IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.63   STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
817	 33.33	0	890704..891582	+	292	161509083	-	USA300HOU_0842	-	hypothetical protein
818	 42.98	+2	891652..891765	+	37	161509084	-	USA300HOU_0843	-	hypothetical protein
819	 39.46	+1	891787..891933	+	48	161509085	-	USA300HOU_0844	-	hypothetical protein
820	 30.49	0	892324..892710	+	128	161509086	-	USA300HOU_0845	-	TOPRIM domain-containing topiosmerase/primase
821	 27.61	-1	892703..892999	+	98	161509087	-	USA300HOU_0846	-	hypothetical protein
822	 34.80	0	893249..894274	+	341	161509088	-	USA300HOU_0847	-	ABC transporter ATP-binding protein
823	 34.91	0	894267..894962	+	231	161509089	-	USA300HOU_0848	-	ABC transporter ATP-binding protein
824	 29.93	0	894980..895801	+	273	161509090	-	USA300HOU_0849	-	ABC transporter ATP-binding protein
825	 31.86	0	895944..897164	-	406	161509091	-	USA300HOU_0850	-	integrase
826	 26.61	-1	897252..897980	-	242	161509092	-	USA300HOU_0851	-	staphylococcal enterotoxin
827	 28.40	-1	898004..898732	-	242	161509093	-	USA300HOU_0852	-	staphylococcal enterotoxin
828	 32.68	0	898749..899207	-	152	161509094	-	USA300HOU_0853	-	hypothetical protein
829	 32.43	0	899219..899551	-	110	161509095	-	USA300HOU_0854	-	bacteriophage repressor
830	 32.95	0	899744..900007	+	87	161509096	-	USA300HOU_0855	-	bacteriophage repressor
831	 34.80	0	900000..900272	+	90	161509097	-	USA300HOU_0856	-	hypothetical protein
832	 31.28	0	900263..900457	+	64	161509098	-	USA300HOU_0857	-	hypothetical protein
833	 26.96	-1	900424..900627	+	67	161509099	-	USA300HOU_0858	-	hypothetical protein
834	 30.73	0	900629..901012	+	127	161509100	-	USA300HOU_0859	-	hypothetical protein
835	 30.92	0	901013..901261	+	82	161509101	-	USA300HOU_0860	-	hypothetical protein
836	 30.64	0	901353..903725	+	790	161509102	-	USA300HOU_0861	-	DNA primase
837	 31.30	0	904396..904740	+	114	161509103	-	USA300HOU_0862	-	hypothetical protein
838	 27.05	-1	904965..905171	+	68	161509104	-	USA300HOU_0863	-	hypothetical protein
839	 31.26	0	905158..906216	+	352	161509105	-	USA300HOU_0864	-	hypothetical protein
840	 29.47	0	906400..906891	+	163	161509106	-	USA300HOU_0865	-	hypothetical protein
841	 26.42	-1	907320..908288	+	322	161509107	-	USA300HOU_0866	-	hypothetical protein
842	 30.45	0	908523..909077	-	184	161509108	ear	USA300HOU_0867	-	Ear protein
843	 29.74	0	910111..910305	+	64	161509109	-	USA300HOU_0868	-	hypothetical protein
844	 33.10	0	910538..911389	-	283	161509110	-	USA300HOU_0869	-	hypothetical protein
845	 33.86	0	911717..912478	+	253	161509111	-	USA300HOU_0870	-	ABC transporter ATP-binding protein
846	 34.25	0	912576..913883	+	435	161509112	-	USA300HOU_0871	-	ABC transporter ATP-binding protein
847	 27.54	-1	913876..914013	-	45	161509113	-	USA300HOU_0872	-	hypothetical protein
848	 37.25	+1	913989..915239	+	416	161509114	sufS	USA300HOU_0873	-	selenocysteine lyase
849	 36.13	0	915229..915693	+	154	161509115	iscU	USA300HOU_0874	-	iron-sulfur (Fe-S) cluster formation protein IscU
850	 34.41	0	915844..917241	+	465	161509116	-	USA300HOU_0875	-	ABC transporter ATP-binding protein
851	 29.63	0	917431..917565	+	44	161509117	-	USA300HOU_0876	-	hypothetical protein
852	 26.67	-1	917571..917885	-	104	161509118	-	USA300HOU_0877	-	hypothetical protein
853	 32.76	0	918250..919290	+	346	161509119	-	USA300HOU_0878	-	CBS domain-containing protein
854	 37.92	+1	919304..920371	+	355	161509120	-	USA300HOU_0879	-	dioxygenase
855	 38.52	+1	920294..920428	-	44	161509121	-	USA300HOU_0880	-	hypothetical protein
856	 32.32	0	920438..920536	+	32	161509122	-	USA300HOU_0881	-	hypothetical protein
857	 33.45	0	920584..921432	+	282	161509123	-	USA300HOU_0882	-	hypothetical protein
858	 32.25	0	921445..922272	+	275	161509124	-	USA300HOU_0883	-	hypothetical protein
859	 33.48	0	922299..923618	+	439	161509125	-	USA300HOU_0884	-	bifunctional 5-nucleotidase/2,3-cyclic phosphodiesterase
860	 36.27	0	923702..924619	+	305	161509126	lipA	USA300HOU_0885	-	lipoyl synthase
861	 27.74	-1	924740..925132	+	130	161509127	-	USA300HOU_0886	-	hypothetical protein
862	 31.84	0	925211..925477	-	88	161509128	-	USA300HOU_0887	-	hypothetical protein
863	 29.89	0	925575..926009	+	144	161509129	-	USA300HOU_0888	-	hypothetical protein
864	 34.87	0	926009..926788	+	259	161509130	-	USA300HOU_0889	-	haloacid dehalogenase
865	 34.27	0	926821..927780	+	319	161509131	-	USA300HOU_0890	-	dehydrogenase
866	 17.59	-2	928037..928144	+	35	161509132	-	USA300HOU_0891	-	hypothetical protein
867	 26.14	-1	928192..928344	+	50	161509133	-	USA300HOU_0892	-	hypothetical protein
868	 34.22	0	928360..929817	+	485	161509134	dltA	USA300HOU_0893	-	D-alanine--D-alanyl carrier protein ligase
869	 29.96	0	929814..931028	+	404	161509135	dltB	USA300HOU_0894	-	D-alanine transfer protein DltB
870	 29.11	0	931046..931282	+	78	161509136	dltC	USA300HOU_0895	-	D-alanine--poly(phosphoribitol) ligase subunit 2
871	 32.06	0	931279..932454	+	391	161509137	dltD	USA300HOU_0896	-	D-alanine transfer protein DltD
872	 39.51	+1	932717..932959	-	80	161509138	-	USA300HOU_0897	-	hypothetical protein
873	 30.86	0	933060..933383	+	107	161509139	-	USA300HOU_0898	-	hypothetical protein
874	 36.81	+1	933442..934506	-	354	161509140	-	USA300HOU_0899	-	NADH dehydrogenase
875	 35.02	0	934823..935059	+	78	161509141	-	USA300HOU_0900	-	hypothetical protein
876	 37.22	+1	935072..935431	+	119	161509142	-	USA300HOU_0901	-	hypothetical protein
877	 35.73	0	935885..937093	+	402	161509143	-	USA300HOU_0902	-	NADH dehydrogenase
878	 32.65	0	939110..940426	+	438	161509144	-	USA300HOU_0903	-	NhaC family Na(+)/H(+) antiporter
879	 33.07	0	940445..940819	+	124	161509145	-	USA300HOU_0904	-	hypothetical protein
880	 34.81	0	940875..942029	-	384	161509146	-	USA300HOU_0905	-	hypothetical protein
881	 32.49	0	942278..942634	-	118	161509147	mnhG2	USA300HOU_0906	-	putative monovalent cation/H+ antiporter subunit G
882	 31.97	0	942612..942905	-	97	161509148	mnhF2	USA300HOU_0907	-	putative monovalent cation/H+ antiporter subunit F
883	 29.58	0	942905..943384	-	159	161509149	mnhE2	USA300HOU_0908	-	putative monovalent cation/H+ antiporter subunit E
884	 33.67	0	943386..944882	-	498	161509150	mnhD2	USA300HOU_0909	-	putative monovalent cation/H+ antiporter subunit D
885	 34.50	0	944875..945216	-	113	161509151	mnhC2	USA300HOU_0910	-	putative monovalent cation/H+ antiporter subunit C
886	 33.57	0	945216..945644	-	142	161509152	mnhB2	USA300HOU_0911	-	putative monovalent cation/H+ antiporter subunit B
887	 33.46	0	945637..948042	-	801	161509153	mnhA2	USA300HOU_0912	-	monovalent cation/H+ antiporter subunit A
888	 34.11	0	948173..948556	-	127	161509154	kapB	USA300HOU_0913	-	hypothetical protein
889	 35.35	0	948620..949213	+	197	161509155	prsA1	USA300HOU_0914	-	peptidylprolyl isomerase
890	 36.79	+1	950368..951495	+	375	161509156	-	USA300HOU_0915	-	flavin reductase
891	 35.60	0	951803..952993	+	396	161509157	rocD	USA300HOU_0916	-	ornithine--oxo-acid transaminase
892	 36.95	+1	953102..954346	+	414	161509158	gudB	USA300HOU_0917	-	glutamate dehydrogenase
893	 33.12	0	954849..955778	-	309	161509159	glpQ2	USA300HOU_0918	-	glycerophosphodiester phosphodiesterase
894	 34.49	0	956020..957399	-	459	161509160	argH	USA300HOU_0919	-	argininosuccinate lyase
895	 35.32	0	957389..958594	-	401	161509161	argG	USA300HOU_0920	-	argininosuccinate synthase
896	 33.43	0	959224..960276	+	350	161509162	pgi	USA300HOU_0921	-	glucose-6-phosphate isomerase
897	 30.56	0	960601..961176	+	191	161509163	-	USA300HOU_0922	-	hypothetical protein
898	 31.62	0	961181..961705	+	174	161509164	spsA	USA300HOU_0923	-	type I general secretory pathway signal peptidase I
899	 31.28	0	961712..962296	+	194	161509165	spsB	USA300HOU_0924	-	type I general secretory pathway signal peptidase I
900	 32.30	0	962456..965932	+	1158	161509166	rexB	USA300HOU_0925	-	ATP-dependent nuclease Rex subunit B
901	 33.47	0	965933..969586	+	1217	161509167	rexA	USA300HOU_0926	-	ATP-dependent nuclease Rex subunit A
902	 32.89	0	969752..970654	+	300	161509168	-	USA300HOU_0927	-	fumarylacetoacetase
903	 32.82	0	970983..971372	+	129	161509169	-	USA300HOU_0928	-	hypothetical protein
904	 35.31	0	971543..972859	-	438	161509170	cdr	USA300HOU_0929	-	coenzyme A disulfide reductase
905	 31.52	0	972911..973735	-	274	161509171	-	USA300HOU_0930	-	HAD family phosphatase
906	 36.25	0	973849..974157	+	102	161509172	-	USA300HOU_0931	-	hypothetical protein
907	 30.47	0	974704..976518	+	604	161509173	-	USA300HOU_0932	-	acyltransferase
908	 33.79	0	976721..979330	+	869	161509174	clpB	USA300HOU_0933	-	endopeptidase ClpB
909	 27.24	-1	979389..980258	-	289	161509175	-	USA300HOU_0934	-	LysR family transcriptional regulator
910	 26.79	-1	980368..981513	+	381	161509176	leuA1	USA300HOU_0935	-	2-isopropylmalate synthase
911	 25.55	-1	981497..982138	+	213	161509177	-	USA300HOU_0936	-	hypothetical protein
912	 26.00	-1	982129..982278	-	49	161509178	-	USA300HOU_0937	-	hypothetical protein
913	 23.68	-2	982131..983249	+	372	161509179	-	USA300HOU_0938	-	hypothetical protein
914	 33.10	0	984059..984493	+	144	161509180	eap	USA300HOU_0939	-	extracellular adherence protein Eap
915	 34.41	0	984750..984935	-	61	161509181	-	USA300HOU_0940	-	hypothetical protein
916	 35.46	0	985230..986171	+	313	161509182	fabH1	USA300HOU_0941	-	3-oxoacyl-(acyl carrier protein) synthase III
32.63	MEAN

3.73	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.