IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
466	 29.29	0	523309..523407	+	32	161508732	-	USA300HOU_0486	-	hypothetical protein
467	 33.61	0	523590..524315	+	241	161508733	-	USA300HOU_0487	-	hypothetical protein
468	 33.73	0	524308..524556	+	82	161508734	-	USA300HOU_0488	-	hypothetical protein
469	 35.12	0	524558..525397	+	279	161508735	-	USA300HOU_0489	-	tetrapyrrole (corrin/porphyrin) methyltransferase
470	 33.99	0	525682..527655	+	657	161508736	metS	USA300HOU_0490	-	methionyl-tRNA synthetase
471	 36.56	+1	527686..528459	+	257	161508737	-	USA300HOU_0491	-	TatD family deoxyribonuclease
472	 34.82	0	528626..529162	+	178	161508738	-	USA300HOU_0492	-	hypothetical protein
473	 32.89	0	529173..530066	+	297	161508739	ksgA	USA300HOU_0493	-	dimethyladenosine transferase
474	 32.20	0	530166..530429	+	87	161508740	-	USA300HOU_0494	-	hypothetical protein
475	 37.61	+1	536154..536807	+	217	161508741	rplY	USA300HOU_0495	-	50S ribosomal protein L25/general stress protein Ctc
476	 32.98	0	537118..537690	+	190	161508742	pth	USA300HOU_0496	-	peptidyl-tRNA hydrolase
477	 34.25	0	537690..541196	+	1168	161508743	mfd	USA300HOU_0497	-	transcription-repair coupling factor
478	 32.87	0	541186..542712	+	508	161508744	-	USA300HOU_0498	-	MOP superfamily PST family polysaccharide transporter
479	 35.09	0	542712..543905	+	397	161508745	-	USA300HOU_0499	-	tetrapyrrole methyltransferase
480	 34.47	0	543902..544165	+	87	161508746	-	USA300HOU_0500	-	RNA-binding S4 domain-containing heat shock protein
481	 33.33	0	544183..544575	+	130	161508747	-	USA300HOU_0501	-	septum formation initiator
482	 34.33	0	544680..545081	+	133	161508748	-	USA300HOU_0502	-	hypothetical protein
483	 30.79	0	545261..546556	+	431	161508749	-	USA300HOU_0503	-	hypothetical protein
484	 30.65	0	546543..547100	+	185	161508750	hpt	USA300HOU_0504	-	hypoxanthine phosphoribosyltransferase
485	 35.58	0	547357..549450	+	697	161508751	ftsH	USA300HOU_0505	-	cell division protein FtsH
486	 36.62	+1	549679..550560	+	293	161508752	-	USA300HOU_0506	-	heat shock protein Hsp33
487	 38.05	+1	550739..551671	+	310	161508753	cysK	USA300HOU_0507	-	cysteine synthase
488	 36.19	0	551887..552690	+	267	161508754	sul	USA300HOU_0508	-	dihydropteroate synthase
489	 35.75	0	552662..553033	+	123	161508755	folB	USA300HOU_0509	-	dihydroneopterin aldolase
490	 29.43	0	562589..563971	-	460	161508756	-	USA300HOU_0510	-	GntR family transcriptional regulator
491	 38.74	+1	564075..564962	+	295	161508757	-	USA300HOU_0511	-	pyridoxine biosynthesis protein
492	 33.51	0	564966..565526	+	186	161508758	-	USA300HOU_0512	-	glutamine amidotransferase subunit PdxT
493	 24.84	-2	565535..565687	+	50	161508759	-	USA300HOU_0513	-	hypothetical protein
494	 33.42	0	565734..566948	-	404	161508760	nupC1	USA300HOU_0514	-	CNT family concentrative nucleoside transporter
495	 31.17	0	567106..567567	+	153	161508761	ctsR	USA300HOU_0515	-	CtsR family transcriptional regulator
496	 33.69	0	567586..568152	+	188	161508762	-	USA300HOU_0516	-	hypothetical protein
497	 32.64	0	568139..569149	+	336	161508763	-	USA300HOU_0517	-	ATP:guanido phosphotransferase
498	 34.27	0	569163..571619	+	818	161508764	-	USA300HOU_0518	-	AAA family ATP-binding protein
499	 36.78	+1	572104..573468	+	454	161508765	radA	USA300HOU_0519	-	DNA repair protein RadA
500	 30.45	0	573493..574566	+	357	161508766	-	USA300HOU_0520	-	hypothetical protein
501	 34.30	0	575123..576577	+	484	161508767	gltX	USA300HOU_0521	-	glutamyl-tRNA synthetase
502	 34.97	0	576916..577647	+	243	161508768	cysE	USA300HOU_0522	-	serine O-acetyltransferase
503	 33.12	0	577601..579031	+	476	161508769	cysS	USA300HOU_0523	-	cysteinyl-tRNA synthetase
504	 32.10	0	579024..579428	+	134	161508770	-	USA300HOU_0524	-	hypothetical protein
505	 35.21	0	579436..580182	+	248	161508771	-	USA300HOU_0525	-	RNA methyltransferase
506	 32.57	0	580182..580706	+	174	161508772	-	USA300HOU_0526	-	hypothetical protein
507	 27.72	-1	580787..581356	+	189	161508773	-	USA300HOU_0527	-	hypothetical protein
508	 32.64	0	581471..581614	+	47	161508774	rpmG1	USA300HOU_0528	-	50S ribosomal protein L33
509	 28.96	0	581670..581852	+	60	161508775	secE	USA300HOU_0529	-	preprotein translocase subunit SecE
510	 35.52	0	581865..582413	+	182	161508776	nusG	USA300HOU_0530	-	transcription antitermination protein
511	 38.77	+1	582594..583016	+	140	161508777	rplK	USA300HOU_0531	-	50S ribosomal protein L11
512	 36.36	+1	583224..583916	+	230	161508778	rplA	USA300HOU_0532	-	50S ribosomal protein L1
513	 37.33	+1	584188..584688	+	166	161508779	rplJ	USA300HOU_0533	-	50S ribosomal protein L10
514	 35.77	0	584731..585099	+	122	161508780	rplL1	USA300HOU_0534	-	50S ribosomal protein L7/L12
515	 33.83	0	585274..585882	+	202	161508781	-	USA300HOU_0535	-	hypothetical protein
516	 37.56	+1	586097..589648	+	1183	161508782	rpoB	USA300HOU_0536	-	DNA-directed RNA polymerase subunit beta
517	 36.12	0	589785..593408	+	1207	161508783	rpoC	USA300HOU_0537	-	DNA-directed RNA polymerase subunit beta'
518	 31.41	0	593488..593799	+	103	161508784	-	USA300HOU_0538	-	putative ribosomal protein L7Ae-like
519	 37.44	+1	593897..594310	+	137	161508785	rpsL	USA300HOU_0539	-	30S ribosomal protein S12
520	 38.64	+1	594376..594846	+	156	161508786	rpsG	USA300HOU_0540	-	30S ribosomal protein S7
521	 40.68	+2	597267..598451	+	394	161508787	tufA	USA300HOU_0541	-	elongation factor Tu
522	 35.03	0	598733..599908	-	391	161508788	-	USA300HOU_0542	-	M20D subfamily peptidase
523	 33.84	0	600079..601266	+	395	161508789	kbl	USA300HOU_0543	-	2-amino-3-ketobutyrate coenzyme A ligase
524	 34.47	0	601532..602410	+	292	161508790	-	USA300HOU_0544	-	chaperone protein HchA
525	 33.03	0	602567..604207	+	546	161508791	araB	USA300HOU_0545	-	ribulokinase
526	 35.40	0	604421..605386	+	321	161508792	-	USA300HOU_0546	-	UDP-glucose 4-epimerase
527	 35.00	0	605721..606797	+	358	161508793	ilvE	USA300HOU_0547	-	branched-chain amino acid aminotransferase
528	 24.71	-2	606770..606943	+	57	161508794	-	USA300HOU_0548	-	hypothetical protein
529	 34.80	0	607047..607730	+	227	161508795	-	USA300HOU_0549	-	hydrolase
530	 32.13	0	607846..608508	-	220	161508796	-	USA300HOU_0550	-	deoxynucleoside kinase
531	 26.70	-1	608501..609163	-	220	161508797	-	USA300HOU_0551	-	deoxynucleoside kinase
532	 36.31	0	609185..609655	+	156	161508798	-	USA300HOU_0552	-	deaminase
533	 33.56	0	609802..610671	+	289	161508799	-	USA300HOU_0553	-	hydrolase
534	 30.86	0	610692..611258	+	188	161508800	-	USA300HOU_0554	-	hypothetical protein
535	 34.85	0	611689..614532	+	947	161508801	sdrC	USA300HOU_0555	-	Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrC
536	 34.06	0	614899..619044	+	1381	161508802	sdrD	USA300HOU_0556	-	Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrD
537	 34.95	0	619438..622902	+	1154	161508803	sdrE	USA300HOU_0557	-	Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE
538	 30.07	0	623021..624493	+	490	161508804	-	USA300HOU_0558	-	glycosyltransferase
539	 30.52	0	624617..626107	-	496	161508805	-	USA300HOU_0559	-	glycosyltransferase
540	 34.81	0	626389..627267	-	292	161508806	-	USA300HOU_0560	-	putative GTP cyclohydrolase
541	 35.89	0	627280..627945	-	221	161508807	-	USA300HOU_0561	-	hypothetical protein
542	 35.50	0	627959..628327	-	122	161508808	-	USA300HOU_0562	-	hypothetical protein
543	 33.73	0	628597..629355	+	252	161508809	nagB	USA300HOU_0563	-	glucosamine-6-phosphate deaminase
544	 34.60	0	629432..630064	+	210	161508810	-	USA300HOU_0564	-	3-hexulose-6-phosphate synthase
545	 36.61	+1	630066..630614	+	182	161508811	-	USA300HOU_0565	-	glucose-6-phosphate isomerase
546	 34.88	0	630727..631374	+	215	161508812	-	USA300HOU_0566	-	phosphatase
547	 34.33	0	631876..633276	+	466	161508813	proP	USA300HOU_0567	-	major facilitator superfamily proline/betaine:cation symporter
548	 32.46	0	633820..635196	+	458	161508814	vraA	USA300HOU_0568	-	long-chain-fatty-acid--CoA ligase
549	 38.25	+1	635198..636337	+	379	161508815	vraB	USA300HOU_0569	-	acetyl-CoA C-acetyltransferase
550	 31.97	0	636312..636677	+	121	161508816	-	USA300HOU_0570	-	hypothetical protein
551	 29.63	0	636680..636949	+	89	161508817	-	USA300HOU_0571	-	hypothetical protein
552	 29.76	0	637150..637317	-	55	161508818	-	USA300HOU_0572	-	hypothetical protein
553	 37.91	+1	637824..638654	-	276	161508819	thiD	USA300HOU_0573	-	phosphomethylpyrimidine kinase
554	 35.46	0	638838..639494	+	218	161508820	ung	USA300HOU_0574	-	uracil-DNA glycosylase
555	 35.17	0	639495..639875	+	126	161508821	-	USA300HOU_0575	-	hypothetical protein
556	 33.60	0	640008..640376	+	122	161508822	-	USA300HOU_0576	-	hypothetical protein
557	 35.62	0	640497..641981	+	494	161508823	-	USA300HOU_0577	-	APC family amino acid-polyamine-organocation transporter
558	 34.88	0	642123..642575	-	150	161508824	-	USA300HOU_0578	-	hypothetical protein
559	 36.60	+1	642588..643352	-	254	161508825	-	USA300HOU_0579	-	hypothetical protein
560	 33.20	0	643901..644653	-	250	161508826	-	USA300HOU_0580	-	putative heme peroxidase
561	 36.58	+1	644821..645807	+	328	161508827	pta	USA300HOU_0581	-	phosphotransacetylase
562	 33.81	0	645810..646646	+	278	161508828	lplA2	USA300HOU_0582	-	lipoate--protein ligase A
563	 38.11	+1	647233..648153	+	306	161508829	mvaK1	USA300HOU_0583	-	mevalonate kinase
564	 36.99	+1	648158..649141	+	327	161508830	mvaD	USA300HOU_0584	-	mevalonate diphosphate decarboxylase
565	 33.43	0	649154..650230	+	358	161508831	mvaK2	USA300HOU_0585	-	phosphomevalonate kinase
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.