IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
653	 27.97	-1	730722..731150	+	142	161508919	-	USA300HOU_0677	-	hypothetical protein
654	 34.91	0	731359..731865	-	168	161508920	-	USA300HOU_0678	-	hypothetical protein
655	 31.49	0	731978..732901	+	307	161508921	-	USA300HOU_0679	-	hypothetical protein
656	 31.11	0	732917..733591	+	224	161508922	-	USA300HOU_0680	-	response regulator
657	 30.26	0	733584..734624	+	346	161508923	-	USA300HOU_0681	-	sensor histidine kinase
658	 31.50	0	734768..735529	+	253	161508924	vraF	USA300HOU_0682	-	ABC transporter ATP-binding protein
659	 28.68	-1	735519..737408	+	629	161508925	vraE	USA300HOU_0683	-	ABC transporter ATP-binding protein
660	 28.16	-1	738133..738750	+	205	161508926	-	USA300HOU_0684	-	hypothetical protein
661	 37.00	+1	738766..739773	+	335	161508927	-	USA300HOU_0685	-	inorganic phosphate transporter
662	 37.97	+1	740361..741158	-	265	161508928	-	USA300HOU_0686	-	LysM domain-containing protein
663	 29.15	0	741519..742163	+	214	161508929	-	USA300HOU_0687	-	hypothetical protein
664	 24.65	-2	745089..745514	+	141	161508930	sarX	USA300HOU_0689	-	hypothetical protein
665	 36.12	0	745704..746420	+	238	161508931	-	USA300HOU_0690	-	hypothetical protein
666	 33.97	0	746420..746893	+	157	161508932	-	USA300HOU_0691	-	hypothetical protein
667	 23.33	-2	746982..747101	+	39	161508933	-	USA300HOU_0692	-	hypothetical protein
668	 29.46	0	747246..747890	+	214	161508934	-	USA300HOU_0693	-	hypothetical protein
669	 32.06	0	748006..748872	+	288	161508935	-	USA300HOU_0694	-	LysR family transcriptional regulator
670	 39.58	+1	748932..749027	+	31	161508936	-	USA300HOU_0695	-	hypothetical protein
671	 32.35	0	749073..750293	+	406	161508937	-	USA300HOU_0696	-	major facilitator superfamily sugar:cation symporter
672	 30.27	0	750290..750778	+	162	161508938	-	USA300HOU_0697	-	hypothetical protein
673	 27.97	-1	750877..751566	-	229	161508939	-	USA300HOU_0698	-	hypothetical protein
674	 29.28	0	751693..752136	+	147	161508940	-	USA300HOU_0699	-	GNAT family acetyltransferase
675	 29.29	0	752203..752598	+	131	161508941	-	USA300HOU_0700	-	hypothetical protein
676	 32.00	0	752736..753035	+	99	161508942	-	USA300HOU_0701	-	hypothetical protein
677	 33.70	0	753115..753657	+	180	161508943	-	USA300HOU_0702	-	GNAT family acetyltransferase
678	 36.33	0	753753..754319	-	188	161508944	-	USA300HOU_0703	-	hypothetical protein
679	 33.77	0	754321..754779	-	152	161508945	-	USA300HOU_0704	-	hypothetical protein
680	 30.70	0	754782..755465	-	227	161508946	-	USA300HOU_0705	-	hypothetical protein
681	 33.33	0	755637..756512	-	291	161508947	bacA	USA300HOU_0706	-	undecaprenyl pyrophosphate phosphatase
682	 32.35	0	756725..758356	+	543	161508948	-	USA300HOU_0707	-	ABC transporter ATP-binding protein
683	 32.44	0	758353..760026	+	557	161508949	-	USA300HOU_0708	-	ABC transporter ATP-binding protein
684	 33.11	0	760153..760596	-	147	161508950	-	USA300HOU_0709	-	MarR family transcriptional regulator
685	 31.07	0	760823..761749	+	308	161508951	cobW2	USA300HOU_0710	-	cobalamin (vitamin B12) biosynthesis protein
686	 33.66	0	761852..762760	+	302	161508952	-	USA300HOU_0711	-	aldo/keto reductase
687	 27.08	-1	762795..763082	+	95	161508953	-	USA300HOU_0712	-	hypothetical protein
688	 35.52	0	763365..764918	+	517	161508954	-	USA300HOU_0713	-	DASS family divalent anion:sodium (Na+) symporter
689	 33.92	0	765004..766377	+	457	161508955	phrB	USA300HOU_0714	-	deoxyribodipyrimidine photo-lyase
690	 30.53	0	766532..766816	-	94	161508956	-	USA300HOU_0715	-	hypothetical protein
691	 29.45	0	766813..767430	-	205	161508957	-	USA300HOU_0716	-	hypothetical protein
692	 34.52	0	767616..768038	-	140	161508958	-	USA300HOU_0717	-	hypothetical protein
693	 33.42	0	768247..769413	+	388	161508959	norA	USA300HOU_0718	-	major facilitator transporter
694	 27.59	-1	769706..770158	+	150	161508960	-	USA300HOU_0719	-	hypothetical protein
695	 35.82	0	770332..770814	+	160	161508961	-	USA300HOU_0720	-	transcriptional regulator
696	 31.89	0	771067..771828	+	253	161508962	-	USA300HOU_0721	-	DeoR family transcriptional regulator
697	 36.92	+1	771825..772745	+	306	161508963	fruK	USA300HOU_0722	-	1-phosphofructokinase
698	 37.72	+1	772751..774709	+	652	161508964	fruA	USA300HOU_0723	-	PTS family fructose/mannitol (fru) porter component IIABC
699	 35.96	0	775017..776198	+	393	161508965	nagA	USA300HOU_0724	-	N-acetylglucosamine-6-phosphate deacetylase
700	 32.30	0	776419..777768	+	449	161508966	-	USA300HOU_0725	-	CBS domain-containing protein
701	 31.79	0	777990..778829	+	279	161508967	-	USA300HOU_0726	-	dehydrogenase
702	 31.30	0	778961..779944	+	327	161508968	-	USA300HOU_0727	-	glycosyltransferase
703	 30.49	0	780016..781071	-	351	161508969	saeS	USA300HOU_0728	-	sensor histidine kinase SaeS
704	 32.75	0	781071..781757	-	228	161508970	saeR	USA300HOU_0729	-	response regulator SaeR
705	 33.97	0	781732..782205	-	157	161508971	-	USA300HOU_0730	-	hypothetical protein
706	 31.07	0	782547..782987	-	146	161508972	-	USA300HOU_0731	-	hypothetical protein
707	 25.98	-1	783267..783851	-	194	161508973	-	USA300HOU_0732	-	hypothetical protein
708	 36.13	0	783950..784663	-	237	161508974	exsD	USA300HOU_0733	-	organic radical-activating protein
709	 32.86	0	784667..785086	-	139	161508975	-	USA300HOU_0734	-	6-pyruvoyltetrahydropterin synthase
710	 34.53	0	785088..785756	-	222	161508976	exsB	USA300HOU_0735	-	ExsB family post-transcriptional regulator
711	 33.84	0	786107..786700	+	197	161508977	pabA	USA300HOU_0736	-	anthranilate synthase
712	 32.30	0	786675..787835	+	386	161508978	pabB	USA300HOU_0737	-	anthranilate synthase
713	 30.87	0	787835..788443	+	202	161508979	pabC	USA300HOU_0738	-	aminodeoxychorismate lyase
714	 30.92	0	788509..788715	+	68	161508980	-	USA300HOU_0739	-	hypothetical protein
715	 29.96	0	788803..789513	+	236	161508981	-	USA300HOU_0740	-	hypothetical protein
716	 34.43	0	789497..790501	+	334	161508982	-	USA300HOU_0741	-	hypothetical protein
717	 31.12	0	790975..792915	+	646	161508983	-	USA300HOU_0742	-	phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase
718	 33.17	0	793186..795069	+	627	161508984	-	USA300HOU_0743	-	ABC transporter ATP-binding protein
719	 31.99	0	795081..796862	+	593	161508985	recQ1	USA300HOU_0744	-	ATP-dependent helicase RecQ
720	 33.64	0	797084..798061	+	325	161508986	-	USA300HOU_0745	-	glycine betaine/carnitine/choline ABC transporter ATP-binding protein
721	 31.49	0	798054..799568	+	504	161508987	-	USA300HOU_0746	-	glycine betaine/carnitine/choline ABC transporter membrane protein
722	 33.62	0	799808..800866	+	352	161508988	hisC1	USA300HOU_0747	-	histidinol-phosphate transaminase
723	 32.04	0	801217..801759	+	180	161508989	-	USA300HOU_0748	-	hypothetical protein
724	 31.92	0	802383..803300	-	305	161508990	dgkA1	USA300HOU_0749	-	diacylglycerol kinase
725	 25.49	-1	803391..803492	+	33	161508991	-	USA300HOU_0750	-	hypothetical protein
726	 34.26	0	803570..805075	-	501	161508992	-	USA300HOU_0751	-	POT family proton (H+)-dependent oligopeptide transporter
727	 31.54	0	805416..805916	-	166	161508993	-	USA300HOU_0752	-	7-cyano-7-deazaguanine reductase
728	 32.99	0	805936..806802	-	288	161508994	-	USA300HOU_0753	-	DMT superfamily drug/metabolite transporter
729	 34.09	0	807603..808001	+	132	161508995	nrdI	USA300HOU_0754	-	ribonucleotide reductase stimulatory protein
730	 32.86	0	807964..810069	+	701	161508996	nrdE	USA300HOU_0755	-	ribonucleotide-diphosphate reductase subunit alpha
731	 32.61	0	810187..811158	+	323	161508997	nrdF	USA300HOU_0756	-	ribonucleotide-diphosphate reductase subunit beta
732	 49.52	+2	811291..811395	+	34	161508998	-	USA300HOU_0757	-	hypothetical protein
733	 22.44	-2	811672..811827	+	51	161508999	-	USA300HOU_0758	-	hypothetical protein
734	 31.66	0	811824..812837	+	337	161509000	-	USA300HOU_0759	-	iron (Fe+3) ABC transporter membrane protein
735	 29.68	0	812824..813780	+	318	161509001	-	USA300HOU_0760	-	iron (Fe+3) ABC transporter membrane protein
736	 30.45	0	813777..814538	+	253	161509002	-	USA300HOU_0761	-	iron (Fe+3) ABC transporter ATP-binding protein
737	 29.54	0	814657..815685	+	342	161509003	-	USA300HOU_0762	-	iron (Fe+3) ABC transporter binding protein
738	 32.40	0	816002..816322	-	106	161509004	-	USA300HOU_0763	-	hypothetical protein
739	 35.61	0	816334..817257	-	307	161509005	murB	USA300HOU_0764	-	UDP-N-acetylmuramate dehydrogenase
740	 22.48	-2	817247..817375	-	42	161509006	-	USA300HOU_0765	-	hypothetical protein
741	 27.94	-1	817384..817902	-	172	161509007	-	USA300HOU_0766	-	hypothetical protein
742	 27.42	-1	818022..818900	+	292	161509008	-	USA300HOU_0767	-	hypothetical protein
743	 32.40	0	819054..819374	+	106	161509009	-	USA300HOU_0768	-	hypothetical protein
744	 34.40	0	819799..820923	+	374	161509010	-	USA300HOU_0769	-	glycerate kinase
745	 35.37	0	821112..822338	-	408	161509011	pepT	USA300HOU_0770	-	peptidase T
746	 33.33	0	822352..822846	-	164	161509012	-	USA300HOU_0771	-	hypothetical protein
747	 35.70	0	822864..823625	-	253	161509013	-	USA300HOU_0772	-	hypothetical protein
748	 30.53	0	823821..824891	-	356	161509014	-	USA300HOU_0773	-	diguanylate cyclase
749	 31.53	0	825209..826264	+	351	161509015	-	USA300HOU_0774	-	hypothetical protein
750	 33.96	0	826434..827075	-	213	161509016	-	USA300HOU_0775	-	hypothetical protein
751	 34.03	0	827219..828085	+	288	161509017	-	USA300HOU_0776	-	hypothetical protein
752	 32.32	0	828449..829531	+	360	161509018	-	USA300HOU_0777	-	superfamily II DNA/RNA helicase ComFA
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.