IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2496	 35.39	0	2702285..2703793	-	502	161510762	crtN	USA300HOU_2556	-	squalene synthase
2497	 31.37	0	2703805..2704668	-	287	161510763	crtM	USA300HOU_2557	-	squalene desaturase
2498	 36.41	+1	2704705..2705841	-	378	161510764	-	USA300HOU_2558	-	glycosyltransferase
2499	 35.41	0	2705838..2707331	-	497	161510765	-	USA300HOU_2559	-	phytoene dehydrogenase
2500	 29.32	0	2707324..2707821	-	165	161510766	-	USA300HOU_2560	-	hypothetical protein
2501	 36.72	+1	2707987..2708754	-	255	161510767	-	USA300HOU_2561	-	secretory antigen
2502	 33.39	0	2709115..2710926	-	603	161510768	-	USA300HOU_2562	-	acetyltransferase
2503	 25.36	-1	2711437..2711925	-	162	161510769	-	USA300HOU_2563	-	GNAT family acetyltransferase
2504	 41.60	+2	2712201..2712902	-	233	161510770	isaA	USA300HOU_2564	-	immunodominant antigen A
2505	 36.27	0	2713510..2714565	-	351	161510771	-	USA300HOU_2565	-	hypothetical protein
2506	 32.67	0	2714942..2715544	+	200	161510772	-	USA300HOU_2566	-	TetR family transcriptional regulator
2507	 35.33	0	2715742..2716242	+	166	161510773	-	USA300HOU_2567	-	hypothetical protein
2508	 32.90	0	2716462..2716692	+	76	161510774	-	USA300HOU_2568	-	hypothetical protein
2509	 34.66	0	2716842..2717219	-	125	161510775	-	USA300HOU_2569	-	lactoylglutatione lyase
2510	 32.60	0	2717236..2718057	-	273	161510776	-	USA300HOU_2570	-	hypothetical protein
2511	 34.33	0	2718077..2718376	-	99	161510777	-	USA300HOU_2571	-	hypothetical protein
2512	 31.72	0	2718507..2719064	+	185	161510778	-	USA300HOU_2572	-	TetR family transcriptional regulator
2513	 38.01	+1	2719057..2719761	+	234	161510779	-	USA300HOU_2573	-	dehydrogenase
2514	 34.42	0	2719859..2720869	+	336	161510780	-	USA300HOU_2574	-	hypothetical protein
2515	 37.67	+1	2720889..2721719	+	276	161510781	-	USA300HOU_2575	-	hydrolase
2516	 35.24	0	2721866..2722756	-	296	161510782	cobW3	USA300HOU_2576	-	cobalamin (vitamin B12) biosynthesis protein
2517	 34.60	0	2722854..2724194	-	446	161510783	-	USA300HOU_2577	-	FeoB family ferrous iron (Fe2+) uptake protein
2518	 35.32	0	2724188..2725294	-	368	161510784	-	USA300HOU_2578	-	hypothetical protein
2519	 26.94	-1	2725628..2725924	-	98	161510785	-	USA300HOU_2579	-	hypothetical protein
2520	 36.86	+1	2725912..2726280	-	122	161510786	-	USA300HOU_2580	-	hypothetical protein
2521	 32.97	0	2726295..2726573	-	92	161510787	-	USA300HOU_2581	-	hypothetical protein
2522	 38.52	+1	2726915..2727781	-	288	161510788	-	USA300HOU_2582	-	hypothetical protein
2523	 35.49	0	2727999..2729063	+	354	161510789	pyrD	USA300HOU_2583	-	dihydroorotate dehydrogenase 2
2524	 30.43	0	2729218..2729493	+	91	161510790	-	USA300HOU_2584	-	hypothetical protein
2525	 24.56	-2	2729530..2729643	-	37	161510791	-	USA300HOU_2585	-	hypothetical protein
2526	 33.75	0	2729679..2730401	-	240	161510792	-	USA300HOU_2586	-	hypothetical protein
2527	 36.22	0	2730755..2731204	+	149	161510793	-	USA300HOU_2587	-	hypothetical protein
2528	 30.44	0	2731285..2731872	-	195	161510794	-	USA300HOU_2588	-	transcriptional regulator
2529	 35.35	0	2731850..2731948	-	32	161510795	-	USA300HOU_2589	-	hypothetical protein
2530	 36.60	+1	2732005..2733687	+	560	161510796	-	USA300HOU_2590	-	peptidase
2531	 33.06	0	2733816..2734187	-	123	161510797	panD	USA300HOU_2591	-	aspartate alpha-decarboxylase
2532	 36.27	0	2734201..2735052	-	283	161510798	panC	USA300HOU_2592	-	pantoate--beta-alanine ligase
2533	 36.26	0	2735045..2735863	-	272	161510799	panB	USA300HOU_2593	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2534	 37.86	+1	2735936..2736796	+	286	161510800	panE2	USA300HOU_2594	-	2-dehydropantoate 2-reductase
2535	 37.41	+1	2739510..2740958	+	482	161510801	-	USA300HOU_2595	-	APC family amino acid-polyamine-organocation transporter
2536	 37.99	+1	2741039..2742412	-	457	161510802	-	USA300HOU_2596	-	4-aminobutyrate aminotransferase
2537	 35.42	0	2742402..2742497	-	31	161510803	-	USA300HOU_2597	-	hypothetical protein
2538	 27.82	-1	2742634..2743050	+	138	161510804	-	USA300HOU_2598	-	hypothetical protein
2539	 33.67	0	2743173..2744063	+	296	161510805	fdaB	USA300HOU_2599	-	fructose-1,6-bisphosphate aldolase
2540	 36.27	0	2744256..2745752	-	498	161510806	mqo2	USA300HOU_2600	-	malate:quinone oxidoreductase
2541	 26.26	-1	2746081..2746377	+	98	161510807	-	USA300HOU_2601	-	hypothetical protein
2542	 36.46	+1	2746437..2748035	-	532	161510808	acsA2	USA300HOU_2602	-	acetate--CoA ligase
2543	 31.08	0	2748229..2748672	-	147	161510809	-	USA300HOU_2603	-	hypothetical protein
2544	 27.70	-1	2748953..2749165	-	70	161510810	-	USA300HOU_2604	-	hypothetical protein
2545	 38.83	+1	2749443..2751152	-	569	161510811	betA	USA300HOU_2605	-	choline dehydrogenase
2546	 36.96	+1	2751413..2752903	-	496	161510812	betB	USA300HOU_2606	-	betaine-aldehyde dehydrogenase
2547	 21.88	-2	2752972..2753067	+	31	161510813	-	USA300HOU_2607	-	hypothetical protein
2548	 34.92	0	2753153..2753719	+	188	161510814	-	USA300HOU_2608	-	hypothetical protein
2549	 32.90	0	2753907..2754593	-	228	161510815	-	USA300HOU_2609	-	metallo-beta-lactamase
2550	 35.61	0	2754857..2756479	-	540	161510816	betT	USA300HOU_2610	-	BCCT family betaine/carnitine/choline transporter
2551	 21.60	-2	2756611..2756772	+	53	161510817	-	USA300HOU_2611	-	hypothetical protein
2552	 28.83	-1	2756788..2756898	-	36	161510818	-	USA300HOU_2612	-	hypothetical protein
2553	 32.03	0	2756998..2757534	-	178	161510819	nrdG	USA300HOU_2613	-	anaerobic ribonucleotide reductase small subunit
2554	 34.68	0	2757531..2759381	-	616	161510820	nrdD	USA300HOU_2614	-	anaerobic ribonucleoside triphosphate reductase
2555	 36.03	0	2759628..2760998	-	456	161510821	citM	USA300HOU_2615	-	CitMHS family citrate-magnesium (Mg2+):proton (H+) citrate-calcium (Ca2+):proton (H+) symporter
2556	 30.21	0	2761320..2761415	-	31	161510822	-	USA300HOU_2616	-	hypothetical protein
2557	 37.13	+1	2761491..2762096	-	201	161510823	cysG	USA300HOU_2617	-	precorrin-2 dehydrogenase
2558	 34.82	0	2762159..2764039	-	626	161510824	cysJ	USA300HOU_2618	-	sulfite reductase (NADPH) alpha subunit
2559	 30.52	0	2764434..2764931	-	165	161510825	gpxA2	USA300HOU_2619	-	glutathione peroxidase
2560	 23.68	-2	2765626..2765739	-	37	161510826	-	USA300HOU_2620	-	hypothetical protein
2561	 31.38	0	2766355..2768355	-	666	161510827	-	USA300HOU_2621	-	ABC transporter ATP-binding protein
2562	 34.79	0	2768352..2769107	-	251	161510828	-	USA300HOU_2622	-	ABC transporter ATP-binding protein
2563	 29.95	0	2769215..2770102	-	295	161510829	-	USA300HOU_2623	-	sensor histidine kinase
2564	 29.88	0	2770113..2770778	-	221	161510830	-	USA300HOU_2624	-	response regulator
2565	 30.85	0	2770804..2771004	-	66	161510831	-	USA300HOU_2625	-	hypothetical protein
2566	 35.51	0	2771202..2772626	+	474	161510832	-	USA300HOU_2626	-	alkaline phosphatase
2567	 30.39	0	2772686..2772787	-	33	161510833	-	USA300HOU_2627	-	hypothetical protein
2568	 32.02	0	2772909..2773364	-	151	161510834	-	USA300HOU_2628	-	MarR family transcriptional regulator
2569	 33.33	0	2773609..2774370	-	253	161510835	-	USA300HOU_2629	-	tributyrin esterase EstA
2570	 38.70	+1	2774486..2777185	-	899	161510836	clfB	USA300HOU_2630	-	clumping factor B
2571	 29.50	0	2777535..2778239	-	234	161510837	-	USA300HOU_2631	-	transcriptional regulator
2572	 36.74	+1	2778338..2779306	-	322	161510838	arcC3	USA300HOU_2632	-	carbamate kinase
2573	 35.07	0	2779296..2780732	-	478	161510839	arcD3	USA300HOU_2633	-	APC family amino acid-polyamine-organocation transporter
2574	 33.14	0	2780817..2781827	-	336	161510840	arcB3	USA300HOU_2634	-	ornithine carbamoyltransferase
2575	 34.39	0	2781860..2783095	-	411	161510841	arcA3	USA300HOU_2635	-	arginine deiminase
2576	 30.00	0	2783442..2783891	-	149	161510842	argR3	USA300HOU_2636	-	ArgR family transcription regulator
2577	 35.69	0	2784258..2785787	-	509	161510843	aur	USA300HOU_2637	-	zinc metalloproteinase aureolysin
2578	 30.87	0	2786211..2786738	-	175	161510844	isaB	USA300HOU_2638	-	immunodominant antigen B
2579	 33.97	0	2786981..2787454	+	157	161510845	-	USA300HOU_2639	-	hypothetical protein
2580	 31.09	0	2787694..2789568	+	624	161510846	-	USA300HOU_2640	-	transcription antiterminator
2581	 38.45	+1	2789645..2791597	+	650	161510847	-	USA300HOU_2641	-	PTS family fructose/mannitol (fru) porter component IIABC
2582	 35.57	0	2791611..2792549	+	312	161510848	manA2	USA300HOU_2642	-	mannose-6-phosphate isomerase
2583	 34.74	0	2792661..2795642	-	993	161510849	-	USA300HOU_2643	-	bacteriophage infection protein
2584	 32.74	0	2795853..2797712	+	619	161510850	-	USA300HOU_2644	-	N-acetylmuramoyl-L-alanine amidase
2585	 34.76	0	2797979..2798539	-	186	161510851	-	USA300HOU_2645	-	isochorismatase hydrolase
2586	 32.13	0	2798707..2800620	-	637	161510852	sasF	USA300HOU_2646	-	LPXTG family cell wall surface anchor protein
2587	 33.26	0	2800856..2802214	-	452	161510853	-	USA300HOU_2647	-	hypothetical protein
2588	 34.46	0	2802207..2803715	-	502	161510854	-	USA300HOU_2648	-	glycosyltransferase
2589	 34.09	0	2803733..2806123	-	796	161510855	secA2	USA300HOU_2649	-	preprotein translocase subunit SecA
2590	 33.12	0	2806113..2807072	-	319	161510856	-	USA300HOU_2650	-	hypothetical protein
2591	 36.20	0	2807050..2808621	-	523	161510857	-	USA300HOU_2651	-	hypothetical protein
2592	 34.11	0	2808608..2810161	-	517	161510858	-	USA300HOU_2652	-	hypothetical protein
2593	 28.80	-1	2810172..2811383	-	403	161510859	secY2	USA300HOU_2653	-	preprotein translocase subunit SecY
2594	 38.50	+1	2811513..2818328	-	2271	161510860	-	USA300HOU_2654	-	serine-threonine rich protein
2595	 36.80	+1	2818873..2819565	-	230	161510861	-	USA300HOU_2655	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.