokinase
1236	 34.18	0	1304973..1305917	-	314	57867189	accA	SERP1263	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1237	 32.52	0	1305917..1306774	-	285	57867206	accD	SERP1264	-	acetyl-CoA carboxylase subunit beta
1238	 35.04	0	1306873..1308102	-	409	57867207	-	SERP1265	-	NADP-dependent malic enzyme, putative
1239	 31.61	0	1308406..1311603	-	1065	57867208	dnaE	SERP1266	-	DNA polymerase III, alpha subunit
1240	 32.16	0	1311627..1312565	-	312	57867209	-	SERP1267	-	DHH family protein
1241	 31.02	0	1312599..1313897	-	432	57867210	-	SERP1268	-	CBS domain-containing protein
1242	 33.33	0	1314095..1314508	+	137	57867211	-	SERP1269	-	universal stress protein
1243	 35.94	+1	1314809..1315498	-	229	57867212	-	SERP1270	-	hypothetical protein
1244	 33.05	0	1315670..1316725	+	351	57867213	pepQ	SERP1271	-	proline dipeptidase
1245	 35.84	+1	1316789..1317904	-	371	57867221	ald	SERP1272	-	alanine dehydrogenase
1246	 36.93	+1	1318052..1318552	+	166	57867222	-	SERP1273	-	universal stress protein
1247	 34.85	0	1319186..1320439	-	417	57867223	ackA	SERP1275	-	acetate kinase
1248	 33.44	0	1320528..1321475	-	315	57867224	-	SERP1276	-	hypothetical protein
1249	 31.11	0	1321604..1322098	-	164	57867225	-	SERP1277	-	thiol peroxidase, putative
1250	 32.42	0	1322341..1323105	-	254	57867226	-	SERP1278	-	hypothetical protein
1251	 32.11	0	1323145..1324368	-	407	57867227	thiI	SERP1279	-	thiamine biosynthesis protein ThiI
1252	 31.58	0	1324368..1325507	-	379	57867237	-	SERP1280	-	aminotransferase, class V
1253	 29.73	0	1325837..1327531	-	564	57867238	-	SERP1281	-	septation ring formation regulator EzrA
1254	 33.55	0	1327666..1328136	+	156	57867239	-	SERP1282	-	GAF domain-containing protein
1255	 35.90	+1	1328209..1328325	-	38	57867240	-	SERP1283	-	hypothetical protein
1256	 36.32	+1	1328357..1328959	+	200	57867241	rpsD	SERP1284	-	30S ribosomal protein S4
1257	 28.25	-1	1329229..1329975	-	248	57867242	-	SERP1285	-	glycerophosphoryl diester phosphodiesterase, putative
1258	 31.97	0	1330053..1330493	+	146	57867243	-	SERP1286	-	OsmC/Ohr family protein
1259	 33.93	0	1330620..1331783	+	387	57867244	-	SERP1287	-	aminotransferase, class V
1260	 34.46	0	1331773..1333368	+	531	57867245	serA	SERP1288	-	D-3-phosphoglycerate dehydrogenase
1261	 29.60	0	1333448..1334572	-	374	57867251	-	SERP1289	-	HAD superfamily hydrolase
1262	 34.08	0	1334668..1336140	-	490	57867252	-	SERP1290	-	PTS system, IIBC components
1263	 31.57	0	1336350..1336973	-	207	57867253	-	SERP1291	-	1-acyl-sn-glycerol-3-phosphate acyltransferase, putative
1264	 34.14	0	1337253..1338491	+	412	57867254	-	SERP1292	-	serine protease HtrA, putative
1265	 33.49	0	1338682..1339947	-	421	57867255	tyrS	SERP1293	-	tyrosyl-tRNA synthetase
1266	 31.68	0	1340351..1341256	+	301	57867256	-	SERP1294	-	transglycosylase domain-containing protein
1267	 36.15	+1	1341346..1343013	-	555	57867257	fhs	SERP1295	-	formate--tetrahydrofolate ligase
1268	 32.83	0	1343433..1344422	-	329	57867258	ccpA	SERP1296	-	catabolite control protein A
1269	 33.15	0	1344678..1345769	-	363	57867264	-	SERP1297	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
1270	 34.15	0	1346204..1347427	-	407	57867265	-	SERP1298	-	hypothetical protein
1271	 33.94	0	1347505..1347996	-	163	57867266	-	SERP1299	-	hypothetical protein
1272	 32.27	0	1348071..1349384	-	437	57867174	murC	SERP1300	-	UDP-N-acetylmuramate--L-alanine ligase
1273	 31.62	0	1349405..1352914	-	1169	57867175	-	SERP1301	-	FtsK/SpoIIIE family protein
1274	 32.66	0	1352935..1353531	-	198	57867176	-	SERP1302	-	hypothetical protein
1275	 31.11	0	1353554..1354408	-	284	57867177	-	SERP1303	-	hypothetical protein
1276	 27.56	-1	1354546..1354857	-	103	57867178	-	SERP1304	-	thioredoxin, putative
1277	 34.62	0	1354863..1355948	-	361	57867179	pepA	SERP1305	-	glutamyl-aminopeptidase
1278	 25.71	-1	1356033..1356347	+	104	57867180	-	SERP1306	-	hypothetical protein
1279	 31.17	0	1356510..1357157	-	215	57867181	trmB	SERP1307	-	tRNA (guanine-N(7)-)-methyltransferase
1280	 35.48	0	1357171..1357962	-	263	57867190	-	SERP1308	-	hypothetical protein
1281	 32.63	0	1358349..1359197	-	282	57867191	dat	SERP1309	-	D-alanine aminotransferase
1282	 34.68	0	1359201..1360610	-	469	57867192	-	SERP1310	-	dipeptidase PepV
1283	 28.67	0	1360918..1361346	-	142	57867193	-	SERP1311	-	hypothetical protein
1284	 30.16	0	1361364..1362056	-	230	57867194	-	SERP1312	-	pseudouridine synthase family 1 protein
1285	 32.19	0	1362053..1363714	-	553	57867195	-	SERP1313	-	polysaccharide biosynthesis protein
1286	 22.22	-2	1363803..1363901	-	32	57867196	-	SERP1314	-	hypothetical protein
1287	 32.30	0	1363987..1365249	+	420	57867197	-	SERP1315	-	hypothetical protein
1288	 31.76	0	1365621..1376699	-	3692	57867198	-	SERP1316	-	cell wall surface anchor family protein
1289	 33.65	0	1377104..1377415	-	103	57867199	-	SERP1317	-	rhodanese-like domain-containing protein
1290	 34.74	0	1377441..1379855	-	804	57867200	leuS	SERP1318	-	leucyl-tRNA synthetase
1291	 32.67	0	1380147..1381361	-	404	57867201	-	SERP1319	-	drug transporter, putative
1292	 36.69	+1	1381468..1382421	+	317	57867202	-	SERP1320	-	hypothetical protein
1293	 29.43	0	1382418..1382981	+	187	57867203	-	SERP1321	-	hypothetical protein
1294	 26.03	-1	1383215..1383625	-	136	57867204	rot	SERP1322	-	repressor of toxins
1295	 30.19	0	1384106..1384933	-	275	57867205	-	SERP1323	-	lysophospholipase, putative
1296	 30.24	0	1385177..1386178	+	333	57867214	putA	SERP1324	-	proline dehydrogenase
1297	 33.98	0	1386436..1386897	-	153	57867215	ribH	SERP1325	-	riboflavin synthase, beta subunit
1298	 34.94	0	1386910..1388091	-	393	57867216	ribBA	SERP1326	-	3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
1299	 33.18	0	1388104..1388736	-	210	57867217	ribE	SERP1327	-	riboflavin synthase subunit alpha
1300	 33.91	0	1388743..1389786	-	347	57867218	ribD	SERP1328	-	riboflavin biosynthesis protein RibD
1301	 30.91	0	1390222..1391706	-	494	57867219	-	SERP1329	-	hypothetical protein
1302	 31.57	0	1392054..1392905	-	283	57867220	-	SERP1330	-	N-acetylmuramoyl-L-alanine amidase
1303	 27.78	-1	1393283..1393498	-	71	57867228	-	SERP1331	-	hypothetical protein
1304	 25.83	-1	1393531..1393650	+	39	57867229	-	SERP1332	-	hypothetical protein
1305	 27.08	-1	1393706..1394185	+	159	57867230	-	SERP1333	-	hypothetical protein
1306	 27.93	-1	1394191..1394634	+	147	57867231	-	SERP1334	-	hypothetical protein
1307	 27.70	-1	1394621..1395064	-	147	57867232	-	SERP1335	-	hypothetical protein
1308	 35.43	0	1395204..1395917	-	237	57867233	tal	SERP1336	-	putative translaldolase
1309	 22.65	-2	1396194..1396502	+	102	57867234	-	SERP1337	-	hypothetical protein
1310	 33.06	0	1396539..1396904	+	121	57867235	-	SERP1338	-	CrcB family protein
1311	 33.33	0	1396901..1397254	+	117	57867236	-	SERP1339	-	CrcB family protein
1312	 32.70	0	1397898..1398374	+	158	57867246	-	SERP1340	-	ISSep1-like transposase
1313	 34.39	0	1398493..1399155	-	220	57867247	-	SERP1341	-	Tn554 hypothetical protein
1314	 21.67	-2	1399547..1399606	+	19	57867845	-	SERP1342	-	Tn554, peptide L
1315	 32.51	0	1399689..1400420	+	243	57867248	ermA-2	SERP1343	-	Tn554, rRNA adenine N-6-methyltransferase
1316	 36.40	+1	1400546..1401328	-	260	57867249	spc-2	SERP1344	-	Tn554, streptomycin 3''-adenylyltransferase
1317	 29.89	0	1401479..1401856	-	125	57867250	tnpC-2	SERP1345	-	Tn554, transposase C
1318	 33.86	0	1401863..1403755	-	630	57867259	tnpB-2	SERP1346	-	Tn554, transposase B
1319	 32.14	0	1403752..1404837	-	361	57867260	tnpA-2	SERP1347	-	Tn554, transposase A
1320	 31.49	0	1405027..1405623	+	198	57867261	-	SERP1348	-	ISSep1-like transposase
1321	 33.93	0	1406293..1407129	-	278	57867262	-	SERP1350	-	aldo/keto reductase family oxidoreductase
1322	 30.69	0	1407309..1408217	-	302	57867263	-	SERP1351	-	hypothetical protein
1323	 36.08	+1	1408320..1409519	-	399	57867271	metK	SERP1352	-	S-adenosylmethionine synthetase
1324	 33.46	0	1409889..1411481	+	530	57867272	pckA	SERP1353	-	phosphoenolpyruvate carboxykinase
1325	 32.57	0	1411712..1412497	-	261	57867273	-	SERP1354	-	hypothetical protein
32.10	MEAN

3.66	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.