IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
428	 30.32	0	472037..473365	+	442	161508694	-	USA300HOU_0448	-	hypothetical protein
429	 28.09	-1	473362..473685	+	107	161508695	-	USA300HOU_0449	-	hypothetical protein
430	 33.02	0	473704..474018	+	104	161508696	-	USA300HOU_0450	-	hypothetical protein
431	 30.77	0	474308..474502	-	64	161508697	-	USA300HOU_0451	-	hypothetical protein
432	 37.07	+1	474687..475889	+	400	161508698	cobW1	USA300HOU_0452	-	cobalamin (vitamin B12) biosynthesis protein
433	 32.64	0	475992..476135	-	47	161508699	-	USA300HOU_0453	-	hypothetical protein
434	 39.53	+1	476158..476286	+	42	161508700	-	USA300HOU_0454	-	hypothetical protein
435	 28.79	-1	476794..476859	-	21	161508701	-	USA300HOU_0455	-	hypothetical protein
436	 33.33	0	476891..476956	-	21	161508702	-	USA300HOU_0456	-	hypothetical protein
437	 37.31	+1	477477..478961	+	494	161508703	-	USA300HOU_0457	-	NADH dehydrogenase subunit 5
438	 38.73	+1	478974..481679	+	901	161508704	-	USA300HOU_0458	-	hypothetical protein
439	 33.06	0	481841..482203	+	120	161508705	-	USA300HOU_0459	-	hypothetical protein
440	 26.38	-1	482432..482848	-	138	161508706	-	USA300HOU_0460	-	hypothetical protein
441	 34.52	0	482886..483560	+	224	161508707	-	USA300HOU_0461	-	hypothetical protein
442	 33.88	0	483597..484331	+	244	161508708	-	USA300HOU_0462	-	peptidase
443	 43.86	+2	484509..484622	+	37	161508709	-	USA300HOU_0463	-	hypothetical protein
444	 32.86	0	490400..491242	+	280	161508710	-	USA300HOU_0464	-	ABC transporter ATP-binding protein
445	 36.52	+1	491574..492578	+	334	161508711	-	USA300HOU_0465	-	LysM family autolysin
446	 32.59	0	492763..493032	-	89	161508712	-	USA300HOU_0466	-	hypothetical protein
447	 34.81	0	493172..493576	+	134	161508713	-	USA300HOU_0467	-	hypothetical protein
448	 36.21	0	493566..494051	+	161	161508714	-	USA300HOU_0468	-	GNAT family acetyltransferase
449	 32.69	0	494220..495002	-	260	161508715	-	USA300HOU_0469	-	hypothetical protein
450	 33.33	0	494999..496117	-	372	161508716	-	USA300HOU_0470	-	hypothetical protein
451	 32.99	0	496232..497116	-	294	161508717	gltC	USA300HOU_0471	-	glutamate synthase operon transcriptional regulator
452	 37.62	+1	497297..501796	+	1499	161508718	gltB1	USA300HOU_0472	-	glutamate synthase (NADPH), large subunit
453	 38.32	+1	501814..503277	+	487	161508719	gltD	USA300HOU_0473	-	glutamate synthase subunit beta
454	 37.54	+1	504109..505536	+	475	161508720	treP	USA300HOU_0474	-	PTS family trehalose (tre) porter component IIBC
455	 36.20	0	505600..507240	+	546	161508721	amyA	USA300HOU_0475	-	alpha, alpha-phosphotrehalase
456	 33.14	0	508632..509156	+	174	161508722	-	USA300HOU_0476	-	GNAT family acetyltransferase
457	 36.20	0	509249..510922	+	557	161508723	dnaZX	USA300HOU_0477	-	DNA-directed DNA polymerase III gamma and tau subunits
458	 39.94	+1	511012..511329	+	105	161508724	-	USA300HOU_0478	-	hypothetical protein
459	 36.35	0	511336..511932	+	198	161508725	recR	USA300HOU_0479	-	recombination protein RecR
460	 33.03	0	518695..520032	+	445	161508726	-	USA300HOU_0480	-	lysine decarboxylase
461	 32.70	0	520025..520651	+	208	161508727	tmk	USA300HOU_0481	-	dTMP kinase
462	 37.58	+1	520679..521008	+	109	161508728	-	USA300HOU_0482	-	hypothetical protein
463	 30.53	0	521222..522148	+	308	161508729	holB	USA300HOU_0483	-	DNA-directed DNA polymerase III delta' subunit
464	 32.71	0	522149..522952	+	267	161508730	-	USA300HOU_0484	-	hypothetical protein
465	 32.70	0	522999..523316	+	105	161508731	-	USA300HOU_0485	-	DNA replication intiation control protein YabA
466	 29.29	0	523309..523407	+	32	161508732	-	USA300HOU_0486	-	hypothetical protein
467	 33.61	0	523590..524315	+	241	161508733	-	USA300HOU_0487	-	hypothetical protein
468	 33.73	0	524308..524556	+	82	161508734	-	USA300HOU_0488	-	hypothetical protein
469	 35.12	0	524558..525397	+	279	161508735	-	USA300HOU_0489	-	tetrapyrrole (corrin/porphyrin) methyltransferase
470	 33.99	0	525682..527655	+	657	161508736	metS	USA300HOU_0490	-	methionyl-tRNA synthetase
471	 36.56	+1	527686..528459	+	257	161508737	-	USA300HOU_0491	-	TatD family deoxyribonuclease
472	 34.82	0	528626..529162	+	178	161508738	-	USA300HOU_0492	-	hypothetical protein
473	 32.89	0	529173..530066	+	297	161508739	ksgA	USA300HOU_0493	-	dimethyladenosine transferase
474	 32.20	0	530166..530429	+	87	161508740	-	USA300HOU_0494	-	hypothetical protein
475	 37.61	+1	536154..536807	+	217	161508741	rplY	USA300HOU_0495	-	50S ribosomal protein L25/general stress protein Ctc
476	 32.98	0	537118..537690	+	190	161508742	pth	USA300HOU_0496	-	peptidyl-tRNA hydrolase
477	 34.25	0	537690..541196	+	1168	161508743	mfd	USA300HOU_0497	-	transcription-repair coupling factor
478	 32.87	0	541186..542712	+	508	161508744	-	USA300HOU_0498	-	MOP superfamily PST family polysaccharide transporter
479	 35.09	0	542712..543905	+	397	161508745	-	USA300HOU_0499	-	tetrapyrrole methyltransferase
480	 34.47	0	543902..544165	+	87	161508746	-	USA300HOU_0500	-	RNA-binding S4 domain-containing heat shock protein
481	 33.33	0	544183..544575	+	130	161508747	-	USA300HOU_0501	-	septum formation initiator
482	 34.33	0	544680..545081	+	133	161508748	-	USA300HOU_0502	-	hypothetical protein
483	 30.79	0	545261..546556	+	431	161508749	-	USA300HOU_0503	-	hypothetical protein
484	 30.65	0	546543..547100	+	185	161508750	hpt	USA300HOU_0504	-	hypoxanthine phosphoribosyltransferase
485	 35.58	0	547357..549450	+	697	161508751	ftsH	USA300HOU_0505	-	cell division protein FtsH
486	 36.62	+1	549679..550560	+	293	161508752	-	USA300HOU_0506	-	heat shock protein Hsp33
487	 38.05	+1	550739..551671	+	310	161508753	cysK	USA300HOU_0507	-	cysteine synthase
488	 36.19	0	551887..552690	+	267	161508754	sul	USA300HOU_0508	-	dihydropteroate synthase
489	 35.75	0	552662..553033	+	123	161508755	folB	USA300HOU_0509	-	dihydroneopterin aldolase
490	 29.43	0	562589..563971	-	460	161508756	-	USA300HOU_0510	-	GntR family transcriptional regulator
491	 38.74	+1	564075..564962	+	295	161508757	-	USA300HOU_0511	-	pyridoxine biosynthesis protein
492	 33.51	0	564966..565526	+	186	161508758	-	USA300HOU_0512	-	glutamine amidotransferase subunit PdxT
493	 24.84	-2	565535..565687	+	50	161508759	-	USA300HOU_0513	-	hypothetical protein
494	 33.42	0	565734..566948	-	404	161508760	nupC1	USA300HOU_0514	-	CNT family concentrative nucleoside transporter
495	 31.17	0	567106..567567	+	153	161508761	ctsR	USA300HOU_0515	-	CtsR family transcriptional regulator
496	 33.69	0	567586..568152	+	188	161508762	-	USA300HOU_0516	-	hypothetical protein
497	 32.64	0	568139..569149	+	336	161508763	-	USA300HOU_0517	-	ATP:guanido phosphotransferase
498	 34.27	0	569163..571619	+	818	161508764	-	USA300HOU_0518	-	AAA family ATP-binding protein
499	 36.78	+1	572104..573468	+	454	161508765	radA	USA300HOU_0519	-	DNA repair protein RadA
500	 30.45	0	573493..574566	+	357	161508766	-	USA300HOU_0520	-	hypothetical protein
501	 34.30	0	575123..576577	+	484	161508767	gltX	USA300HOU_0521	-	glutamyl-tRNA synthetase
502	 34.97	0	576916..577647	+	243	161508768	cysE	USA300HOU_0522	-	serine O-acetyltransferase
503	 33.12	0	577601..579031	+	476	161508769	cysS	USA300HOU_0523	-	cysteinyl-tRNA synthetase
504	 32.10	0	579024..579428	+	134	161508770	-	USA300HOU_0524	-	hypothetical protein
505	 35.21	0	579436..580182	+	248	161508771	-	USA300HOU_0525	-	RNA methyltransferase
506	 32.57	0	580182..580706	+	174	161508772	-	USA300HOU_0526	-	hypothetical protein
507	 27.72	-1	580787..581356	+	189	161508773	-	USA300HOU_0527	-	hypothetical protein
508	 32.64	0	581471..581614	+	47	161508774	rpmG1	USA300HOU_0528	-	50S ribosomal protein L33
509	 28.96	0	581670..581852	+	60	161508775	secE	USA300HOU_0529	-	preprotein translocase subunit SecE
510	 35.52	0	581865..582413	+	182	161508776	nusG	USA300HOU_0530	-	transcription antitermination protein
511	 38.77	+1	582594..583016	+	140	161508777	rplK	USA300HOU_0531	-	50S ribosomal protein L11
512	 36.36	+1	583224..583916	+	230	161508778	rplA	USA300HOU_0532	-	50S ribosomal protein L1
513	 37.33	+1	584188..584688	+	166	161508779	rplJ	USA300HOU_0533	-	50S ribosomal protein L10
514	 35.77	0	584731..585099	+	122	161508780	rplL1	USA300HOU_0534	-	50S ribosomal protein L7/L12
515	 33.83	0	585274..585882	+	202	161508781	-	USA300HOU_0535	-	hypothetical protein
516	 37.56	+1	586097..589648	+	1183	161508782	rpoB	USA300HOU_0536	-	DNA-directed RNA polymerase subunit beta
517	 36.12	0	589785..593408	+	1207	161508783	rpoC	USA300HOU_0537	-	DNA-directed RNA polymerase subunit beta'
518	 31.41	0	593488..593799	+	103	161508784	-	USA300HOU_0538	-	putative ribosomal protein L7Ae-like
519	 37.44	+1	593897..594310	+	137	161508785	rpsL	USA300HOU_0539	-	30S ribosomal protein S12
520	 38.64	+1	594376..594846	+	156	161508786	rpsG	USA300HOU_0540	-	30S ribosomal protein S7
521	 40.68	+2	597267..598451	+	394	161508787	tufA	USA300HOU_0541	-	elongation factor Tu
522	 35.03	0	598733..599908	-	391	161508788	-	USA300HOU_0542	-	M20D subfamily peptidase
523	 33.84	0	600079..601266	+	395	161508789	kbl	USA300HOU_0543	-	2-amino-3-ketobutyrate coenzyme A ligase
524	 34.47	0	601532..602410	+	292	161508790	-	USA300HOU_0544	-	chaperone protein HchA
525	 33.03	0	602567..604207	+	546	161508791	araB	USA300HOU_0545	-	ribulokinase
526	 35.40	0	604421..605386	+	321	161508792	-	USA300HOU_0546	-	UDP-glucose 4-epimerase
527	 35.00	0	605721..606797	+	358	161508793	ilvE	USA300HOU_0547	-	branched-chain amino acid aminotransferase
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.