IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
543	 33.73	0	628597..629355	+	252	161508809	nagB	USA300HOU_0563	-	glucosamine-6-phosphate deaminase
544	 34.60	0	629432..630064	+	210	161508810	-	USA300HOU_0564	-	3-hexulose-6-phosphate synthase
545	 36.61	+1	630066..630614	+	182	161508811	-	USA300HOU_0565	-	glucose-6-phosphate isomerase
546	 34.88	0	630727..631374	+	215	161508812	-	USA300HOU_0566	-	phosphatase
547	 34.33	0	631876..633276	+	466	161508813	proP	USA300HOU_0567	-	major facilitator superfamily proline/betaine:cation symporter
548	 32.46	0	633820..635196	+	458	161508814	vraA	USA300HOU_0568	-	long-chain-fatty-acid--CoA ligase
549	 38.25	+1	635198..636337	+	379	161508815	vraB	USA300HOU_0569	-	acetyl-CoA C-acetyltransferase
550	 31.97	0	636312..636677	+	121	161508816	-	USA300HOU_0570	-	hypothetical protein
551	 29.63	0	636680..636949	+	89	161508817	-	USA300HOU_0571	-	hypothetical protein
552	 29.76	0	637150..637317	-	55	161508818	-	USA300HOU_0572	-	hypothetical protein
553	 37.91	+1	637824..638654	-	276	161508819	thiD	USA300HOU_0573	-	phosphomethylpyrimidine kinase
554	 35.46	0	638838..639494	+	218	161508820	ung	USA300HOU_0574	-	uracil-DNA glycosylase
555	 35.17	0	639495..639875	+	126	161508821	-	USA300HOU_0575	-	hypothetical protein
556	 33.60	0	640008..640376	+	122	161508822	-	USA300HOU_0576	-	hypothetical protein
557	 35.62	0	640497..641981	+	494	161508823	-	USA300HOU_0577	-	APC family amino acid-polyamine-organocation transporter
558	 34.88	0	642123..642575	-	150	161508824	-	USA300HOU_0578	-	hypothetical protein
559	 36.60	+1	642588..643352	-	254	161508825	-	USA300HOU_0579	-	hypothetical protein
560	 33.20	0	643901..644653	-	250	161508826	-	USA300HOU_0580	-	putative heme peroxidase
561	 36.58	+1	644821..645807	+	328	161508827	pta	USA300HOU_0581	-	phosphotransacetylase
562	 33.81	0	645810..646646	+	278	161508828	lplA2	USA300HOU_0582	-	lipoate--protein ligase A
563	 38.11	+1	647233..648153	+	306	161508829	mvaK1	USA300HOU_0583	-	mevalonate kinase
564	 36.99	+1	648158..649141	+	327	161508830	mvaD	USA300HOU_0584	-	mevalonate diphosphate decarboxylase
565	 33.43	0	649154..650230	+	358	161508831	mvaK2	USA300HOU_0585	-	phosphomevalonate kinase
566	 35.38	0	650407..650748	+	113	161508832	-	USA300HOU_0586	-	hypothetical protein
567	 35.15	0	650800..652122	-	440	161508833	-	USA300HOU_0587	-	pyridine nucleotide-disulfide reductase
568	 32.88	0	652109..652549	-	146	161508834	-	USA300HOU_0588	-	hypothetical protein
569	 24.24	-2	652530..652628	+	32	161508835	-	USA300HOU_0589	-	hypothetical protein
570	 31.37	0	652607..652708	+	33	161508836	-	USA300HOU_0590	-	hypothetical protein
571	 34.25	0	653168..654583	+	471	161508837	-	USA300HOU_0591	-	hypothetical protein
572	 24.40	-2	654587..655213	+	208	161508838	-	USA300HOU_0592	-	hypothetical protein
573	 25.39	-1	655339..655980	+	213	161508839	-	USA300HOU_0593	-	hypothetical protein
574	 28.48	-1	656068..656685	+	205	161508840	-	USA300HOU_0594	-	hypothetical protein
575	 26.67	-1	656760..657389	+	209	161508841	-	USA300HOU_0595	-	hypothetical protein
576	 25.64	-1	657446..657562	+	38	161508842	-	USA300HOU_0596	-	hypothetical protein
577	 24.48	-2	657585..658205	+	206	161508843	-	USA300HOU_0597	-	hypothetical protein
578	 25.39	-1	658336..658977	+	213	161508844	-	USA300HOU_0598	-	hypothetical protein
579	 27.16	-1	659659..659739	+	26	161508845	-	USA300HOU_0600	-	hypothetical protein
580	 26.98	-1	660106..660735	+	209	161508846	-	USA300HOU_0601	-	hypothetical protein
581	 24.27	-2	660850..661500	+	216	161508847	-	USA300HOU_0602	-	hypothetical protein
582	 26.10	-1	661537..662172	+	211	161508848	-	USA300HOU_0603	-	hypothetical protein
583	 31.30	0	662138..662383	+	81	161508849	-	USA300HOU_0604	-	hypothetical protein
584	 25.36	-1	662407..663033	+	208	161508850	-	USA300HOU_0605	-	hypothetical protein
585	 34.61	0	663303..664241	+	312	161508851	-	USA300HOU_0606	-	dehydrogenase
586	 35.38	0	664452..664988	+	178	161508852	-	USA300HOU_0607	-	hypothetical protein
587	 31.66	0	665157..665633	+	158	161508853	-	USA300HOU_0608	-	acetytransferase
588	 33.10	0	665673..666968	+	431	161508854	-	USA300HOU_0609	-	phosphohydrolase
589	 36.50	+1	668016..669026	+	336	161508855	adh	USA300HOU_0610	-	alcohol dehydrogenase
590	 26.85	-1	669101..669208	+	35	161508856	-	USA300HOU_0611	-	hypothetical protein
591	 32.17	0	669289..669717	+	142	161508857	-	USA300HOU_0612	-	hypothetical protein
592	 32.91	0	669714..671375	+	553	161508858	argS	USA300HOU_0613	-	arginyl-tRNA synthetase
593	 27.67	-1	671763..672398	+	211	161508859	-	USA300HOU_0614	-	deoxyribonuclease (pyrimidine dimer)
594	 31.87	0	672777..673664	+	295	161508860	-	USA300HOU_0615	-	iron (Fe3+) ABC transporter binding protein
595	 31.61	0	673776..674762	+	328	161508861	-	USA300HOU_0616	-	iron (Fe3+) ABC transporter membrane protein
596	 30.56	0	674817..675536	+	239	161508862	-	USA300HOU_0617	-	hydrolase
597	 32.08	0	675520..676320	+	266	161508863	-	USA300HOU_0618	-	hydrolase
598	 31.16	0	676456..676962	+	168	161508864	-	USA300HOU_0619	-	hypothetical protein
599	 26.48	-1	677097..677840	+	247	161508865	-	USA300HOU_0620	-	hypothetical protein
600	 29.91	0	678009..678797	+	262	161508866	-	USA300HOU_0621	-	hydrolase
601	 27.47	-1	679048..679422	-	124	161508867	sarA	USA300HOU_0622	-	staphylococcal accessory regulator A
602	 24.00	-2	680132..680281	-	49	161508868	-	USA300HOU_0623	-	hypothetical protein
603	 24.37	-2	682267..682623	-	118	161508869	-	USA300HOU_0626	-	hypothetical protein
604	 26.90	-1	682679..683269	-	196	161508870	-	USA300HOU_0627	-	hypothetical protein
605	 34.38	0	683276..684322	-	348	161508871	-	USA300HOU_0628	-	hypothetical protein
606	 29.44	0	684312..686159	-	615	161508872	-	USA300HOU_0629	-	hypothetical protein
607	 28.99	0	686164..687522	-	452	161508873	-	USA300HOU_0630	-	FtsK/SpoIIIE family cell division protein
608	 30.93	0	687576..690071	-	831	161508874	-	USA300HOU_0631	-	hypothetical protein
609	 24.48	-2	690106..690489	-	127	161508875	-	USA300HOU_0632	-	hypothetical protein
610	 36.40	+1	690501..690761	-	86	161508876	-	USA300HOU_0633	-	hypothetical protein
611	 26.52	-1	690766..691821	-	351	161508877	-	USA300HOU_0634	-	hypothetical protein
612	 32.97	0	691882..692973	-	363	161508878	-	USA300HOU_0635	-	replication initiation protein
613	 32.01	0	693148..693450	-	100	161508879	-	USA300HOU_0636	-	hypothetical protein
614	 30.53	0	693464..693784	-	106	161508880	-	USA300HOU_0637	-	hypothetical protein
615	 23.16	-2	693935..694219	-	94	161508881	-	USA300HOU_0638	-	hypothetical protein
616	 29.78	0	694851..695075	-	74	161508882	-	USA300HOU_0640	-	hypothetical protein
617	 32.35	0	695092..695295	-	67	161508883	-	USA300HOU_0641	-	hypothetical protein
618	 30.12	0	695454..696014	+	186	161508884	-	USA300HOU_0642	-	bacteriophage integrase
619	 32.04	0	696033..698435	+	800	161508885	mnhA1	USA300HOU_0643	-	putative monovalent cation/H+ antiporter subunit A
620	 32.39	0	698422..698847	+	141	161508886	mnhB1	USA300HOU_0644	-	putative monovalent cation/H+ antiporter subunit B
621	 30.72	0	698844..699188	+	114	161508887	mnhC1	USA300HOU_0645	-	putative monovalent cation/H+ antiporter subunit C
622	 33.33	0	699178..700674	+	498	161508888	mnhD1	USA300HOU_0646	-	putative monovalent cation/H+ antiporter subunit D
623	 26.09	-1	700675..701157	+	160	161508889	mnhE1	USA300HOU_0647	-	putative monovalent cation/H+ antiporter subunit E
624	 33.00	0	701154..701456	+	100	161508890	mnhF1	USA300HOU_0648	-	putative monovalent cation/H+ antiporter subunit F
625	 34.02	0	701431..701868	+	145	161508891	mnhG1	USA300HOU_0649	-	putative monovalent cation/H+ antiporter subunit G
626	 31.96	0	702208..704250	+	680	161508892	-	USA300HOU_0650	-	CPA1 family monovalent cation (K+ or Na+):proton (H+) antiporter-1
627	 31.72	0	705410..706339	-	309	161508893	-	USA300HOU_0651	-	ABC transporter ATP-binding protein
628	 32.14	0	706336..707172	-	278	161508894	-	USA300HOU_0652	-	ABC transporter ATP-binding protein
629	 33.47	0	707166..707909	-	247	161508895	-	USA300HOU_0653	-	ABC transporter ATP-binding protein
630	 30.39	0	708031..708675	+	214	161508896	-	USA300HOU_0654	-	metal-dependent transcriptional regulator
631	 30.81	0	708755..709507	-	250	161508897	-	USA300HOU_0655	-	hypothetical protein
632	 33.86	0	709743..710507	+	254	161508898	tagA	USA300HOU_0656	-	teichoic acid biosynthesis protein
633	 33.84	0	710568..711362	-	264	161508899	tagH	USA300HOU_0657	-	teichoic acids export protein ATP-binding subunit
634	 31.18	0	711688..712521	+	277	161508900	tagG	USA300HOU_0658	-	teichoic acid ABC transporter ATP-binding/membrane protein
635	 32.52	0	712620..713723	+	367	161508901	tagB3	USA300HOU_0659	-	teichoic acid biosynthesis protein B
636	 32.20	0	713720..714781	+	353	161508902	tagX	USA300HOU_0660	-	teichoic acid biosynthesis protein X
637	 32.33	0	714844..715242	+	132	161508903	tagD	USA300HOU_0661	-	glycerol-3-phosphate cytidylyltransferase
638	 34.41	0	715359..716654	-	431	161508904	pbp4	USA300HOU_0662	-	penicillin-binding protein 4
639	 33.16	0	717075..718802	+	575	161508905	-	USA300HOU_0663	-	ABC transporter ATP-binding protein
640	 23.46	-2	718873..718953	+	26	161508906	-	USA300HOU_0664	-	hypothetical protein
641	 34.23	0	719161..720390	+	409	161508907	nupC2	USA300HOU_0665	-	CNT family concentrative nucleoside transporter
642	 23.66	-2	720645..720737	+	30	161508908	-	USA300HOU_0666	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.