IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
948	 32.16	0	1019791..1020981	-	396	161509214	-	USA300HOU_0974	-	major facilitator transporter
949	 32.65	0	1020959..1022134	-	391	161509215	-	USA300HOU_0975	-	diacylglycerol glucosyltransferase
950	 36.84	+1	1022567..1024048	+	493	161509216	murE1	USA300HOU_0976	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
951	 29.76	0	1024041..1024292	+	83	161509217	-	USA300HOU_0977	-	hypothetical protein
952	 34.04	0	1024292..1025854	+	520	161509218	prfC	USA300HOU_0978	-	peptide chain release factor 3
953	 36.82	+1	1026156..1026959	+	267	161509219	-	USA300HOU_0979	-	hypothetical protein
954	 31.39	0	1027193..1029502	+	769	161509220	-	USA300HOU_0980	-	peptidase
955	 31.86	0	1029519..1030877	+	452	161509221	-	USA300HOU_0981	-	Trk family K+ transporter membrane protein
956	 32.14	0	1031016..1032527	+	503	161509222	-	USA300HOU_0982	-	5'-nucleotidase
957	 30.18	0	1033014..1033583	-	189	161509223	-	USA300HOU_0983	-	competence protein
958	 27.06	-1	1041289..1042770	+	493	161509224	-	USA300HOU_0984	-	glycosyltransferase
959	 33.96	0	1043692..1044651	+	319	161509225	-	USA300HOU_0985	-	iron (Fe3+) ABC transporter binding protein
960	 28.79	-1	1044697..1044828	-	43	161509226	-	USA300HOU_0986	-	hypothetical protein
961	 26.85	-1	1044892..1045107	-	71	161509227	-	USA300HOU_0987	-	hypothetical protein
962	 32.07	0	1045272..1045823	+	183	161509228	-	USA300HOU_0988	-	hypothetical protein
963	 34.93	0	1045875..1046813	-	312	161509229	menA	USA300HOU_0989	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
964	 32.24	0	1046986..1048356	+	456	161509230	menF	USA300HOU_0990	-	isochorismate synthase
965	 33.99	0	1048343..1050016	+	557	161509231	menD	USA300HOU_0991	-	2-oxoglutarate decarboxylase
966	 32.71	0	1050003..1050806	+	267	161509232	-	USA300HOU_0992	-	peptidase
967	 38.69	+1	1050799..1051620	+	273	161509233	menB	USA300HOU_0993	-	naphthoate synthase
968	 30.91	0	1051859..1052188	-	109	161509234	sspC	USA300HOU_0994	-	I57 family staphostatin B
969	 30.63	0	1052226..1053407	-	393	161509235	sspB	USA300HOU_0995	-	C47 family staphopain B
970	 36.89	+1	1053489..1054499	-	336	161509236	sspA	USA300HOU_0996	-	glutamyl endopeptidase
971	 35.00	0	1058166..1061936	-	1256	161509237	-	USA300HOU_0997	-	bifunctional N-acetylmuramoyl-L-alanine amidase/mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
972	 34.67	0	1062164..1062613	-	149	161509238	-	USA300HOU_0998	-	acetyltransferase
973	 30.79	0	1062753..1063223	-	156	161509239	-	USA300HOU_0999	-	hypothetical protein
974	 32.51	0	1063271..1064488	-	405	161509240	-	USA300HOU_1000	-	hypothetical protein
975	 28.31	-1	1064939..1066132	+	397	161509241	fmt1	USA300HOU_1001	-	carboxypeptidase
976	 35.40	0	1066669..1066959	-	96	161509242	qoxD	USA300HOU_1002	-	cytochrome c oxidase subunit IV
977	 35.97	0	1066956..1067561	-	201	161509243	qoxC	USA300HOU_1003	-	quinol oxidase subunit III
978	 36.90	+1	1067551..1069539	-	662	161509244	qoxB	USA300HOU_1004	-	quinol oxidase subunit I
979	 34.24	0	1069539..1070639	-	366	161509245	qoxA	USA300HOU_1005	-	quinol oxidase subunit II
980	 25.20	-1	1070941..1071063	+	40	161509246	-	USA300HOU_1006	-	hypothetical protein
981	 32.39	0	1071211..1071528	-	105	161509247	-	USA300HOU_1007	-	hypothetical protein
982	 34.38	0	1072333..1073193	-	286	161509248	folD	USA300HOU_1008	-	bifunctional methylenetetrahydrofolate dehydrogenase (NADP(+))/methenyltetrahydrofolate cyclohydrolase
983	 38.30	+1	1073394..1073876	+	160	161509249	purE	USA300HOU_1009	-	5-(carboxyamino)imidazole ribonucleotide mutase
984	 32.62	0	1073863..1074987	+	374	161509250	purK	USA300HOU_1010	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
985	 28.94	0	1074991..1075695	+	234	161509251	purC	USA300HOU_1011	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
986	 32.58	0	1075695..1075958	+	87	161509252	purS	USA300HOU_1012	-	phosphoribosylformylglycinamidine synthase
987	 34.82	0	1075960..1076631	+	223	161509253	purQ	USA300HOU_1013	-	phosphoribosylformylglycinamidine synthase I
988	 35.16	0	1076624..1078813	+	729	161509254	purL	USA300HOU_1014	-	phosphoribosylformylglycinamidine synthase II
989	 35.96	0	1078792..1080276	+	494	161509255	purF	USA300HOU_1015	-	amidophosphoribosyltransferase
990	 35.57	0	1080269..1081297	+	342	161509256	purM	USA300HOU_1016	-	phosphoribosylaminoimidazole synthetase
991	 34.61	0	1081872..1083359	+	495	161509257	purH	USA300HOU_1017	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
992	 35.66	0	1083381..1084628	+	415	161509258	purD	USA300HOU_1018	-	phosphoribosylamine--glycine ligase
993	 31.10	0	1084893..1085699	-	268	161509259	-	USA300HOU_1019	-	ABC transporter ATP-binding protein
994	 33.26	0	1085692..1087092	-	466	161509260	-	USA300HOU_1020	-	ABC transporter ATP-binding protein
995	 37.15	+1	1087107..1087682	-	191	161509261	-	USA300HOU_1021	-	hypothetical protein
996	 28.94	0	1088552..1089847	+	431	161509262	-	USA300HOU_1022	-	hypothetical protein
997	 31.46	0	1090272..1091444	+	390	161509263	-	USA300HOU_1023	-	hypothetical protein
998	 30.57	0	1091498..1092040	+	180	161509264	-	USA300HOU_1024	-	hypothetical protein
999	 34.83	0	1092194..1092460	+	88	161509265	ptsH	USA300HOU_1025	-	phosphocarrier protein HPr
1000	 35.31	0	1092463..1094181	+	572	161509266	ptsI	USA300HOU_1026	-	PTS family phosphoenolpyruvate (PEP) porter component I
1001	 29.06	0	1094418..1094651	-	77	161509267	-	USA300HOU_1027	-	glutaredoxin
1002	 33.99	0	1094849..1096210	+	453	161509268	cydA	USA300HOU_1028	-	cytochrome d ubiquinol oxidase subunit I
1003	 30.39	0	1096207..1097226	+	339	161509269	cydB	USA300HOU_1029	-	cytochrome d ubiquinol oxidase subunit II
1004	 35.14	0	1097359..1098021	+	220	161509270	-	USA300HOU_1030	-	Trk family K+ transporter NAD+ binding protein
1005	 33.75	0	1098370..1100067	-	565	161509271	-	USA300HOU_1031	-	hypothetical protein
1006	 31.51	0	1100067..1100285	-	72	161509272	-	USA300HOU_1032	-	hypothetical protein
1007	 26.83	-1	1100314..1100436	-	40	161509273	-	USA300HOU_1033	-	hypothetical protein
1008	 35.14	0	1100766..1101317	-	183	161509274	pdf1	USA300HOU_1034	-	peptide deformylase
1009	 28.87	-1	1101682..1102308	+	208	161509275	-	USA300HOU_1035	-	hypothetical protein
1010	 37.29	+1	1102479..1103591	+	370	161509276	pdhA	USA300HOU_1036	-	pyruvate dehydrogenase (acetyl-transferring) alpha subunit
1011	 38.45	+1	1103595..1104572	+	325	161509277	phdB	USA300HOU_1037	-	pyruvate dehydrogenase (acetyl-transferring) beta subunit
1012	 37.90	+1	1104663..1105955	+	430	161509278	pdhC	USA300HOU_1038	-	branched-chain alpha-keto acid dehydrogenase subunit E2
1013	 36.96	+1	1105959..1107365	+	468	161509279	pdhD	USA300HOU_1039	-	dihydrolipoamide dehydrogenase
1014	 32.25	0	1107533..1107808	+	91	161509280	-	USA300HOU_1040	-	hypothetical protein
1015	 29.81	0	1107952..1108491	+	179	161509281	-	USA300HOU_1041	-	transcriptional regulator
1016	 31.14	0	1108504..1109598	+	364	161509282	potA	USA300HOU_1042	-	spermidine/putrescine ABC transporter ATP-binding protein
1017	 31.56	0	1111203..1112276	+	357	161509283	potD	USA300HOU_1043	-	spermidine/putrescine ABC transporter ATP-binding protein
1018	 31.67	0	1112350..1113369	+	339	161509284	-	USA300HOU_1044	-	hypothetical protein
1019	 29.29	0	1113652..1114071	+	139	161509285	-	USA300HOU_1045	-	hypothetical protein
1020	 20.95	-2	1114110..1114214	+	34	161509286	-	USA300HOU_1046	-	hypothetical protein
1021	 35.17	0	1117734..1119581	+	615	161509287	-	USA300HOU_1047	-	GTP-binding protein TypA
1022	 36.90	+1	1119721..1119888	-	55	161509288	-	USA300HOU_1048	-	hypothetical protein
1023	 31.88	0	1119890..1120372	-	160	161509289	-	USA300HOU_1049	-	hypothetical protein
1024	 31.52	0	1120513..1120788	+	91	161509290	-	USA300HOU_1050	-	hypothetical protein
1025	 31.23	0	1121090..1122328	+	412	161509291	-	USA300HOU_1051	-	FtsW/RodA/SpoVE family cell division protein
1026	 35.42	0	1122882..1126334	+	1150	161509292	pycA	USA300HOU_1052	-	pyruvate carboxylase
1027	 33.52	0	1126474..1127544	-	356	161509293	ctaA	USA300HOU_1053	-	cytochrome oxidase assembly protein
1028	 32.24	0	1127825..1128736	+	303	161509294	ctaB	USA300HOU_1054	-	protoheme IX farnesyltransferase
1029	 32.47	0	1128761..1129222	+	153	161509295	-	USA300HOU_1055	-	hypothetical protein
1030	 30.15	0	1129549..1130586	+	345	161509296	-	USA300HOU_1056	-	hypothetical protein
1031	 34.71	0	1130602..1131036	+	144	161509297	-	USA300HOU_1058	-	hypothetical protein
1032	 27.06	-1	1132264..1132518	+	84	161509298	-	USA300HOU_1059	-	hypothetical protein
1033	 29.74	0	1132521..1132910	-	129	161509299	-	USA300HOU_1060	-	hypothetical protein
1034	 31.49	0	1132980..1133522	+	180	161509300	-	USA300HOU_1061	-	site-specific DNA-methyltransferase (adenine-specific)
1035	 30.85	0	1133524..1134006	+	160	161509301	coaD	USA300HOU_1062	-	pantetheine-phosphate adenylyltransferase
1036	 32.19	0	1134068..1135207	-	379	161509302	-	USA300HOU_1063	-	hypothetical protein
1037	 33.52	0	1138438..1139490	-	350	161509303	isdA	USA300HOU_1064	-	iron (Fe2+)-regulated surface determinant protein IsdA
1038	 32.02	0	1139699..1140382	+	227	161509304	isdC	USA300HOU_1065	-	iron (Fe2+)-regulated surface determinant protein IsdC
1039	 28.60	-1	1140382..1141458	+	358	161509305	-	USA300HOU_1066	-	hypothetical protein
1040	 30.94	0	1141455..1142333	+	292	161509306	isdE	USA300HOU_1067	-	iron (Fe+3) ABC transporter binding protein
1041	 32.71	0	1142346..1143311	+	321	161509307	isdF	USA300HOU_1068	-	iron (Fe3+) ABC transporter membrane protein
1042	 30.56	0	1144126..1144449	+	107	161509308	isdG2	USA300HOU_1069	-	heme-degrading monooxygenase IsdG
1043	 31.48	0	1144486..1144593	+	35	161509309	-	USA300HOU_1070	-	hypothetical protein
1044	 23.23	-2	1144638..1144736	+	32	161509310	-	USA300HOU_1071	-	hypothetical protein
1045	 35.22	0	1144833..1145573	+	246	161509311	spoU/trmH	USA300HOU_1072	-	TrmH family rRNA methyltransferase
1046	 34.56	0	1145954..1147012	+	352	161509312	pheS	USA300HOU_1073	-	phenylalanyl-tRNA synthetase subunit alpha
1047	 34.83	0	1147012..1149414	+	800	161509313	pheT1	USA300HOU_1074	-	phenylalanine--tRNA ligase beta subunit
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.