IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2453	 34.54	0	2659566..2660558	+	330	161510719	ddh	USA300HOU_2513	-	D-lactate dehydrogenase
2454	 34.21	0	2660807..2661607	-	266	161510720	-	USA300HOU_2514	-	HAD family phosphatase
2455	 24.84	-2	2661928..2662563	+	211	161510721	-	USA300HOU_2515	-	ABC transporter ATP-binding protein
2456	 28.01	-1	2662569..2663300	+	243	161510722	-	USA300HOU_2516	-	hypothetical protein
2457	 32.85	0	2663460..2664080	-	206	161510723	srtA	USA300HOU_2517	-	sortase
2458	 36.99	+1	2664274..2664765	+	163	161510724	-	USA300HOU_2518	-	acetyltransferase
2459	 33.33	0	2665243..2665434	+	63	161510725	-	USA300HOU_2519	-	hypothetical protein
2460	 30.30	0	2665435..2665533	-	32	161510726	-	USA300HOU_2520	-	hypothetical protein
2461	 41.11	+2	2665552..2666451	-	299	161510727	sdhA2	USA300HOU_2521	-	L-serine ammonia-lyase alpha subunit
2462	 32.75	0	2666465..2667145	-	226	161510728	sdhB2	USA300HOU_2522	-	L-serine ammonia-lyase beta subunit
2463	 37.45	+1	2667148..2668191	-	347	161510729	-	USA300HOU_2523	-	transcriptional regulator
2464	 34.68	0	2669101..2670063	+	320	161510730	-	USA300HOU_2524	-	hypothetical protein
2465	 37.25	+1	2670145..2671113	-	322	161510731	-	USA300HOU_2525	-	hypothetical protein
2466	 36.23	0	2671246..2671590	-	114	161510732	-	USA300HOU_2526	-	hypothetical protein
2467	 36.98	+1	2671632..2672042	-	136	161510733	-	USA300HOU_2527	-	hypothetical protein
2468	 28.43	-1	2672107..2672208	+	33	161510734	-	USA300HOU_2528	-	hypothetical protein
2469	 31.88	0	2672354..2672422	-	22	161510735	-	USA300HOU_2529	-	hypothetical protein
2470	 36.57	+1	2672422..2674521	-	699	161510736	ptsG	USA300HOU_2530	-	PTS family glucose/glucoside (glc) porter component IIABC
2471	 34.43	0	2674789..2676528	-	579	161510737	ilvB2	USA300HOU_2531	-	pyruvate oxidase
2472	 34.06	0	2676575..2677264	-	229	161510738	-	USA300HOU_2532	-	hypothetical protein
2473	 32.32	0	2677257..2677652	-	131	161510739	-	USA300HOU_2533	-	hypothetical protein
2474	 33.22	0	2677865..2678752	-	295	161510740	-	USA300HOU_2534	-	LysR family transcriptional regulator
2475	 35.16	0	2678910..2679128	+	72	161510741	-	USA300HOU_2535	-	hypothetical protein
2476	 34.72	0	2679517..2679948	+	143	161510742	-	USA300HOU_2536	-	secretory antigen
2477	 25.93	-1	2680480..2680614	-	44	161510743	-	USA300HOU_2537	-	hypothetical protein
2478	 25.19	-1	2680708..2680965	-	85	161510744	-	USA300HOU_2538	-	hypothetical protein
2479	 38.89	+1	2681544..2682821	-	425	161510745	-	USA300HOU_2539	-	hydroxymethylglutaryl-CoA reductase
2480	 36.93	+1	2683075..2684241	+	388	161510746	mvaS	USA300HOU_2540	-	hydroxymethylglutaryl-CoA synthase
2481	 40.42	+2	2684411..2684932	-	173	161510747	ogt	USA300HOU_2541	-	methylated-DNA--[protein]-cysteine S-methyltransferase
2482	 34.71	0	2685341..2687446	+	701	161510748	clp	USA300HOU_2542	-	endopeptidase Clp
2483	 32.22	0	2687515..2687694	-	59	161510749	-	USA300HOU_2543	-	hypothetical protein
2484	 34.64	0	2687698..2689692	-	664	161510750	-	USA300HOU_2544	-	FeoB family ferrous iron (Fe2+) uptake protein
2485	 30.70	0	2689704..2689931	-	75	161510751	-	USA300HOU_2545	-	hypothetical protein
2486	 33.57	0	2690147..2692636	-	829	161510752	-	USA300HOU_2546	-	resistance-nodulation-cell division acriflavin:proton (H+) antiporter
2487	 30.60	0	2692781..2693329	+	182	161510753	-	USA300HOU_2547	-	TetR family transcriptional regulator
2488	 27.98	-1	2693406..2693573	-	55	161510754	-	USA300HOU_2548	-	hypothetical protein
2489	 36.31	0	2693685..2695229	-	514	161510755	-	USA300HOU_2549	-	1-pyrroline-5-carboxylate dehydrogenase
2490	 36.50	+1	2695419..2696018	-	199	161510756	-	USA300HOU_2550	-	galactoside O-acetyltransferase
2491	 31.84	0	2696248..2696448	+	66	161510757	-	USA300HOU_2551	-	hypothetical protein
2492	 37.65	+1	2696688..2699096	+	802	161510758	copA	USA300HOU_2552	-	P-ATPase superfamily P-type ATPase copper (Cu2+) transporter
2493	 35.75	0	2699387..2699593	+	68	161510759	merP	USA300HOU_2553	-	MerTP family mercury (Hg2+) permease, binding protein MerP
2494	 36.05	0	2699683..2700711	-	342	161510760	-	USA300HOU_2554	-	D-lactate dehydrogenase
2495	 36.28	0	2700704..2701858	-	384	161510761	-	USA300HOU_2555	-	aminotransferase
2496	 35.39	0	2702285..2703793	-	502	161510762	crtN	USA300HOU_2556	-	squalene synthase
2497	 31.37	0	2703805..2704668	-	287	161510763	crtM	USA300HOU_2557	-	squalene desaturase
2498	 36.41	+1	2704705..2705841	-	378	161510764	-	USA300HOU_2558	-	glycosyltransferase
2499	 35.41	0	2705838..2707331	-	497	161510765	-	USA300HOU_2559	-	phytoene dehydrogenase
2500	 29.32	0	2707324..2707821	-	165	161510766	-	USA300HOU_2560	-	hypothetical protein
2501	 36.72	+1	2707987..2708754	-	255	161510767	-	USA300HOU_2561	-	secretory antigen
2502	 33.39	0	2709115..2710926	-	603	161510768	-	USA300HOU_2562	-	acetyltransferase
2503	 25.36	-1	2711437..2711925	-	162	161510769	-	USA300HOU_2563	-	GNAT family acetyltransferase
2504	 41.60	+2	2712201..2712902	-	233	161510770	isaA	USA300HOU_2564	-	immunodominant antigen A
2505	 36.27	0	2713510..2714565	-	351	161510771	-	USA300HOU_2565	-	hypothetical protein
2506	 32.67	0	2714942..2715544	+	200	161510772	-	USA300HOU_2566	-	TetR family transcriptional regulator
2507	 35.33	0	2715742..2716242	+	166	161510773	-	USA300HOU_2567	-	hypothetical protein
2508	 32.90	0	2716462..2716692	+	76	161510774	-	USA300HOU_2568	-	hypothetical protein
2509	 34.66	0	2716842..2717219	-	125	161510775	-	USA300HOU_2569	-	lactoylglutatione lyase
2510	 32.60	0	2717236..2718057	-	273	161510776	-	USA300HOU_2570	-	hypothetical protein
2511	 34.33	0	2718077..2718376	-	99	161510777	-	USA300HOU_2571	-	hypothetical protein
2512	 31.72	0	2718507..2719064	+	185	161510778	-	USA300HOU_2572	-	TetR family transcriptional regulator
2513	 38.01	+1	2719057..2719761	+	234	161510779	-	USA300HOU_2573	-	dehydrogenase
2514	 34.42	0	2719859..2720869	+	336	161510780	-	USA300HOU_2574	-	hypothetical protein
2515	 37.67	+1	2720889..2721719	+	276	161510781	-	USA300HOU_2575	-	hydrolase
2516	 35.24	0	2721866..2722756	-	296	161510782	cobW3	USA300HOU_2576	-	cobalamin (vitamin B12) biosynthesis protein
2517	 34.60	0	2722854..2724194	-	446	161510783	-	USA300HOU_2577	-	FeoB family ferrous iron (Fe2+) uptake protein
2518	 35.32	0	2724188..2725294	-	368	161510784	-	USA300HOU_2578	-	hypothetical protein
2519	 26.94	-1	2725628..2725924	-	98	161510785	-	USA300HOU_2579	-	hypothetical protein
2520	 36.86	+1	2725912..2726280	-	122	161510786	-	USA300HOU_2580	-	hypothetical protein
2521	 32.97	0	2726295..2726573	-	92	161510787	-	USA300HOU_2581	-	hypothetical protein
2522	 38.52	+1	2726915..2727781	-	288	161510788	-	USA300HOU_2582	-	hypothetical protein
2523	 35.49	0	2727999..2729063	+	354	161510789	pyrD	USA300HOU_2583	-	dihydroorotate dehydrogenase 2
2524	 30.43	0	2729218..2729493	+	91	161510790	-	USA300HOU_2584	-	hypothetical protein
2525	 24.56	-2	2729530..2729643	-	37	161510791	-	USA300HOU_2585	-	hypothetical protein
2526	 33.75	0	2729679..2730401	-	240	161510792	-	USA300HOU_2586	-	hypothetical protein
2527	 36.22	0	2730755..2731204	+	149	161510793	-	USA300HOU_2587	-	hypothetical protein
2528	 30.44	0	2731285..2731872	-	195	161510794	-	USA300HOU_2588	-	transcriptional regulator
2529	 35.35	0	2731850..2731948	-	32	161510795	-	USA300HOU_2589	-	hypothetical protein
2530	 36.60	+1	2732005..2733687	+	560	161510796	-	USA300HOU_2590	-	peptidase
2531	 33.06	0	2733816..2734187	-	123	161510797	panD	USA300HOU_2591	-	aspartate alpha-decarboxylase
2532	 36.27	0	2734201..2735052	-	283	161510798	panC	USA300HOU_2592	-	pantoate--beta-alanine ligase
2533	 36.26	0	2735045..2735863	-	272	161510799	panB	USA300HOU_2593	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2534	 37.86	+1	2735936..2736796	+	286	161510800	panE2	USA300HOU_2594	-	2-dehydropantoate 2-reductase
2535	 37.41	+1	2739510..2740958	+	482	161510801	-	USA300HOU_2595	-	APC family amino acid-polyamine-organocation transporter
2536	 37.99	+1	2741039..2742412	-	457	161510802	-	USA300HOU_2596	-	4-aminobutyrate aminotransferase
2537	 35.42	0	2742402..2742497	-	31	161510803	-	USA300HOU_2597	-	hypothetical protein
2538	 27.82	-1	2742634..2743050	+	138	161510804	-	USA300HOU_2598	-	hypothetical protein
2539	 33.67	0	2743173..2744063	+	296	161510805	fdaB	USA300HOU_2599	-	fructose-1,6-bisphosphate aldolase
2540	 36.27	0	2744256..2745752	-	498	161510806	mqo2	USA300HOU_2600	-	malate:quinone oxidoreductase
2541	 26.26	-1	2746081..2746377	+	98	161510807	-	USA300HOU_2601	-	hypothetical protein
2542	 36.46	+1	2746437..2748035	-	532	161510808	acsA2	USA300HOU_2602	-	acetate--CoA ligase
2543	 31.08	0	2748229..2748672	-	147	161510809	-	USA300HOU_2603	-	hypothetical protein
2544	 27.70	-1	2748953..2749165	-	70	161510810	-	USA300HOU_2604	-	hypothetical protein
2545	 38.83	+1	2749443..2751152	-	569	161510811	betA	USA300HOU_2605	-	choline dehydrogenase
2546	 36.96	+1	2751413..2752903	-	496	161510812	betB	USA300HOU_2606	-	betaine-aldehyde dehydrogenase
2547	 21.88	-2	2752972..2753067	+	31	161510813	-	USA300HOU_2607	-	hypothetical protein
2548	 34.92	0	2753153..2753719	+	188	161510814	-	USA300HOU_2608	-	hypothetical protein
2549	 32.90	0	2753907..2754593	-	228	161510815	-	USA300HOU_2609	-	metallo-beta-lactamase
2550	 35.61	0	2754857..2756479	-	540	161510816	betT	USA300HOU_2610	-	BCCT family betaine/carnitine/choline transporter
2551	 21.60	-2	2756611..2756772	+	53	161510817	-	USA300HOU_2611	-	hypothetical protein
2552	 28.83	-1	2756788..2756898	-	36	161510818	-	USA300HOU_2612	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.