IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
384	 30.30	0	426696..427322	-	208	161508650	-	USA300HOU_0401	-	hypothetical protein
385	 31.29	0	427395..427688	-	97	161508651	-	USA300HOU_0402	-	hypothetical protein
386	 37.93	+1	427767..429290	-	507	161508652	ahpF	USA300HOU_0403	-	alkyl hydroperoxide reductase subunit F
387	 37.19	+1	429306..429875	-	189	161508653	ahpC1	USA300HOU_0404	-	alkyl hydroperoxide reductase subunit C
388	 37.55	+1	430316..431122	+	268	161508654	-	USA300HOU_0405	-	FMN reductase
389	 39.16	+1	431203..432591	-	462	161508655	-	USA300HOU_0406	-	DAACS family dicarboxylate/amino acid:sodium or proton symporter
390	 37.72	+1	433568..434524	-	318	161508656	-	USA300HOU_0408	-	hypothetical protein
391	 30.62	0	434642..435304	-	220	161508657	-	USA300HOU_0409	-	hypothetical protein
392	 33.09	0	435447..435854	-	135	161508658	-	USA300HOU_0410	-	hypothetical protein
393	 35.75	0	436367..436945	+	192	161508659	xprT	USA300HOU_0411	-	xanthine phosphoribosyltransferase
394	 35.78	0	436945..438213	+	422	161508660	pbuX	USA300HOU_0412	-	NCS2 family nucleobase:cation symporter-2
395	 37.42	+1	438251..439717	+	488	161508661	guaB	USA300HOU_0413	-	IMP dehydrogenase
396	 37.16	+1	439742..441283	+	513	161508662	guaA	USA300HOU_0414	-	bifunctional GMP synthase/glutamine amidotransferase protein
397	 27.93	-1	441396..441932	-	178	161508663	-	USA300HOU_0415	-	hypothetical protein
398	 28.09	-1	442325..443029	-	234	161508664	-	USA300HOU_0416	-	hypothetical protein
399	 25.27	-1	443428..443700	-	90	161508665	-	USA300HOU_0417	-	transposase
400	 26.80	-1	443961..444113	-	50	161508666	-	USA300HOU_0419	-	hypothetical protein
401	 32.78	0	444637..444996	-	119	161508667	-	USA300HOU_0420	-	hypothetical protein
402	 35.70	0	445015..445860	-	281	161508668	-	USA300HOU_0421	-	hypothetical protein
403	 31.28	0	446332..447012	+	226	161508669	set3	USA300HOU_0422	-	superantigen-like protein
404	 28.59	-1	447298..447993	+	231	161508670	set1	USA300HOU_0423	-	superantigen-like protein
405	 34.37	0	448284..449342	+	352	161508671	set18	USA300HOU_0424	-	superantigen-like protein
406	 27.54	-1	449461..449598	+	45	161508672	-	USA300HOU_0425	-	hypothetical protein
407	 33.76	0	449707..450633	+	308	161508673	set19	USA300HOU_0426	-	superantigen-like protein
408	 31.67	0	450982..451701	+	239	161508674	set20	USA300HOU_0427	-	superantigen-like protein 5
409	 29.89	0	452147..452842	+	231	161508675	set21	USA300HOU_0428	-	superantigen-like protein
410	 29.89	0	453263..453958	+	231	161508676	set22	USA300HOU_0429	-	superantigen-like protein 7
411	 28.04	-1	454302..455000	+	232	161508677	set23	USA300HOU_0430	-	superantigen-like protein
412	 29.33	0	455380..456078	+	232	161508678	set24	USA300HOU_0431	-	superantigen-like protein
413	 29.09	0	456444..457127	+	227	161508679	set25	USA300HOU_0432	-	superantigen-like protein
414	 38.41	+1	457391..458947	+	518	161508680	hsdM1	USA300HOU_0433	-	type I site-specific deoxyribonuclease methyltransferase subunit
415	 29.13	0	458940..460151	+	403	161508681	hsdS1	USA300HOU_0434	-	type I site-specific deoxyribonuclease specificity subunit
416	 28.32	-1	460534..461211	+	225	161508682	set	USA300HOU_0435	-	superantigen-like protein
417	 32.14	0	461233..462741	+	502	161508683	-	USA300HOU_0436	-	hypothetical protein
418	 33.33	0	462844..463152	-	102	161508684	-	USA300HOU_0437	-	hypothetical protein
419	 29.85	0	463490..464293	+	267	161508685	lpl11	USA300HOU_0438	-	lipoprotein
420	 29.71	0	464324..465124	+	266	161508686	-	USA300HOU_0439	-	hypothetical protein
421	 29.84	0	465999..466799	+	266	161508687	lpl7	USA300HOU_0441	-	hypothetical protein
422	 29.57	0	466818..467588	+	256	161508688	-	USA300HOU_0442	-	lipoprotein
423	 29.17	0	467620..468411	+	263	161508689	-	USA300HOU_0443	-	lipoprotein
424	 29.86	0	468481..469257	+	258	161508690	-	USA300HOU_0444	-	hypothetical protein
425	 29.41	0	469433..470248	+	271	161508691	-	USA300HOU_0445	-	hypothetical protein
426	 30.66	0	470267..471052	+	261	161508692	-	USA300HOU_0446	-	lipoprotein
427	 26.96	-1	471232..472047	+	271	161508693	-	USA300HOU_0447	-	lipoprotein
428	 30.32	0	472037..473365	+	442	161508694	-	USA300HOU_0448	-	hypothetical protein
429	 28.09	-1	473362..473685	+	107	161508695	-	USA300HOU_0449	-	hypothetical protein
430	 33.02	0	473704..474018	+	104	161508696	-	USA300HOU_0450	-	hypothetical protein
431	 30.77	0	474308..474502	-	64	161508697	-	USA300HOU_0451	-	hypothetical protein
432	 37.07	+1	474687..475889	+	400	161508698	cobW1	USA300HOU_0452	-	cobalamin (vitamin B12) biosynthesis protein
433	 32.64	0	475992..476135	-	47	161508699	-	USA300HOU_0453	-	hypothetical protein
434	 39.53	+1	476158..476286	+	42	161508700	-	USA300HOU_0454	-	hypothetical protein
435	 28.79	-1	476794..476859	-	21	161508701	-	USA300HOU_0455	-	hypothetical protein
436	 33.33	0	476891..476956	-	21	161508702	-	USA300HOU_0456	-	hypothetical protein
437	 37.31	+1	477477..478961	+	494	161508703	-	USA300HOU_0457	-	NADH dehydrogenase subunit 5
438	 38.73	+1	478974..481679	+	901	161508704	-	USA300HOU_0458	-	hypothetical protein
439	 33.06	0	481841..482203	+	120	161508705	-	USA300HOU_0459	-	hypothetical protein
440	 26.38	-1	482432..482848	-	138	161508706	-	USA300HOU_0460	-	hypothetical protein
441	 34.52	0	482886..483560	+	224	161508707	-	USA300HOU_0461	-	hypothetical protein
442	 33.88	0	483597..484331	+	244	161508708	-	USA300HOU_0462	-	peptidase
443	 43.86	+2	484509..484622	+	37	161508709	-	USA300HOU_0463	-	hypothetical protein
444	 32.86	0	490400..491242	+	280	161508710	-	USA300HOU_0464	-	ABC transporter ATP-binding protein
445	 36.52	+1	491574..492578	+	334	161508711	-	USA300HOU_0465	-	LysM family autolysin
446	 32.59	0	492763..493032	-	89	161508712	-	USA300HOU_0466	-	hypothetical protein
447	 34.81	0	493172..493576	+	134	161508713	-	USA300HOU_0467	-	hypothetical protein
448	 36.21	0	493566..494051	+	161	161508714	-	USA300HOU_0468	-	GNAT family acetyltransferase
449	 32.69	0	494220..495002	-	260	161508715	-	USA300HOU_0469	-	hypothetical protein
450	 33.33	0	494999..496117	-	372	161508716	-	USA300HOU_0470	-	hypothetical protein
451	 32.99	0	496232..497116	-	294	161508717	gltC	USA300HOU_0471	-	glutamate synthase operon transcriptional regulator
452	 37.62	+1	497297..501796	+	1499	161508718	gltB1	USA300HOU_0472	-	glutamate synthase (NADPH), large subunit
453	 38.32	+1	501814..503277	+	487	161508719	gltD	USA300HOU_0473	-	glutamate synthase subunit beta
454	 37.54	+1	504109..505536	+	475	161508720	treP	USA300HOU_0474	-	PTS family trehalose (tre) porter component IIBC
455	 36.20	0	505600..507240	+	546	161508721	amyA	USA300HOU_0475	-	alpha, alpha-phosphotrehalase
456	 33.14	0	508632..509156	+	174	161508722	-	USA300HOU_0476	-	GNAT family acetyltransferase
457	 36.20	0	509249..510922	+	557	161508723	dnaZX	USA300HOU_0477	-	DNA-directed DNA polymerase III gamma and tau subunits
458	 39.94	+1	511012..511329	+	105	161508724	-	USA300HOU_0478	-	hypothetical protein
459	 36.35	0	511336..511932	+	198	161508725	recR	USA300HOU_0479	-	recombination protein RecR
460	 33.03	0	518695..520032	+	445	161508726	-	USA300HOU_0480	-	lysine decarboxylase
461	 32.70	0	520025..520651	+	208	161508727	tmk	USA300HOU_0481	-	dTMP kinase
462	 37.58	+1	520679..521008	+	109	161508728	-	USA300HOU_0482	-	hypothetical protein
463	 30.53	0	521222..522148	+	308	161508729	holB	USA300HOU_0483	-	DNA-directed DNA polymerase III delta' subunit
464	 32.71	0	522149..522952	+	267	161508730	-	USA300HOU_0484	-	hypothetical protein
465	 32.70	0	522999..523316	+	105	161508731	-	USA300HOU_0485	-	DNA replication intiation control protein YabA
466	 29.29	0	523309..523407	+	32	161508732	-	USA300HOU_0486	-	hypothetical protein
467	 33.61	0	523590..524315	+	241	161508733	-	USA300HOU_0487	-	hypothetical protein
468	 33.73	0	524308..524556	+	82	161508734	-	USA300HOU_0488	-	hypothetical protein
469	 35.12	0	524558..525397	+	279	161508735	-	USA300HOU_0489	-	tetrapyrrole (corrin/porphyrin) methyltransferase
470	 33.99	0	525682..527655	+	657	161508736	metS	USA300HOU_0490	-	methionyl-tRNA synthetase
471	 36.56	+1	527686..528459	+	257	161508737	-	USA300HOU_0491	-	TatD family deoxyribonuclease
472	 34.82	0	528626..529162	+	178	161508738	-	USA300HOU_0492	-	hypothetical protein
473	 32.89	0	529173..530066	+	297	161508739	ksgA	USA300HOU_0493	-	dimethyladenosine transferase
474	 32.20	0	530166..530429	+	87	161508740	-	USA300HOU_0494	-	hypothetical protein
475	 37.61	+1	536154..536807	+	217	161508741	rplY	USA300HOU_0495	-	50S ribosomal protein L25/general stress protein Ctc
476	 32.98	0	537118..537690	+	190	161508742	pth	USA300HOU_0496	-	peptidyl-tRNA hydrolase
477	 34.25	0	537690..541196	+	1168	161508743	mfd	USA300HOU_0497	-	transcription-repair coupling factor
478	 32.87	0	541186..542712	+	508	161508744	-	USA300HOU_0498	-	MOP superfamily PST family polysaccharide transporter
479	 35.09	0	542712..543905	+	397	161508745	-	USA300HOU_0499	-	tetrapyrrole methyltransferase
480	 34.47	0	543902..544165	+	87	161508746	-	USA300HOU_0500	-	RNA-binding S4 domain-containing heat shock protein
481	 33.33	0	544183..544575	+	130	161508747	-	USA300HOU_0501	-	septum formation initiator
482	 34.33	0	544680..545081	+	133	161508748	-	USA300HOU_0502	-	hypothetical protein
483	 30.79	0	545261..546556	+	431	161508749	-	USA300HOU_0503	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.