IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
205	 35.06	0	246056..247153	+	365	161508471	-	USA300HOU_0220	-	maltose/maltodextrin ABC transporter ATP-binding protein
206	 33.96	0	247166..248437	+	423	161508472	-	USA300HOU_0221	-	ABC transporter substrate-binding protein
207	 35.54	0	248440..249708	+	422	161508473	-	USA300HOU_0222	-	maltose/maltodextrin ABC transporter membrane protein
208	 33.93	0	249710..250549	+	279	161508474	-	USA300HOU_0223	-	maltose/maltodextrin ABC transporter membrane protein
209	 38.89	+1	250620..251699	+	359	161508475	-	USA300HOU_0224	-	dehydrogenase
210	 39.39	+1	251724..252764	+	346	161508476	-	USA300HOU_0225	-	dehydrogenase
211	 35.91	0	252819..253787	+	322	161508477	-	USA300HOU_0226	-	hypothetical protein
212	 30.39	0	253975..254076	+	33	161508478	-	USA300HOU_0227	-	hypothetical protein
213	 27.05	-1	254149..254721	-	190	161508479	-	USA300HOU_0228	-	hypothetical protein
214	 36.34	0	254858..256255	+	465	161508480	-	USA300HOU_0229	-	sugar phosphate antiporter
215	 32.67	0	256614..257372	-	252	161508481	-	USA300HOU_0230	-	response regulator
216	 32.76	0	257365..258921	-	518	161508482	-	USA300HOU_0231	-	sensor histidine kinase
217	 34.16	0	258918..259886	-	322	161508483	-	USA300HOU_0232	-	iron (Fe3+) ABC transporter membrane/binding protein
218	 36.73	+1	260459..262723	+	754	161508484	pfl	USA300HOU_0233	-	formate acetyltransferase
219	 36.11	0	262746..263501	+	251	161508485	pflA	USA300HOU_0234	-	[formate-C-acetyltransferase]-activating enzyme
220	 31.79	0	263605..263799	+	64	161508486	-	USA300HOU_0235	-	hypothetical protein
221	 30.85	0	263786..265600	+	604	161508487	glpQ1	USA300HOU_0236	-	hypothetical protein
222	 31.88	0	265764..266108	-	114	161508488	-	USA300HOU_0237	-	hypothetical protein
223	 34.10	0	266298..268127	+	609	161508489	-	USA300HOU_0238	-	staphylocoagulase precursor
224	 37.04	+1	268309..268416	-	35	161508490	-	USA300HOU_0239	-	hypothetical protein
225	 43.22	+2	268730..269923	-	397	161508491	-	USA300HOU_0240	-	acetyl-CoA C-acetyltransferase
226	 37.36	+1	269944..272205	-	753	161508492	-	USA300HOU_0241	-	3-hydroxyacyl-CoA dehydrogenase
227	 38.74	+1	272391..273647	-	418	161508493	-	USA300HOU_0242	-	acyl-CoA dehydrogenase
228	 37.32	+1	273714..275219	-	501	161508494	-	USA300HOU_0243	-	long-chain-fatty-acid--CoA ligase
229	 36.82	+1	275245..276822	-	525	161508495	-	USA300HOU_0244	-	3-oxoacid CoA-transferase
230	 34.23	0	277176..278405	+	409	161508496	-	USA300HOU_0245	-	hypothetical protein
231	 31.03	0	278719..280194	-	491	161508497	-	USA300HOU_0246	-	ABC transporter ATP-binding protein
232	 35.29	0	280392..280748	-	118	161508498	-	USA300HOU_0247	-	hypothetical protein
233	 25.86	-1	280905..281078	-	57	161508499	-	USA300HOU_0248	-	hypothetical protein
234	 34.82	0	281104..282249	-	381	161508500	hmp	USA300HOU_0249	-	nitric oxide dioxygenase
235	 29.63	0	282404..282511	+	35	161508501	-	USA300HOU_0250	-	hypothetical protein
236	 37.32	+1	282822..283775	+	317	161508502	ldh	USA300HOU_0251	-	L-lactate dehydrogenase
237	 39.28	+1	284095..285624	-	509	161508503	-	USA300HOU_0252	-	PTS family glucose/glucoside (glc) porter component IIABC
238	 39.64	+1	285986..286921	+	311	161508504	-	USA300HOU_0253	-	purine nucleosidase
239	 18.18	-2	287031..287129	+	32	161508505	-	USA300HOU_0254	-	hypothetical protein
240	 33.09	0	287260..289356	+	698	161508506	-	USA300HOU_0255	-	transcription antiterminator
241	 34.83	0	289341..289808	+	155	161508507	-	USA300HOU_0256	-	PTS family porter component IIA
242	 30.47	0	289831..290109	+	92	161508508	-	USA300HOU_0257	-	PTS family galactitol (gat) porter component IIB
243	 36.83	+1	290336..291595	+	419	161508509	gatC1	USA300HOU_0258	-	PTS family galactitol (gat) porter component IIC
244	 36.54	+1	291610..292668	+	352	161508510	gutB	USA300HOU_0259	-	L-iditol 2-dehydrogenase
245	 29.93	0	292670..292816	+	48	161508511	-	USA300HOU_0260	-	hypothetical protein
246	 38.03	+1	292840..293883	+	347	161508512	-	USA300HOU_0261	-	zinc (Zn2+)-binding dehydrogenase
247	 32.91	0	294411..295127	+	238	161508513	ispD2	USA300HOU_0262	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
248	 34.80	0	295120..296145	+	341	161508514	-	USA300HOU_0263	-	alcohol dehydrogenase
249	 32.86	0	296167..297861	+	564	161508515	tagB1	USA300HOU_0264	-	glycosyl/glycerophosphate transferase
250	 33.42	0	298289..299458	+	389	161508516	tagF	USA300HOU_0265	-	CDP-glycerol glycerophosphotransferase
251	 32.22	0	299734..300450	+	238	161508517	-	USA300HOU_0266	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
252	 33.53	0	300443..301468	+	341	161508518	-	USA300HOU_0267	-	zinc (Zn2+)-binding dehydrogenase
253	 31.91	0	301490..303178	+	562	161508519	tagB2	USA300HOU_0268	-	glycosyl/glycerophosphate transferase
254	 31.94	0	303211..304935	+	574	161508520	-	USA300HOU_0269	-	glycosyltransferase
255	 32.74	0	305075..305749	+	224	161508521	scdA	USA300HOU_0270	-	cell wall biosynthesis protein ScdA
256	 35.56	0	305996..307750	+	584	161508522	lytS	USA300HOU_0271	-	sensor histidine kinase LytS
257	 32.25	0	307753..308493	+	246	161508523	lytR	USA300HOU_0272	-	response regulator LytR
258	 34.46	0	308606..309049	+	147	161508524	lrgA	USA300HOU_0273	-	murein hydrolase regulator LrgA
259	 36.61	+1	309042..309743	+	233	161508525	lrgB	USA300HOU_0274	-	antiholin-like protein LrgB
260	 33.48	0	309851..310555	-	234	161508526	-	USA300HOU_0275	-	GntR family transcriptional regulator
261	 34.85	0	310704..311495	+	263	161508527	-	USA300HOU_0276	-	PTS family glucose/glucoside (glc) porter component IIABC
262	 36.81	+1	311511..312947	+	478	161508528	bglA	USA300HOU_0277	-	6-phospho-beta-glucosidase
263	 37.50	+1	313019..313210	+	63	161508529	-	USA300HOU_0278	-	hypothetical protein
264	 34.38	0	313381..314142	-	253	161508530	-	USA300HOU_0279	-	hypothetical protein
265	 37.60	+1	314393..315307	-	304	161508531	rbsK	USA300HOU_0280	-	ribokinase
266	 31.85	0	315335..315739	-	134	161508532	rbsD	USA300HOU_0281	-	D-ribose pyranase
267	 38.32	+1	315754..316635	-	293	161508533	-	USA300HOU_0282	-	DMT superfamily drug/metabolite transporter
268	 37.34	+1	316867..317865	-	332	161508534	-	USA300HOU_0283	-	ribose operon repressor
269	 19.44	-2	318016..318195	+	59	161508535	-	USA300HOU_0284	-	hypothetical protein
270	 26.72	-1	318245..318637	+	130	161508536	-	USA300HOU_0285	-	hypothetical protein
271	 30.37	0	318865..319269	+	134	161508537	-	USA300HOU_0286	-	transposase
272	 37.52	+1	319310..320695	-	461	161508538	-	USA300HOU_0287	-	major facilitator transporter
273	 35.35	0	320920..321912	+	330	161508539	-	USA300HOU_0288	-	C59 family penicillin amidase
274	 39.73	+1	322220..323188	+	322	161508540	lytM	USA300HOU_0289	-	peptidoglycan hydrolase
275	 31.36	0	323240..323899	-	219	161508541	-	USA300HOU_0290	-	ABC transporter ATP-binding protein
276	 31.60	0	323913..324833	-	306	161508542	-	USA300HOU_0291	-	hypothetical protein
277	 31.88	0	324830..325996	-	388	161508543	-	USA300HOU_0292	-	hypothetical protein
278	 28.41	-1	326064..327587	-	507	161508544	-	USA300HOU_0293	-	hypothetical protein
279	 27.83	-1	327858..328511	+	217	161508545	-	USA300HOU_0294	-	hypothetical protein
280	 28.06	-1	328545..329132	+	195	161508546	-	USA300HOU_0295	-	hypothetical protein
281	 37.32	+1	329275..330177	-	300	161508547	-	USA300HOU_0296	-	hypothetical protein
282	 37.76	+1	330416..330709	+	97	161508548	esxA	USA300HOU_0297	-	hypothetical protein
283	 30.89	0	330793..333822	+	1009	161508549	esaA	USA300HOU_0298	-	hypothetical protein
284	 32.68	0	333822..334280	+	152	161508550	essA	USA300HOU_0299	-	virulence protein EssA
285	 29.63	0	334252..334494	+	80	161508551	esaB	USA300HOU_0300	-	virulence protein EsaB
286	 29.89	0	334507..335841	+	444	161508552	essB	USA300HOU_0301	-	hypothetical protein
287	 34.01	0	335863..340302	+	1479	161508553	essC	USA300HOU_0302	-	virulence protein EssC
288	 31.04	0	340332..340724	+	130	161508554	esaC	USA300HOU_0303	-	virulence protein EsaC
289	 39.05	+1	340740..341054	+	104	161508555	esxB	USA300HOU_0304	-	virulence protein EsxB
290	 29.50	0	341051..341728	+	225	161508556	-	USA300HOU_0305	-	hypothetical protein
291	 37.11	+1	341728..342045	+	105	161508557	-	USA300HOU_0306	-	hypothetical protein
292	 35.72	0	342055..343899	+	614	161508558	-	USA300HOU_0307	-	hypothetical protein
293	 28.66	-1	343910..344401	+	163	161508559	-	USA300HOU_0308	-	hypothetical protein
294	 26.90	-1	344609..345292	+	227	161508560	-	USA300HOU_0309	-	hypothetical protein
295	 28.10	-1	345439..346050	+	203	161508561	-	USA300HOU_0310	-	hypothetical protein
296	 26.94	-1	346186..346404	+	72	161508562	-	USA300HOU_0311	-	hypothetical protein
297	 30.54	0	346536..347036	+	166	161508563	-	USA300HOU_0312	-	hypothetical protein
298	 28.34	-1	347047..347547	+	166	161508564	-	USA300HOU_0313	-	hypothetical protein
299	 29.88	0	348064..348555	+	163	161508565	-	USA300HOU_0315	-	hypothetical protein
300	 28.36	-1	348765..349448	+	227	161508566	-	USA300HOU_0316	-	hypothetical protein
301	 29.94	0	350034..350534	+	166	161508567	-	USA300HOU_0317	-	hypothetical protein
302	 30.34	0	350546..351046	+	166	161508568	-	USA300HOU_0318	-	hypothetical protein
303	 29.74	0	351568..352068	+	166	161508569	-	USA300HOU_0319	-	hypothetical protein
304	 29.86	0	352079..352567	+	162	161508570	-	USA300HOU_0320	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.