IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
908	 33.79	0	976721..979330	+	869	161509174	clpB	USA300HOU_0933	-	endopeptidase ClpB
909	 27.24	-1	979389..980258	-	289	161509175	-	USA300HOU_0934	-	LysR family transcriptional regulator
910	 26.79	-1	980368..981513	+	381	161509176	leuA1	USA300HOU_0935	-	2-isopropylmalate synthase
911	 25.55	-1	981497..982138	+	213	161509177	-	USA300HOU_0936	-	hypothetical protein
912	 26.00	-1	982129..982278	-	49	161509178	-	USA300HOU_0937	-	hypothetical protein
913	 23.68	-2	982131..983249	+	372	161509179	-	USA300HOU_0938	-	hypothetical protein
914	 33.10	0	984059..984493	+	144	161509180	eap	USA300HOU_0939	-	extracellular adherence protein Eap
915	 34.41	0	984750..984935	-	61	161509181	-	USA300HOU_0940	-	hypothetical protein
916	 35.46	0	985230..986171	+	313	161509182	fabH1	USA300HOU_0941	-	3-oxoacyl-(acyl carrier protein) synthase III
917	 38.71	+1	986183..987427	+	414	161509183	fabH2	USA300HOU_0942	-	3-oxoacyl-[acyl-carrier-protein] synthase
918	 26.88	-1	987482..987853	-	123	161509184	-	USA300HOU_0943	-	hypothetical protein
919	 32.69	0	988096..989022	+	308	161509185	oppB1	USA300HOU_0944	-	oligopeptide ABC transporter membrane protein
920	 33.80	0	989022..990092	+	356	161509186	oppC1	USA300HOU_0945	-	oligopeptide ABC transporter membrane protein
921	 35.73	0	990109..991191	+	360	161509187	oppD1	USA300HOU_0946	-	oligopeptide ABC transporter ATP-binding protein
922	 33.12	0	991181..992122	+	313	161509188	oppF1	USA300HOU_0947	-	oligopeptide ABC transporter ATP-binding protein
923	 32.79	0	992141..993796	+	551	161509189	oppA1	USA300HOU_0948	-	oligopeptide ABC transporter substrate-binding protein
924	 32.52	0	994008..995723	+	571	161509190	oppA2	USA300HOU_0949	-	oligopeptide ABC transporter substrate-binding protein
925	 29.99	0	995774..996760	+	328	161509191	oppD2	USA300HOU_0950	-	oligopeptide ABC transporter ATP-binding protein
926	 30.89	0	996763..997743	+	326	161509192	oppD3	USA300HOU_0951	-	oligopeptide ABC transporter ATP-binding protein
927	 28.76	-1	997736..998698	+	320	161509193	oppB3	USA300HOU_0952	-	oligopeptide ABC transporter membrane protein
928	 31.29	0	998710..999591	+	293	161509194	oppC3	USA300HOU_0953	-	oligopeptide ABC transporter membrane protein
929	 34.65	0	999633..1000622	-	329	161509195	trpS	USA300HOU_0954	-	tryptophanyl-tRNA synthetase
930	 32.58	0	1000917..1001312	+	131	161509196	-	USA300HOU_0955	-	transcriptional regulator Spx
931	 31.67	0	1001683..1002402	+	239	161509197	mecA2	USA300HOU_0956	-	adaptor protein
932	 32.12	0	1003556..1005364	+	602	161509198	-	USA300HOU_0958	-	M03 family oligopeptidase F
933	 30.48	0	1005824..1006630	-	268	161509199	-	USA300HOU_0959	-	hypothetical protein
934	 34.70	0	1006653..1007018	-	121	161509200	-	USA300HOU_0960	-	globin
935	 29.80	0	1007122..1007715	-	197	161509201	-	USA300HOU_0961	-	hypothetical protein
936	 28.74	-1	1007901..1008248	+	115	161509202	-	USA300HOU_0962	-	hypothetical protein
937	 33.65	0	1008265..1008900	+	211	161509203	relA1	USA300HOU_0963	-	GTP pyrophosphokinase
938	 35.43	0	1008917..1009726	+	269	161509204	ppnK	USA300HOU_0964	-	inorganic polyphosphate/ATP-NAD kinase
939	 30.88	0	1009723..1010577	+	284	161509205	rluA1	USA300HOU_0965	-	pseudouridylate synthase
940	 33.33	0	1010598..1011983	+	461	161509206	mgtE	USA300HOU_0966	-	Mg2+/Co2+ transporter
941	 31.65	0	1011993..1013837	+	614	161509207	-	USA300HOU_0967	-	CPA2 family monovalent cation:proton (H+) antiporter-2
942	 21.37	-2	1013905..1014021	+	38	161509208	-	USA300HOU_0968	-	hypothetical protein
943	 35.28	0	1014115..1014885	+	256	161509209	fabI	USA300HOU_0969	-	enoyl-(acyl carrier protein) reductase
944	 31.03	0	1015080..1016165	-	361	161509210	-	USA300HOU_0970	-	hypothetical protein
945	 35.76	0	1016507..1018075	+	522	161509211	-	USA300HOU_0971	-	AGCS family alanine or glycine:sodium (Na+) or proton (H+) symporter
946	 31.49	0	1018217..1018975	+	252	161509212	-	USA300HOU_0972	-	hypothetical protein
947	 34.12	0	1019169..1019678	+	169	161509213	-	USA300HOU_0973	-	hypothetical protein
948	 32.16	0	1019791..1020981	-	396	161509214	-	USA300HOU_0974	-	major facilitator transporter
949	 32.65	0	1020959..1022134	-	391	161509215	-	USA300HOU_0975	-	diacylglycerol glucosyltransferase
950	 36.84	+1	1022567..1024048	+	493	161509216	murE1	USA300HOU_0976	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
951	 29.76	0	1024041..1024292	+	83	161509217	-	USA300HOU_0977	-	hypothetical protein
952	 34.04	0	1024292..1025854	+	520	161509218	prfC	USA300HOU_0978	-	peptide chain release factor 3
953	 36.82	+1	1026156..1026959	+	267	161509219	-	USA300HOU_0979	-	hypothetical protein
954	 31.39	0	1027193..1029502	+	769	161509220	-	USA300HOU_0980	-	peptidase
955	 31.86	0	1029519..1030877	+	452	161509221	-	USA300HOU_0981	-	Trk family K+ transporter membrane protein
956	 32.14	0	1031016..1032527	+	503	161509222	-	USA300HOU_0982	-	5'-nucleotidase
957	 30.18	0	1033014..1033583	-	189	161509223	-	USA300HOU_0983	-	competence protein
958	 27.06	-1	1041289..1042770	+	493	161509224	-	USA300HOU_0984	-	glycosyltransferase
959	 33.96	0	1043692..1044651	+	319	161509225	-	USA300HOU_0985	-	iron (Fe3+) ABC transporter binding protein
960	 28.79	-1	1044697..1044828	-	43	161509226	-	USA300HOU_0986	-	hypothetical protein
961	 26.85	-1	1044892..1045107	-	71	161509227	-	USA300HOU_0987	-	hypothetical protein
962	 32.07	0	1045272..1045823	+	183	161509228	-	USA300HOU_0988	-	hypothetical protein
963	 34.93	0	1045875..1046813	-	312	161509229	menA	USA300HOU_0989	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
964	 32.24	0	1046986..1048356	+	456	161509230	menF	USA300HOU_0990	-	isochorismate synthase
965	 33.99	0	1048343..1050016	+	557	161509231	menD	USA300HOU_0991	-	2-oxoglutarate decarboxylase
966	 32.71	0	1050003..1050806	+	267	161509232	-	USA300HOU_0992	-	peptidase
967	 38.69	+1	1050799..1051620	+	273	161509233	menB	USA300HOU_0993	-	naphthoate synthase
968	 30.91	0	1051859..1052188	-	109	161509234	sspC	USA300HOU_0994	-	I57 family staphostatin B
969	 30.63	0	1052226..1053407	-	393	161509235	sspB	USA300HOU_0995	-	C47 family staphopain B
970	 36.89	+1	1053489..1054499	-	336	161509236	sspA	USA300HOU_0996	-	glutamyl endopeptidase
971	 35.00	0	1058166..1061936	-	1256	161509237	-	USA300HOU_0997	-	bifunctional N-acetylmuramoyl-L-alanine amidase/mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
972	 34.67	0	1062164..1062613	-	149	161509238	-	USA300HOU_0998	-	acetyltransferase
973	 30.79	0	1062753..1063223	-	156	161509239	-	USA300HOU_0999	-	hypothetical protein
974	 32.51	0	1063271..1064488	-	405	161509240	-	USA300HOU_1000	-	hypothetical protein
975	 28.31	-1	1064939..1066132	+	397	161509241	fmt1	USA300HOU_1001	-	carboxypeptidase
976	 35.40	0	1066669..1066959	-	96	161509242	qoxD	USA300HOU_1002	-	cytochrome c oxidase subunit IV
977	 35.97	0	1066956..1067561	-	201	161509243	qoxC	USA300HOU_1003	-	quinol oxidase subunit III
978	 36.90	+1	1067551..1069539	-	662	161509244	qoxB	USA300HOU_1004	-	quinol oxidase subunit I
979	 34.24	0	1069539..1070639	-	366	161509245	qoxA	USA300HOU_1005	-	quinol oxidase subunit II
980	 25.20	-1	1070941..1071063	+	40	161509246	-	USA300HOU_1006	-	hypothetical protein
981	 32.39	0	1071211..1071528	-	105	161509247	-	USA300HOU_1007	-	hypothetical protein
982	 34.38	0	1072333..1073193	-	286	161509248	folD	USA300HOU_1008	-	bifunctional methylenetetrahydrofolate dehydrogenase (NADP(+))/methenyltetrahydrofolate cyclohydrolase
983	 38.30	+1	1073394..1073876	+	160	161509249	purE	USA300HOU_1009	-	5-(carboxyamino)imidazole ribonucleotide mutase
984	 32.62	0	1073863..1074987	+	374	161509250	purK	USA300HOU_1010	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
985	 28.94	0	1074991..1075695	+	234	161509251	purC	USA300HOU_1011	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
986	 32.58	0	1075695..1075958	+	87	161509252	purS	USA300HOU_1012	-	phosphoribosylformylglycinamidine synthase
987	 34.82	0	1075960..1076631	+	223	161509253	purQ	USA300HOU_1013	-	phosphoribosylformylglycinamidine synthase I
988	 35.16	0	1076624..1078813	+	729	161509254	purL	USA300HOU_1014	-	phosphoribosylformylglycinamidine synthase II
989	 35.96	0	1078792..1080276	+	494	161509255	purF	USA300HOU_1015	-	amidophosphoribosyltransferase
990	 35.57	0	1080269..1081297	+	342	161509256	purM	USA300HOU_1016	-	phosphoribosylaminoimidazole synthetase
991	 34.61	0	1081872..1083359	+	495	161509257	purH	USA300HOU_1017	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
992	 35.66	0	1083381..1084628	+	415	161509258	purD	USA300HOU_1018	-	phosphoribosylamine--glycine ligase
993	 31.10	0	1084893..1085699	-	268	161509259	-	USA300HOU_1019	-	ABC transporter ATP-binding protein
994	 33.26	0	1085692..1087092	-	466	161509260	-	USA300HOU_1020	-	ABC transporter ATP-binding protein
995	 37.15	+1	1087107..1087682	-	191	161509261	-	USA300HOU_1021	-	hypothetical protein
996	 28.94	0	1088552..1089847	+	431	161509262	-	USA300HOU_1022	-	hypothetical protein
997	 31.46	0	1090272..1091444	+	390	161509263	-	USA300HOU_1023	-	hypothetical protein
998	 30.57	0	1091498..1092040	+	180	161509264	-	USA300HOU_1024	-	hypothetical protein
999	 34.83	0	1092194..1092460	+	88	161509265	ptsH	USA300HOU_1025	-	phosphocarrier protein HPr
1000	 35.31	0	1092463..1094181	+	572	161509266	ptsI	USA300HOU_1026	-	PTS family phosphoenolpyruvate (PEP) porter component I
1001	 29.06	0	1094418..1094651	-	77	161509267	-	USA300HOU_1027	-	glutaredoxin
1002	 33.99	0	1094849..1096210	+	453	161509268	cydA	USA300HOU_1028	-	cytochrome d ubiquinol oxidase subunit I
1003	 30.39	0	1096207..1097226	+	339	161509269	cydB	USA300HOU_1029	-	cytochrome d ubiquinol oxidase subunit II
1004	 35.14	0	1097359..1098021	+	220	161509270	-	USA300HOU_1030	-	Trk family K+ transporter NAD+ binding protein
1005	 33.75	0	1098370..1100067	-	565	161509271	-	USA300HOU_1031	-	hypothetical protein
1006	 31.51	0	1100067..1100285	-	72	161509272	-	USA300HOU_1032	-	hypothetical protein
1007	 26.83	-1	1100314..1100436	-	40	161509273	-	USA300HOU_1033	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.