IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
766	 29.38	0	845554..846993	+	479	161509032	-	USA300HOU_0791	-	hypothetical protein
767	 37.18	+1	847060..847995	+	311	161509033	trxB1	USA300HOU_0792	-	thioredoxin-disulfide reductase
768	 47.44	+2	848369..848680	-	103	161509034	-	USA300HOU_0793	-	hypothetical protein
769	 31.80	0	848875..849786	+	303	161509035	-	USA300HOU_0794	-	hypothetical protein
770	 33.43	0	849783..850778	+	331	161509036	-	USA300HOU_0795	-	hypothetical protein
771	 33.02	0	850888..851832	+	314	161509037	-	USA300HOU_0796	-	hypothetical protein
772	 34.35	0	852406..852993	+	195	161509038	clpP	USA300HOU_0797	-	endopeptidase ClpP
773	 33.22	0	853236..854138	-	300	161509039	-	USA300HOU_0798	-	hypothetical protein
774	 35.40	0	854840..855469	+	209	161509040	-	USA300HOU_0799	-	hypothetical protein
775	 49.66	+2	855658..855804	-	48	161509041	-	USA300HOU_0800	-	hypothetical protein
776	 37.38	+1	856229..857242	+	337	161509042	-	USA300HOU_0801	-	glycolytic operon regulator
777	 37.88	+1	857295..858305	+	336	161509043	gap	USA300HOU_0802	-	glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
778	 34.76	0	858444..859634	+	396	161509044	pgk	USA300HOU_0803	-	phosphoglycerate kinase
779	 36.75	+1	859756..860517	+	253	161509045	tpi	USA300HOU_0804	-	triosephosphate isomerase
780	 36.56	+1	860520..862037	+	505	161509046	pgm	USA300HOU_0805	-	phosphoglyceromutase
781	 36.93	+1	862167..863471	+	434	161509047	eno	USA300HOU_0806	-	phosphopyruvate hydratase
782	 31.59	0	863811..864269	+	152	161509048	-	USA300HOU_0807	-	hypothetical protein
783	 30.34	0	864336..864569	+	77	161509049	secG	USA300HOU_0808	-	preprotein translocase subunit SecG
784	 33.74	0	864685..865425	+	246	161509050	-	USA300HOU_0809	-	carboxylesterase
785	 34.81	0	865459..867831	+	790	161509051	vacB	USA300HOU_0810	-	ribonuclease R
786	 36.34	0	867853..868317	+	154	161509052	-	USA300HOU_0811	-	SsrA-binding protein
787	 29.43	0	869091..869372	+	93	161509053	-	USA300HOU_0812	-	hypothetical protein
788	 24.07	-2	869639..869962	-	107	161509054	-	USA300HOU_0813	-	hypothetical protein
789	 36.73	+1	869978..870124	-	48	161509055	-	USA300HOU_0814	-	hypothetical protein
790	 27.30	-1	870316..871044	-	242	161509056	-	USA300HOU_0815	-	hypothetical protein
791	 24.84	-2	871483..871635	+	50	161509057	-	USA300HOU_0816	-	hypothetical protein
792	 29.95	0	871643..872086	+	147	161509058	-	USA300HOU_0817	-	hypothetical protein
793	 34.84	0	872303..872833	+	176	161509059	-	USA300HOU_0818	-	acetyltransferase
794	 39.58	+1	873096..875897	+	933	161509060	clfA	USA300HOU_0819	-	fibrinogen-binding protein
795	 29.67	0	876118..877644	+	508	161509061	vwb	USA300HOU_0820	-	von Willebrand factor-binding protein
796	 31.77	0	877995..879017	+	340	161509062	emp	USA300HOU_0821	-	extracellular matrix protein-binding protein
797	 33.55	0	879352..879822	+	156	161509063	-	USA300HOU_0822	-	hypothetical protein
798	 34.06	0	880163..880849	+	228	161509064	nuc	USA300HOU_0823	-	micrococcal nuclease
799	 39.80	+1	881206..881406	+	66	161509065	csp	USA300HOU_0824	-	cold-shock protein
800	 31.05	0	881902..882120	-	72	161509066	-	USA300HOU_0825	-	hypothetical protein
801	 28.07	-1	882182..882466	-	94	161509067	-	USA300HOU_0826	-	hypothetical protein
802	 31.23	0	882554..883123	-	189	161509068	-	USA300HOU_0827	-	hypothetical protein
803	 24.90	-2	883528..883788	-	86	161509069	-	USA300HOU_0828	-	hypothetical protein
804	 31.86	0	884129..884332	+	67	161509070	-	USA300HOU_0829	-	hypothetical protein
805	 27.00	-1	884329..884565	-	78	161509071	-	USA300HOU_0830	-	hypothetical protein
806	 34.86	0	884781..885371	+	196	161509072	gpmA1	USA300HOU_0831	-	phosphoglycerate mutase
807	 30.42	0	885444..886061	-	205	161509073	-	USA300HOU_0832	-	LysE family L-lysine exporter
808	 29.49	0	886216..886710	-	164	161509074	-	USA300HOU_0833	-	hypothetical protein
809	 24.44	-2	886958..887092	+	44	161509075	-	USA300HOU_0834	-	hypothetical protein
810	 35.70	0	887109..887531	-	140	161509076	osmC	USA300HOU_0835	-	osmotically inducible protein OsmC
811	 32.78	0	887679..888395	+	238	161509077	aroD	USA300HOU_0836	-	3-dehydroquinate dehydratase
812	 32.96	0	888478..889017	+	179	161509078	-	USA300HOU_0837	-	nitroreductase
813	 33.33	0	889167..889487	-	106	161509079	-	USA300HOU_0838	-	thioredoxin
814	 29.69	0	889631..889987	+	118	161509080	arsC1	USA300HOU_0839	-	hypothetical protein
815	 33.33	0	890145..890525	+	126	161509081	gcvH	USA300HOU_0840	-	glycine cleavage system protein H
816	 21.93	-2	890589..890702	+	37	161509082	-	USA300HOU_0841	-	hypothetical protein
817	 33.33	0	890704..891582	+	292	161509083	-	USA300HOU_0842	-	hypothetical protein
818	 42.98	+2	891652..891765	+	37	161509084	-	USA300HOU_0843	-	hypothetical protein
819	 39.46	+1	891787..891933	+	48	161509085	-	USA300HOU_0844	-	hypothetical protein
820	 30.49	0	892324..892710	+	128	161509086	-	USA300HOU_0845	-	TOPRIM domain-containing topiosmerase/primase
821	 27.61	-1	892703..892999	+	98	161509087	-	USA300HOU_0846	-	hypothetical protein
822	 34.80	0	893249..894274	+	341	161509088	-	USA300HOU_0847	-	ABC transporter ATP-binding protein
823	 34.91	0	894267..894962	+	231	161509089	-	USA300HOU_0848	-	ABC transporter ATP-binding protein
824	 29.93	0	894980..895801	+	273	161509090	-	USA300HOU_0849	-	ABC transporter ATP-binding protein
825	 31.86	0	895944..897164	-	406	161509091	-	USA300HOU_0850	-	integrase
826	 26.61	-1	897252..897980	-	242	161509092	-	USA300HOU_0851	-	staphylococcal enterotoxin
827	 28.40	-1	898004..898732	-	242	161509093	-	USA300HOU_0852	-	staphylococcal enterotoxin
828	 32.68	0	898749..899207	-	152	161509094	-	USA300HOU_0853	-	hypothetical protein
829	 32.43	0	899219..899551	-	110	161509095	-	USA300HOU_0854	-	bacteriophage repressor
830	 32.95	0	899744..900007	+	87	161509096	-	USA300HOU_0855	-	bacteriophage repressor
831	 34.80	0	900000..900272	+	90	161509097	-	USA300HOU_0856	-	hypothetical protein
832	 31.28	0	900263..900457	+	64	161509098	-	USA300HOU_0857	-	hypothetical protein
833	 26.96	-1	900424..900627	+	67	161509099	-	USA300HOU_0858	-	hypothetical protein
834	 30.73	0	900629..901012	+	127	161509100	-	USA300HOU_0859	-	hypothetical protein
835	 30.92	0	901013..901261	+	82	161509101	-	USA300HOU_0860	-	hypothetical protein
836	 30.64	0	901353..903725	+	790	161509102	-	USA300HOU_0861	-	DNA primase
837	 31.30	0	904396..904740	+	114	161509103	-	USA300HOU_0862	-	hypothetical protein
838	 27.05	-1	904965..905171	+	68	161509104	-	USA300HOU_0863	-	hypothetical protein
839	 31.26	0	905158..906216	+	352	161509105	-	USA300HOU_0864	-	hypothetical protein
840	 29.47	0	906400..906891	+	163	161509106	-	USA300HOU_0865	-	hypothetical protein
841	 26.42	-1	907320..908288	+	322	161509107	-	USA300HOU_0866	-	hypothetical protein
842	 30.45	0	908523..909077	-	184	161509108	ear	USA300HOU_0867	-	Ear protein
843	 29.74	0	910111..910305	+	64	161509109	-	USA300HOU_0868	-	hypothetical protein
844	 33.10	0	910538..911389	-	283	161509110	-	USA300HOU_0869	-	hypothetical protein
845	 33.86	0	911717..912478	+	253	161509111	-	USA300HOU_0870	-	ABC transporter ATP-binding protein
846	 34.25	0	912576..913883	+	435	161509112	-	USA300HOU_0871	-	ABC transporter ATP-binding protein
847	 27.54	-1	913876..914013	-	45	161509113	-	USA300HOU_0872	-	hypothetical protein
848	 37.25	+1	913989..915239	+	416	161509114	sufS	USA300HOU_0873	-	selenocysteine lyase
849	 36.13	0	915229..915693	+	154	161509115	iscU	USA300HOU_0874	-	iron-sulfur (Fe-S) cluster formation protein IscU
850	 34.41	0	915844..917241	+	465	161509116	-	USA300HOU_0875	-	ABC transporter ATP-binding protein
851	 29.63	0	917431..917565	+	44	161509117	-	USA300HOU_0876	-	hypothetical protein
852	 26.67	-1	917571..917885	-	104	161509118	-	USA300HOU_0877	-	hypothetical protein
853	 32.76	0	918250..919290	+	346	161509119	-	USA300HOU_0878	-	CBS domain-containing protein
854	 37.92	+1	919304..920371	+	355	161509120	-	USA300HOU_0879	-	dioxygenase
855	 38.52	+1	920294..920428	-	44	161509121	-	USA300HOU_0880	-	hypothetical protein
856	 32.32	0	920438..920536	+	32	161509122	-	USA300HOU_0881	-	hypothetical protein
857	 33.45	0	920584..921432	+	282	161509123	-	USA300HOU_0882	-	hypothetical protein
858	 32.25	0	921445..922272	+	275	161509124	-	USA300HOU_0883	-	hypothetical protein
859	 33.48	0	922299..923618	+	439	161509125	-	USA300HOU_0884	-	bifunctional 5-nucleotidase/2,3-cyclic phosphodiesterase
860	 36.27	0	923702..924619	+	305	161509126	lipA	USA300HOU_0885	-	lipoyl synthase
861	 27.74	-1	924740..925132	+	130	161509127	-	USA300HOU_0886	-	hypothetical protein
862	 31.84	0	925211..925477	-	88	161509128	-	USA300HOU_0887	-	hypothetical protein
863	 29.89	0	925575..926009	+	144	161509129	-	USA300HOU_0888	-	hypothetical protein
864	 34.87	0	926009..926788	+	259	161509130	-	USA300HOU_0889	-	haloacid dehalogenase
865	 34.27	0	926821..927780	+	319	161509131	-	USA300HOU_0890	-	dehydrogenase
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.