IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
609	 24.48	-2	690106..690489	-	127	161508875	-	USA300HOU_0632	-	hypothetical protein
610	 36.40	+1	690501..690761	-	86	161508876	-	USA300HOU_0633	-	hypothetical protein
611	 26.52	-1	690766..691821	-	351	161508877	-	USA300HOU_0634	-	hypothetical protein
612	 32.97	0	691882..692973	-	363	161508878	-	USA300HOU_0635	-	replication initiation protein
613	 32.01	0	693148..693450	-	100	161508879	-	USA300HOU_0636	-	hypothetical protein
614	 30.53	0	693464..693784	-	106	161508880	-	USA300HOU_0637	-	hypothetical protein
615	 23.16	-2	693935..694219	-	94	161508881	-	USA300HOU_0638	-	hypothetical protein
616	 29.78	0	694851..695075	-	74	161508882	-	USA300HOU_0640	-	hypothetical protein
617	 32.35	0	695092..695295	-	67	161508883	-	USA300HOU_0641	-	hypothetical protein
618	 30.12	0	695454..696014	+	186	161508884	-	USA300HOU_0642	-	bacteriophage integrase
619	 32.04	0	696033..698435	+	800	161508885	mnhA1	USA300HOU_0643	-	putative monovalent cation/H+ antiporter subunit A
620	 32.39	0	698422..698847	+	141	161508886	mnhB1	USA300HOU_0644	-	putative monovalent cation/H+ antiporter subunit B
621	 30.72	0	698844..699188	+	114	161508887	mnhC1	USA300HOU_0645	-	putative monovalent cation/H+ antiporter subunit C
622	 33.33	0	699178..700674	+	498	161508888	mnhD1	USA300HOU_0646	-	putative monovalent cation/H+ antiporter subunit D
623	 26.09	-1	700675..701157	+	160	161508889	mnhE1	USA300HOU_0647	-	putative monovalent cation/H+ antiporter subunit E
624	 33.00	0	701154..701456	+	100	161508890	mnhF1	USA300HOU_0648	-	putative monovalent cation/H+ antiporter subunit F
625	 34.02	0	701431..701868	+	145	161508891	mnhG1	USA300HOU_0649	-	putative monovalent cation/H+ antiporter subunit G
626	 31.96	0	702208..704250	+	680	161508892	-	USA300HOU_0650	-	CPA1 family monovalent cation (K+ or Na+):proton (H+) antiporter-1
627	 31.72	0	705410..706339	-	309	161508893	-	USA300HOU_0651	-	ABC transporter ATP-binding protein
628	 32.14	0	706336..707172	-	278	161508894	-	USA300HOU_0652	-	ABC transporter ATP-binding protein
629	 33.47	0	707166..707909	-	247	161508895	-	USA300HOU_0653	-	ABC transporter ATP-binding protein
630	 30.39	0	708031..708675	+	214	161508896	-	USA300HOU_0654	-	metal-dependent transcriptional regulator
631	 30.81	0	708755..709507	-	250	161508897	-	USA300HOU_0655	-	hypothetical protein
632	 33.86	0	709743..710507	+	254	161508898	tagA	USA300HOU_0656	-	teichoic acid biosynthesis protein
633	 33.84	0	710568..711362	-	264	161508899	tagH	USA300HOU_0657	-	teichoic acids export protein ATP-binding subunit
634	 31.18	0	711688..712521	+	277	161508900	tagG	USA300HOU_0658	-	teichoic acid ABC transporter ATP-binding/membrane protein
635	 32.52	0	712620..713723	+	367	161508901	tagB3	USA300HOU_0659	-	teichoic acid biosynthesis protein B
636	 32.20	0	713720..714781	+	353	161508902	tagX	USA300HOU_0660	-	teichoic acid biosynthesis protein X
637	 32.33	0	714844..715242	+	132	161508903	tagD	USA300HOU_0661	-	glycerol-3-phosphate cytidylyltransferase
638	 34.41	0	715359..716654	-	431	161508904	pbp4	USA300HOU_0662	-	penicillin-binding protein 4
639	 33.16	0	717075..718802	+	575	161508905	-	USA300HOU_0663	-	ABC transporter ATP-binding protein
640	 23.46	-2	718873..718953	+	26	161508906	-	USA300HOU_0664	-	hypothetical protein
641	 34.23	0	719161..720390	+	409	161508907	nupC2	USA300HOU_0665	-	CNT family concentrative nucleoside transporter
642	 23.66	-2	720645..720737	+	30	161508908	-	USA300HOU_0666	-	hypothetical protein
643	 34.05	0	720915..721748	+	277	161508909	-	USA300HOU_0667	-	hypothetical protein
644	 35.09	0	722030..722827	+	265	161508910	fhuC	USA300HOU_0668	-	iron (Fe3+) ABC transporter ATP-binding protein
645	 35.92	0	722863..723867	+	334	161508911	fhuB	USA300HOU_0669	-	iron (Fe3+) ABC transporter membrane protein
646	 35.50	0	723864..724880	+	338	161508912	fhuG	USA300HOU_0670	-	iron (Fe3+) ABC transporter membrane protein
647	 35.71	0	725114..726082	+	322	161508913	-	USA300HOU_0671	-	glycerone kinase
648	 35.38	0	726124..726708	+	194	161508914	-	USA300HOU_0672	-	glycerone kinase
649	 34.71	0	726701..727063	+	120	161508915	-	USA300HOU_0673	-	hypothetical protein
650	 32.53	0	727179..727676	+	165	161508916	-	USA300HOU_0674	-	hypothetical protein
651	 32.21	0	728219..729199	+	326	161508917	-	USA300HOU_0675	-	hypothetical protein
652	 31.03	0	729350..730393	+	347	161508918	-	USA300HOU_0676	-	peptidase
653	 27.97	-1	730722..731150	+	142	161508919	-	USA300HOU_0677	-	hypothetical protein
654	 34.91	0	731359..731865	-	168	161508920	-	USA300HOU_0678	-	hypothetical protein
655	 31.49	0	731978..732901	+	307	161508921	-	USA300HOU_0679	-	hypothetical protein
656	 31.11	0	732917..733591	+	224	161508922	-	USA300HOU_0680	-	response regulator
657	 30.26	0	733584..734624	+	346	161508923	-	USA300HOU_0681	-	sensor histidine kinase
658	 31.50	0	734768..735529	+	253	161508924	vraF	USA300HOU_0682	-	ABC transporter ATP-binding protein
659	 28.68	-1	735519..737408	+	629	161508925	vraE	USA300HOU_0683	-	ABC transporter ATP-binding protein
660	 28.16	-1	738133..738750	+	205	161508926	-	USA300HOU_0684	-	hypothetical protein
661	 37.00	+1	738766..739773	+	335	161508927	-	USA300HOU_0685	-	inorganic phosphate transporter
662	 37.97	+1	740361..741158	-	265	161508928	-	USA300HOU_0686	-	LysM domain-containing protein
663	 29.15	0	741519..742163	+	214	161508929	-	USA300HOU_0687	-	hypothetical protein
664	 24.65	-2	745089..745514	+	141	161508930	sarX	USA300HOU_0689	-	hypothetical protein
665	 36.12	0	745704..746420	+	238	161508931	-	USA300HOU_0690	-	hypothetical protein
666	 33.97	0	746420..746893	+	157	161508932	-	USA300HOU_0691	-	hypothetical protein
667	 23.33	-2	746982..747101	+	39	161508933	-	USA300HOU_0692	-	hypothetical protein
668	 29.46	0	747246..747890	+	214	161508934	-	USA300HOU_0693	-	hypothetical protein
669	 32.06	0	748006..748872	+	288	161508935	-	USA300HOU_0694	-	LysR family transcriptional regulator
670	 39.58	+1	748932..749027	+	31	161508936	-	USA300HOU_0695	-	hypothetical protein
671	 32.35	0	749073..750293	+	406	161508937	-	USA300HOU_0696	-	major facilitator superfamily sugar:cation symporter
672	 30.27	0	750290..750778	+	162	161508938	-	USA300HOU_0697	-	hypothetical protein
673	 27.97	-1	750877..751566	-	229	161508939	-	USA300HOU_0698	-	hypothetical protein
674	 29.28	0	751693..752136	+	147	161508940	-	USA300HOU_0699	-	GNAT family acetyltransferase
675	 29.29	0	752203..752598	+	131	161508941	-	USA300HOU_0700	-	hypothetical protein
676	 32.00	0	752736..753035	+	99	161508942	-	USA300HOU_0701	-	hypothetical protein
677	 33.70	0	753115..753657	+	180	161508943	-	USA300HOU_0702	-	GNAT family acetyltransferase
678	 36.33	0	753753..754319	-	188	161508944	-	USA300HOU_0703	-	hypothetical protein
679	 33.77	0	754321..754779	-	152	161508945	-	USA300HOU_0704	-	hypothetical protein
680	 30.70	0	754782..755465	-	227	161508946	-	USA300HOU_0705	-	hypothetical protein
681	 33.33	0	755637..756512	-	291	161508947	bacA	USA300HOU_0706	-	undecaprenyl pyrophosphate phosphatase
682	 32.35	0	756725..758356	+	543	161508948	-	USA300HOU_0707	-	ABC transporter ATP-binding protein
683	 32.44	0	758353..760026	+	557	161508949	-	USA300HOU_0708	-	ABC transporter ATP-binding protein
684	 33.11	0	760153..760596	-	147	161508950	-	USA300HOU_0709	-	MarR family transcriptional regulator
685	 31.07	0	760823..761749	+	308	161508951	cobW2	USA300HOU_0710	-	cobalamin (vitamin B12) biosynthesis protein
686	 33.66	0	761852..762760	+	302	161508952	-	USA300HOU_0711	-	aldo/keto reductase
687	 27.08	-1	762795..763082	+	95	161508953	-	USA300HOU_0712	-	hypothetical protein
688	 35.52	0	763365..764918	+	517	161508954	-	USA300HOU_0713	-	DASS family divalent anion:sodium (Na+) symporter
689	 33.92	0	765004..766377	+	457	161508955	phrB	USA300HOU_0714	-	deoxyribodipyrimidine photo-lyase
690	 30.53	0	766532..766816	-	94	161508956	-	USA300HOU_0715	-	hypothetical protein
691	 29.45	0	766813..767430	-	205	161508957	-	USA300HOU_0716	-	hypothetical protein
692	 34.52	0	767616..768038	-	140	161508958	-	USA300HOU_0717	-	hypothetical protein
693	 33.42	0	768247..769413	+	388	161508959	norA	USA300HOU_0718	-	major facilitator transporter
694	 27.59	-1	769706..770158	+	150	161508960	-	USA300HOU_0719	-	hypothetical protein
695	 35.82	0	770332..770814	+	160	161508961	-	USA300HOU_0720	-	transcriptional regulator
696	 31.89	0	771067..771828	+	253	161508962	-	USA300HOU_0721	-	DeoR family transcriptional regulator
697	 36.92	+1	771825..772745	+	306	161508963	fruK	USA300HOU_0722	-	1-phosphofructokinase
698	 37.72	+1	772751..774709	+	652	161508964	fruA	USA300HOU_0723	-	PTS family fructose/mannitol (fru) porter component IIABC
699	 35.96	0	775017..776198	+	393	161508965	nagA	USA300HOU_0724	-	N-acetylglucosamine-6-phosphate deacetylase
700	 32.30	0	776419..777768	+	449	161508966	-	USA300HOU_0725	-	CBS domain-containing protein
701	 31.79	0	777990..778829	+	279	161508967	-	USA300HOU_0726	-	dehydrogenase
702	 31.30	0	778961..779944	+	327	161508968	-	USA300HOU_0727	-	glycosyltransferase
703	 30.49	0	780016..781071	-	351	161508969	saeS	USA300HOU_0728	-	sensor histidine kinase SaeS
704	 32.75	0	781071..781757	-	228	161508970	saeR	USA300HOU_0729	-	response regulator SaeR
705	 33.97	0	781732..782205	-	157	161508971	-	USA300HOU_0730	-	hypothetical protein
706	 31.07	0	782547..782987	-	146	161508972	-	USA300HOU_0731	-	hypothetical protein
707	 25.98	-1	783267..783851	-	194	161508973	-	USA300HOU_0732	-	hypothetical protein
708	 36.13	0	783950..784663	-	237	161508974	exsD	USA300HOU_0733	-	organic radical-activating protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.