IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
700	 32.30	0	776419..777768	+	449	161508966	-	USA300HOU_0725	-	CBS domain-containing protein
701	 31.79	0	777990..778829	+	279	161508967	-	USA300HOU_0726	-	dehydrogenase
702	 31.30	0	778961..779944	+	327	161508968	-	USA300HOU_0727	-	glycosyltransferase
703	 30.49	0	780016..781071	-	351	161508969	saeS	USA300HOU_0728	-	sensor histidine kinase SaeS
704	 32.75	0	781071..781757	-	228	161508970	saeR	USA300HOU_0729	-	response regulator SaeR
705	 33.97	0	781732..782205	-	157	161508971	-	USA300HOU_0730	-	hypothetical protein
706	 31.07	0	782547..782987	-	146	161508972	-	USA300HOU_0731	-	hypothetical protein
707	 25.98	-1	783267..783851	-	194	161508973	-	USA300HOU_0732	-	hypothetical protein
708	 36.13	0	783950..784663	-	237	161508974	exsD	USA300HOU_0733	-	organic radical-activating protein
709	 32.86	0	784667..785086	-	139	161508975	-	USA300HOU_0734	-	6-pyruvoyltetrahydropterin synthase
710	 34.53	0	785088..785756	-	222	161508976	exsB	USA300HOU_0735	-	ExsB family post-transcriptional regulator
711	 33.84	0	786107..786700	+	197	161508977	pabA	USA300HOU_0736	-	anthranilate synthase
712	 32.30	0	786675..787835	+	386	161508978	pabB	USA300HOU_0737	-	anthranilate synthase
713	 30.87	0	787835..788443	+	202	161508979	pabC	USA300HOU_0738	-	aminodeoxychorismate lyase
714	 30.92	0	788509..788715	+	68	161508980	-	USA300HOU_0739	-	hypothetical protein
715	 29.96	0	788803..789513	+	236	161508981	-	USA300HOU_0740	-	hypothetical protein
716	 34.43	0	789497..790501	+	334	161508982	-	USA300HOU_0741	-	hypothetical protein
717	 31.12	0	790975..792915	+	646	161508983	-	USA300HOU_0742	-	phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase
718	 33.17	0	793186..795069	+	627	161508984	-	USA300HOU_0743	-	ABC transporter ATP-binding protein
719	 31.99	0	795081..796862	+	593	161508985	recQ1	USA300HOU_0744	-	ATP-dependent helicase RecQ
720	 33.64	0	797084..798061	+	325	161508986	-	USA300HOU_0745	-	glycine betaine/carnitine/choline ABC transporter ATP-binding protein
721	 31.49	0	798054..799568	+	504	161508987	-	USA300HOU_0746	-	glycine betaine/carnitine/choline ABC transporter membrane protein
722	 33.62	0	799808..800866	+	352	161508988	hisC1	USA300HOU_0747	-	histidinol-phosphate transaminase
723	 32.04	0	801217..801759	+	180	161508989	-	USA300HOU_0748	-	hypothetical protein
724	 31.92	0	802383..803300	-	305	161508990	dgkA1	USA300HOU_0749	-	diacylglycerol kinase
725	 25.49	-1	803391..803492	+	33	161508991	-	USA300HOU_0750	-	hypothetical protein
726	 34.26	0	803570..805075	-	501	161508992	-	USA300HOU_0751	-	POT family proton (H+)-dependent oligopeptide transporter
727	 31.54	0	805416..805916	-	166	161508993	-	USA300HOU_0752	-	7-cyano-7-deazaguanine reductase
728	 32.99	0	805936..806802	-	288	161508994	-	USA300HOU_0753	-	DMT superfamily drug/metabolite transporter
729	 34.09	0	807603..808001	+	132	161508995	nrdI	USA300HOU_0754	-	ribonucleotide reductase stimulatory protein
730	 32.86	0	807964..810069	+	701	161508996	nrdE	USA300HOU_0755	-	ribonucleotide-diphosphate reductase subunit alpha
731	 32.61	0	810187..811158	+	323	161508997	nrdF	USA300HOU_0756	-	ribonucleotide-diphosphate reductase subunit beta
732	 49.52	+2	811291..811395	+	34	161508998	-	USA300HOU_0757	-	hypothetical protein
733	 22.44	-2	811672..811827	+	51	161508999	-	USA300HOU_0758	-	hypothetical protein
734	 31.66	0	811824..812837	+	337	161509000	-	USA300HOU_0759	-	iron (Fe+3) ABC transporter membrane protein
735	 29.68	0	812824..813780	+	318	161509001	-	USA300HOU_0760	-	iron (Fe+3) ABC transporter membrane protein
736	 30.45	0	813777..814538	+	253	161509002	-	USA300HOU_0761	-	iron (Fe+3) ABC transporter ATP-binding protein
737	 29.54	0	814657..815685	+	342	161509003	-	USA300HOU_0762	-	iron (Fe+3) ABC transporter binding protein
738	 32.40	0	816002..816322	-	106	161509004	-	USA300HOU_0763	-	hypothetical protein
739	 35.61	0	816334..817257	-	307	161509005	murB	USA300HOU_0764	-	UDP-N-acetylmuramate dehydrogenase
740	 22.48	-2	817247..817375	-	42	161509006	-	USA300HOU_0765	-	hypothetical protein
741	 27.94	-1	817384..817902	-	172	161509007	-	USA300HOU_0766	-	hypothetical protein
742	 27.42	-1	818022..818900	+	292	161509008	-	USA300HOU_0767	-	hypothetical protein
743	 32.40	0	819054..819374	+	106	161509009	-	USA300HOU_0768	-	hypothetical protein
744	 34.40	0	819799..820923	+	374	161509010	-	USA300HOU_0769	-	glycerate kinase
745	 35.37	0	821112..822338	-	408	161509011	pepT	USA300HOU_0770	-	peptidase T
746	 33.33	0	822352..822846	-	164	161509012	-	USA300HOU_0771	-	hypothetical protein
747	 35.70	0	822864..823625	-	253	161509013	-	USA300HOU_0772	-	hypothetical protein
748	 30.53	0	823821..824891	-	356	161509014	-	USA300HOU_0773	-	diguanylate cyclase
749	 31.53	0	825209..826264	+	351	161509015	-	USA300HOU_0774	-	hypothetical protein
750	 33.96	0	826434..827075	-	213	161509016	-	USA300HOU_0775	-	hypothetical protein
751	 34.03	0	827219..828085	+	288	161509017	-	USA300HOU_0776	-	hypothetical protein
752	 32.32	0	828449..829531	+	360	161509018	-	USA300HOU_0777	-	superfamily II DNA/RNA helicase ComFA
753	 30.83	0	829521..830198	+	225	161509019	-	USA300HOU_0778	-	superfamily II DNA/RNA helicase ComFC
754	 33.16	0	830259..830831	+	190	161509020	-	USA300HOU_0779	-	ribosome-associated inhibitor protein Y
755	 35.03	0	831245..833776	+	843	161509021	secA1	USA300HOU_0780	-	preprotein translocase subunit SecA
756	 27.62	-1	833818..833922	+	34	161509022	-	USA300HOU_0781	-	hypothetical protein
757	 37.33	+1	834326..835201	+	291	161509023	prfB	USA300HOU_0782	-	peptide chain release factor 2
758	 35.24	0	835610..836449	+	279	161509024	-	USA300HOU_0783	-	hypothetical protein
759	 28.42	-1	836623..837273	+	216	161509025	-	USA300HOU_0784	-	HAD family phosphatase
760	 30.38	0	837270..837506	+	78	161509026	-	USA300HOU_0785	-	hypothetical protein
761	 35.05	0	837775..839760	+	661	161509027	uvrB	USA300HOU_0786	-	excinuclease ABC subunit B
762	 35.41	0	839768..842614	+	948	161509028	uvrA	USA300HOU_0787	-	excision endonuclease subunit UvrA
763	 35.58	0	843276..844208	+	310	161509029	hprK	USA300HOU_0788	-	HPr kinase/phosphorylase
764	 32.74	0	844214..845053	+	279	161509030	lgt	USA300HOU_0789	-	prolipoprotein diacylglyceryl transferase
765	 31.69	0	845061..845546	+	161	161509031	-	USA300HOU_0790	-	acetyltransferase
766	 29.38	0	845554..846993	+	479	161509032	-	USA300HOU_0791	-	hypothetical protein
767	 37.18	+1	847060..847995	+	311	161509033	trxB1	USA300HOU_0792	-	thioredoxin-disulfide reductase
768	 47.44	+2	848369..848680	-	103	161509034	-	USA300HOU_0793	-	hypothetical protein
769	 31.80	0	848875..849786	+	303	161509035	-	USA300HOU_0794	-	hypothetical protein
770	 33.43	0	849783..850778	+	331	161509036	-	USA300HOU_0795	-	hypothetical protein
771	 33.02	0	850888..851832	+	314	161509037	-	USA300HOU_0796	-	hypothetical protein
772	 34.35	0	852406..852993	+	195	161509038	clpP	USA300HOU_0797	-	endopeptidase ClpP
773	 33.22	0	853236..854138	-	300	161509039	-	USA300HOU_0798	-	hypothetical protein
774	 35.40	0	854840..855469	+	209	161509040	-	USA300HOU_0799	-	hypothetical protein
775	 49.66	+2	855658..855804	-	48	161509041	-	USA300HOU_0800	-	hypothetical protein
776	 37.38	+1	856229..857242	+	337	161509042	-	USA300HOU_0801	-	glycolytic operon regulator
777	 37.88	+1	857295..858305	+	336	161509043	gap	USA300HOU_0802	-	glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
778	 34.76	0	858444..859634	+	396	161509044	pgk	USA300HOU_0803	-	phosphoglycerate kinase
779	 36.75	+1	859756..860517	+	253	161509045	tpi	USA300HOU_0804	-	triosephosphate isomerase
780	 36.56	+1	860520..862037	+	505	161509046	pgm	USA300HOU_0805	-	phosphoglyceromutase
781	 36.93	+1	862167..863471	+	434	161509047	eno	USA300HOU_0806	-	phosphopyruvate hydratase
782	 31.59	0	863811..864269	+	152	161509048	-	USA300HOU_0807	-	hypothetical protein
783	 30.34	0	864336..864569	+	77	161509049	secG	USA300HOU_0808	-	preprotein translocase subunit SecG
784	 33.74	0	864685..865425	+	246	161509050	-	USA300HOU_0809	-	carboxylesterase
785	 34.81	0	865459..867831	+	790	161509051	vacB	USA300HOU_0810	-	ribonuclease R
786	 36.34	0	867853..868317	+	154	161509052	-	USA300HOU_0811	-	SsrA-binding protein
787	 29.43	0	869091..869372	+	93	161509053	-	USA300HOU_0812	-	hypothetical protein
788	 24.07	-2	869639..869962	-	107	161509054	-	USA300HOU_0813	-	hypothetical protein
789	 36.73	+1	869978..870124	-	48	161509055	-	USA300HOU_0814	-	hypothetical protein
790	 27.30	-1	870316..871044	-	242	161509056	-	USA300HOU_0815	-	hypothetical protein
791	 24.84	-2	871483..871635	+	50	161509057	-	USA300HOU_0816	-	hypothetical protein
792	 29.95	0	871643..872086	+	147	161509058	-	USA300HOU_0817	-	hypothetical protein
793	 34.84	0	872303..872833	+	176	161509059	-	USA300HOU_0818	-	acetyltransferase
794	 39.58	+1	873096..875897	+	933	161509060	clfA	USA300HOU_0819	-	fibrinogen-binding protein
795	 29.67	0	876118..877644	+	508	161509061	vwb	USA300HOU_0820	-	von Willebrand factor-binding protein
796	 31.77	0	877995..879017	+	340	161509062	emp	USA300HOU_0821	-	extracellular matrix protein-binding protein
797	 33.55	0	879352..879822	+	156	161509063	-	USA300HOU_0822	-	hypothetical protein
798	 34.06	0	880163..880849	+	228	161509064	nuc	USA300HOU_0823	-	micrococcal nuclease
799	 39.80	+1	881206..881406	+	66	161509065	csp	USA300HOU_0824	-	cold-shock protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.