IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2534	 37.86	+1	2735936..2736796	+	286	161510800	panE2	USA300HOU_2594	-	2-dehydropantoate 2-reductase
2535	 37.41	+1	2739510..2740958	+	482	161510801	-	USA300HOU_2595	-	APC family amino acid-polyamine-organocation transporter
2536	 37.99	+1	2741039..2742412	-	457	161510802	-	USA300HOU_2596	-	4-aminobutyrate aminotransferase
2537	 35.42	0	2742402..2742497	-	31	161510803	-	USA300HOU_2597	-	hypothetical protein
2538	 27.82	-1	2742634..2743050	+	138	161510804	-	USA300HOU_2598	-	hypothetical protein
2539	 33.67	0	2743173..2744063	+	296	161510805	fdaB	USA300HOU_2599	-	fructose-1,6-bisphosphate aldolase
2540	 36.27	0	2744256..2745752	-	498	161510806	mqo2	USA300HOU_2600	-	malate:quinone oxidoreductase
2541	 26.26	-1	2746081..2746377	+	98	161510807	-	USA300HOU_2601	-	hypothetical protein
2542	 36.46	+1	2746437..2748035	-	532	161510808	acsA2	USA300HOU_2602	-	acetate--CoA ligase
2543	 31.08	0	2748229..2748672	-	147	161510809	-	USA300HOU_2603	-	hypothetical protein
2544	 27.70	-1	2748953..2749165	-	70	161510810	-	USA300HOU_2604	-	hypothetical protein
2545	 38.83	+1	2749443..2751152	-	569	161510811	betA	USA300HOU_2605	-	choline dehydrogenase
2546	 36.96	+1	2751413..2752903	-	496	161510812	betB	USA300HOU_2606	-	betaine-aldehyde dehydrogenase
2547	 21.88	-2	2752972..2753067	+	31	161510813	-	USA300HOU_2607	-	hypothetical protein
2548	 34.92	0	2753153..2753719	+	188	161510814	-	USA300HOU_2608	-	hypothetical protein
2549	 32.90	0	2753907..2754593	-	228	161510815	-	USA300HOU_2609	-	metallo-beta-lactamase
2550	 35.61	0	2754857..2756479	-	540	161510816	betT	USA300HOU_2610	-	BCCT family betaine/carnitine/choline transporter
2551	 21.60	-2	2756611..2756772	+	53	161510817	-	USA300HOU_2611	-	hypothetical protein
2552	 28.83	-1	2756788..2756898	-	36	161510818	-	USA300HOU_2612	-	hypothetical protein
2553	 32.03	0	2756998..2757534	-	178	161510819	nrdG	USA300HOU_2613	-	anaerobic ribonucleotide reductase small subunit
2554	 34.68	0	2757531..2759381	-	616	161510820	nrdD	USA300HOU_2614	-	anaerobic ribonucleoside triphosphate reductase
2555	 36.03	0	2759628..2760998	-	456	161510821	citM	USA300HOU_2615	-	CitMHS family citrate-magnesium (Mg2+):proton (H+) citrate-calcium (Ca2+):proton (H+) symporter
2556	 30.21	0	2761320..2761415	-	31	161510822	-	USA300HOU_2616	-	hypothetical protein
2557	 37.13	+1	2761491..2762096	-	201	161510823	cysG	USA300HOU_2617	-	precorrin-2 dehydrogenase
2558	 34.82	0	2762159..2764039	-	626	161510824	cysJ	USA300HOU_2618	-	sulfite reductase (NADPH) alpha subunit
2559	 30.52	0	2764434..2764931	-	165	161510825	gpxA2	USA300HOU_2619	-	glutathione peroxidase
2560	 23.68	-2	2765626..2765739	-	37	161510826	-	USA300HOU_2620	-	hypothetical protein
2561	 31.38	0	2766355..2768355	-	666	161510827	-	USA300HOU_2621	-	ABC transporter ATP-binding protein
2562	 34.79	0	2768352..2769107	-	251	161510828	-	USA300HOU_2622	-	ABC transporter ATP-binding protein
2563	 29.95	0	2769215..2770102	-	295	161510829	-	USA300HOU_2623	-	sensor histidine kinase
2564	 29.88	0	2770113..2770778	-	221	161510830	-	USA300HOU_2624	-	response regulator
2565	 30.85	0	2770804..2771004	-	66	161510831	-	USA300HOU_2625	-	hypothetical protein
2566	 35.51	0	2771202..2772626	+	474	161510832	-	USA300HOU_2626	-	alkaline phosphatase
2567	 30.39	0	2772686..2772787	-	33	161510833	-	USA300HOU_2627	-	hypothetical protein
2568	 32.02	0	2772909..2773364	-	151	161510834	-	USA300HOU_2628	-	MarR family transcriptional regulator
2569	 33.33	0	2773609..2774370	-	253	161510835	-	USA300HOU_2629	-	tributyrin esterase EstA
2570	 38.70	+1	2774486..2777185	-	899	161510836	clfB	USA300HOU_2630	-	clumping factor B
2571	 29.50	0	2777535..2778239	-	234	161510837	-	USA300HOU_2631	-	transcriptional regulator
2572	 36.74	+1	2778338..2779306	-	322	161510838	arcC3	USA300HOU_2632	-	carbamate kinase
2573	 35.07	0	2779296..2780732	-	478	161510839	arcD3	USA300HOU_2633	-	APC family amino acid-polyamine-organocation transporter
2574	 33.14	0	2780817..2781827	-	336	161510840	arcB3	USA300HOU_2634	-	ornithine carbamoyltransferase
2575	 34.39	0	2781860..2783095	-	411	161510841	arcA3	USA300HOU_2635	-	arginine deiminase
2576	 30.00	0	2783442..2783891	-	149	161510842	argR3	USA300HOU_2636	-	ArgR family transcription regulator
2577	 35.69	0	2784258..2785787	-	509	161510843	aur	USA300HOU_2637	-	zinc metalloproteinase aureolysin
2578	 30.87	0	2786211..2786738	-	175	161510844	isaB	USA300HOU_2638	-	immunodominant antigen B
2579	 33.97	0	2786981..2787454	+	157	161510845	-	USA300HOU_2639	-	hypothetical protein
2580	 31.09	0	2787694..2789568	+	624	161510846	-	USA300HOU_2640	-	transcription antiterminator
2581	 38.45	+1	2789645..2791597	+	650	161510847	-	USA300HOU_2641	-	PTS family fructose/mannitol (fru) porter component IIABC
2582	 35.57	0	2791611..2792549	+	312	161510848	manA2	USA300HOU_2642	-	mannose-6-phosphate isomerase
2583	 34.74	0	2792661..2795642	-	993	161510849	-	USA300HOU_2643	-	bacteriophage infection protein
2584	 32.74	0	2795853..2797712	+	619	161510850	-	USA300HOU_2644	-	N-acetylmuramoyl-L-alanine amidase
2585	 34.76	0	2797979..2798539	-	186	161510851	-	USA300HOU_2645	-	isochorismatase hydrolase
2586	 32.13	0	2798707..2800620	-	637	161510852	sasF	USA300HOU_2646	-	LPXTG family cell wall surface anchor protein
2587	 33.26	0	2800856..2802214	-	452	161510853	-	USA300HOU_2647	-	hypothetical protein
2588	 34.46	0	2802207..2803715	-	502	161510854	-	USA300HOU_2648	-	glycosyltransferase
2589	 34.09	0	2803733..2806123	-	796	161510855	secA2	USA300HOU_2649	-	preprotein translocase subunit SecA
2590	 33.12	0	2806113..2807072	-	319	161510856	-	USA300HOU_2650	-	hypothetical protein
2591	 36.20	0	2807050..2808621	-	523	161510857	-	USA300HOU_2651	-	hypothetical protein
2592	 34.11	0	2808608..2810161	-	517	161510858	-	USA300HOU_2652	-	hypothetical protein
2593	 28.80	-1	2810172..2811383	-	403	161510859	secY2	USA300HOU_2653	-	preprotein translocase subunit SecY
2594	 38.50	+1	2811513..2818328	-	2271	161510860	-	USA300HOU_2654	-	serine-threonine rich protein
2595	 36.80	+1	2818873..2819565	-	230	161510861	-	USA300HOU_2655	-	hypothetical protein
2596	 30.77	0	2819831..2820259	+	142	161510862	-	USA300HOU_2656	-	hypothetical protein
2597	 33.33	0	2820243..2820548	+	101	161510863	-	USA300HOU_2657	-	hypothetical protein
2598	 34.72	0	2820702..2821061	+	119	161510864	-	USA300HOU_2658	-	hypothetical protein
2599	 33.99	0	2821146..2821757	-	203	161510865	-	USA300HOU_2659	-	hypothetical protein
2600	 34.80	0	2821836..2822312	-	158	161510866	msrA3	USA300HOU_2660	-	methionine sulfoxide reductase A
2601	 33.13	0	2822315..2822815	-	166	161510867	-	USA300HOU_2661	-	acetyltransferase
2602	 32.29	0	2823050..2823817	-	255	161510868	capC	USA300HOU_2662	-	capsular polysaccharide biosynthesis protein CapC
2603	 35.79	0	2823814..2824506	-	230	161510869	capB	USA300HOU_2663	-	capsular polysaccharide biosynthesis protein CapB
2604	 28.36	-1	2824523..2825185	-	220	161510870	capA	USA300HOU_2664	-	capsular polysaccharide biosynthesis protein CapA
2605	 27.45	-1	2826033..2826593	-	186	161510871	icaR	USA300HOU_2665	-	ica operon transcriptional regulator R
2606	 34.38	0	2826757..2827995	+	412	161510872	icaA	USA300HOU_2666	-	N-glycosyltransferase PgaC
2607	 31.37	0	2827959..2828264	+	101	161510873	icaD	USA300HOU_2667	-	intercellular adhesion protein D
2608	 29.10	0	2828261..2829133	+	290	161510874	icaB	USA300HOU_2668	-	intercellular adhesion protein B
2609	 27.26	-1	2829120..2830172	+	350	161510875	icaC	USA300HOU_2669	-	intercellular adhesion protein C
2610	 47.17	+2	2830363..2830521	-	52	161510876	-	USA300HOU_2670	-	hypothetical protein
2611	 34.31	0	2830619..2832664	-	681	161510877	lip	USA300HOU_2671	-	triacylglycerol lipase
2612	 27.23	-1	2833382..2833594	-	70	161510878	-	USA300HOU_2672	-	hypothetical protein
2613	 34.76	0	2833754..2834386	-	210	161510879	hisIE	USA300HOU_2673	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2614	 37.29	+1	2834383..2835141	-	252	161510880	hisF	USA300HOU_2674	-	imidazoleglycerol-phosphate synthase subunit HisF
2615	 39.01	+1	2835138..2835842	-	234	161510881	hisA	USA300HOU_2675	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2616	 36.44	+1	2835835..2836413	-	192	161510882	hisH	USA300HOU_2676	-	imidazole glycerol phosphate synthase subunit HisH
2617	 37.13	+1	2836410..2836988	-	192	161510883	hisB	USA300HOU_2677	-	imidazoleglycerol-phosphate dehydratase
2618	 34.52	0	2836957..2837970	-	337	161510884	hisC2	USA300HOU_2678	-	histidinol-phosphate transaminase
2619	 35.72	0	2837986..2839242	-	418	161510885	hisD	USA300HOU_2679	-	histidinol dehydrogenase
2620	 33.98	0	2839229..2839843	-	204	161510886	hisG	USA300HOU_2680	-	ATP phosphoribosyltransferase catalytic subunit
2621	 35.16	0	2839861..2840679	-	272	161510887	hisZ	USA300HOU_2681	-	ATP phosphoribosyltransferase regulatory subunit
2622	 25.93	-1	2840870..2840977	+	35	161510888	-	USA300HOU_2682	-	hypothetical protein
2623	 32.53	0	2840984..2842108	-	374	161510889	-	USA300HOU_2683	-	hypothetical protein
2624	 29.72	0	2842226..2842723	-	165	161510890	-	USA300HOU_2684	-	hypothetical protein
2625	 29.86	0	2842770..2843603	-	277	161510891	-	USA300HOU_2685	-	cobalt ABC transporter
2626	 33.27	0	2843600..2845312	-	570	161510892	-	USA300HOU_2686	-	ABC transporter ATP-binding protein
2627	 32.61	0	2845365..2845919	-	184	161510893	-	USA300HOU_2687	-	hypothetical protein
2628	 34.63	0	2845948..2846796	-	282	161510894	-	USA300HOU_2688	-	hypothetical protein
2629	 32.95	0	2847176..2847691	+	171	161510895	-	USA300HOU_2689	-	hypothetical protein
2630	 35.80	0	2847840..2848811	-	323	161510896	-	USA300HOU_2690	-	gluconolactonase
2631	 34.69	0	2849055..2850011	+	318	161510897	-	USA300HOU_2691	-	hypothetical protein
2632	 37.40	+1	2850163..2850801	+	212	161510898	pcp	USA300HOU_2692	-	pyrrolidone-carboxylate peptidase
2633	 29.17	0	2850920..2851687	-	255	161510899	-	USA300HOU_2693	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.