IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2411	 27.48	-1	2606468..2606689	+	73	161510677	-	USA300HOU_2468	-	hypothetical protein
2412	 29.08	0	2606781..2607203	-	140	161510678	-	USA300HOU_2469	-	hypothetical protein
2413	 37.07	+1	2607454..2608149	-	231	161510679	-	USA300HOU_2470	-	dehydrogenase
2414	 35.94	0	2608979..2609170	-	63	161510680	-	USA300HOU_2471	-	hypothetical protein
2415	 29.27	0	2609605..2609727	+	40	161510681	-	USA300HOU_2472	-	hypothetical protein
2416	 31.45	0	2609731..2610525	-	264	161510682	-	USA300HOU_2473	-	lipoprotein
2417	 31.94	0	2611061..2611348	-	95	161510683	-	USA300HOU_2474	-	hypothetical protein
2418	 28.75	-1	2611351..2611677	-	108	161510684	-	USA300HOU_2475	-	hypothetical protein
2419	 31.40	0	2613894..2614670	-	258	161510685	-	USA300HOU_2478	-	lipoprotein
2420	 21.88	-2	2614770..2614865	+	31	161510686	-	USA300HOU_2479	-	hypothetical protein
2421	 28.06	-1	2614973..2617834	-	953	161510687	-	USA300HOU_2480	-	helicase
2422	 31.55	0	2617836..2618228	-	130	161510688	-	USA300HOU_2481	-	hydrolase
2423	 34.00	0	2618345..2620153	+	602	161510689	-	USA300HOU_2482	-	bifunctional phosphoglucomutase/phosphomannomutase
2424	 31.46	0	2620437..2620703	+	88	161510690	-	USA300HOU_2483	-	hypothetical protein
2425	 28.16	-1	2620847..2621155	+	102	161510691	-	USA300HOU_2484	-	hypothetical protein
2426	 29.82	0	2621477..2622670	-	397	161510692	-	USA300HOU_2485	-	major facilitator superfamily cation symporter
2427	 22.78	-2	2626706..2627065	-	119	161510693	sarT	USA300HOU_2487	-	staphylococcal accessory regulator T
2428	 24.87	-2	2627387..2628130	+	247	161510694	sarU	USA300HOU_2488	-	staphylococcal accessory regulator U
2429	 36.56	+1	2628341..2629207	-	288	161510695	galU	USA300HOU_2489	-	UTP--glucose-1-phosphate uridylyltransferase
2430	 36.34	0	2629387..2632209	-	940	161510696	fnbB	USA300HOU_2490	-	fibronectin-binding protein B
2431	 36.31	0	2632891..2635947	-	1018	161510697	fnbA	USA300HOU_2491	-	fibronectin-binding protein A
2432	 36.42	+1	2636416..2637774	-	452	161510698	gntP	USA300HOU_2492	-	GntP family gluconate:proton (H+) symporter
2433	 37.71	+1	2637891..2639444	-	517	161510699	gntK	USA300HOU_2493	-	gluconokinase
2434	 35.54	0	2639468..2640148	-	226	161510700	gntR	USA300HOU_2494	-	gluconate operon transcriptional repressor
2435	 34.12	0	2640302..2641066	-	254	161510701	-	USA300HOU_2495	-	MerR family transcriptional regulator
2436	 32.32	0	2641231..2641923	-	230	161510702	-	USA300HOU_2496	-	hypothetical protein
2437	 34.15	0	2642154..2642642	-	162	161510703	-	USA300HOU_2497	-	hypothetical protein
2438	 32.73	0	2642709..2644532	-	607	161510704	-	USA300HOU_2498	-	hypothetical protein
2439	 36.15	0	2645010..2646287	-	425	161510705	-	USA300HOU_2499	-	major facilitator superfamily glucarate:cation symporter
2440	 32.52	0	2646834..2647445	+	203	161510706	-	USA300HOU_2500	-	alkaline phosphatase
2441	 28.78	-1	2647542..2648705	-	387	161510707	-	USA300HOU_2501	-	major facilitator transporter
2442	 24.52	-2	2648698..2649162	-	154	161510708	-	USA300HOU_2502	-	MarR family transcriptional regulator
2443	 31.18	0	2649590..2650285	+	231	161510709	-	USA300HOU_2503	-	ABC transporter ATP-binding protein
2444	 26.46	-1	2650287..2651057	+	256	161510710	-	USA300HOU_2504	-	ABC transporter ATP-binding protein
2445	 33.59	0	2651430..2653394	+	654	161510711	-	USA300HOU_2505	-	fructose-bisphosphatase
2446	 33.33	0	2653467..2653619	+	50	161510712	-	USA300HOU_2506	-	hypothetical protein
2447	 35.74	0	2653738..2654817	+	359	161510713	-	USA300HOU_2507	-	hypothetical protein
2448	 36.70	+1	2654922..2655515	-	197	161510714	-	USA300HOU_2508	-	hydrolase
2449	 36.12	0	2655537..2656505	-	322	161510715	-	USA300HOU_2509	-	lactoylglutatione lyase
2450	 35.17	0	2656583..2657017	-	144	161510716	-	USA300HOU_2510	-	MarR family transcriptional regulator
2451	 37.55	+1	2657699..2658505	+	268	161510717	-	USA300HOU_2511	-	dioxygenase
2452	 37.25	+1	2658625..2659287	-	220	161510718	-	USA300HOU_2512	-	FMN reductase
2453	 34.54	0	2659566..2660558	+	330	161510719	ddh	USA300HOU_2513	-	D-lactate dehydrogenase
2454	 34.21	0	2660807..2661607	-	266	161510720	-	USA300HOU_2514	-	HAD family phosphatase
2455	 24.84	-2	2661928..2662563	+	211	161510721	-	USA300HOU_2515	-	ABC transporter ATP-binding protein
2456	 28.01	-1	2662569..2663300	+	243	161510722	-	USA300HOU_2516	-	hypothetical protein
2457	 32.85	0	2663460..2664080	-	206	161510723	srtA	USA300HOU_2517	-	sortase
2458	 36.99	+1	2664274..2664765	+	163	161510724	-	USA300HOU_2518	-	acetyltransferase
2459	 33.33	0	2665243..2665434	+	63	161510725	-	USA300HOU_2519	-	hypothetical protein
2460	 30.30	0	2665435..2665533	-	32	161510726	-	USA300HOU_2520	-	hypothetical protein
2461	 41.11	+2	2665552..2666451	-	299	161510727	sdhA2	USA300HOU_2521	-	L-serine ammonia-lyase alpha subunit
2462	 32.75	0	2666465..2667145	-	226	161510728	sdhB2	USA300HOU_2522	-	L-serine ammonia-lyase beta subunit
2463	 37.45	+1	2667148..2668191	-	347	161510729	-	USA300HOU_2523	-	transcriptional regulator
2464	 34.68	0	2669101..2670063	+	320	161510730	-	USA300HOU_2524	-	hypothetical protein
2465	 37.25	+1	2670145..2671113	-	322	161510731	-	USA300HOU_2525	-	hypothetical protein
2466	 36.23	0	2671246..2671590	-	114	161510732	-	USA300HOU_2526	-	hypothetical protein
2467	 36.98	+1	2671632..2672042	-	136	161510733	-	USA300HOU_2527	-	hypothetical protein
2468	 28.43	-1	2672107..2672208	+	33	161510734	-	USA300HOU_2528	-	hypothetical protein
2469	 31.88	0	2672354..2672422	-	22	161510735	-	USA300HOU_2529	-	hypothetical protein
2470	 36.57	+1	2672422..2674521	-	699	161510736	ptsG	USA300HOU_2530	-	PTS family glucose/glucoside (glc) porter component IIABC
2471	 34.43	0	2674789..2676528	-	579	161510737	ilvB2	USA300HOU_2531	-	pyruvate oxidase
2472	 34.06	0	2676575..2677264	-	229	161510738	-	USA300HOU_2532	-	hypothetical protein
2473	 32.32	0	2677257..2677652	-	131	161510739	-	USA300HOU_2533	-	hypothetical protein
2474	 33.22	0	2677865..2678752	-	295	161510740	-	USA300HOU_2534	-	LysR family transcriptional regulator
2475	 35.16	0	2678910..2679128	+	72	161510741	-	USA300HOU_2535	-	hypothetical protein
2476	 34.72	0	2679517..2679948	+	143	161510742	-	USA300HOU_2536	-	secretory antigen
2477	 25.93	-1	2680480..2680614	-	44	161510743	-	USA300HOU_2537	-	hypothetical protein
2478	 25.19	-1	2680708..2680965	-	85	161510744	-	USA300HOU_2538	-	hypothetical protein
2479	 38.89	+1	2681544..2682821	-	425	161510745	-	USA300HOU_2539	-	hydroxymethylglutaryl-CoA reductase
2480	 36.93	+1	2683075..2684241	+	388	161510746	mvaS	USA300HOU_2540	-	hydroxymethylglutaryl-CoA synthase
2481	 40.42	+2	2684411..2684932	-	173	161510747	ogt	USA300HOU_2541	-	methylated-DNA--[protein]-cysteine S-methyltransferase
2482	 34.71	0	2685341..2687446	+	701	161510748	clp	USA300HOU_2542	-	endopeptidase Clp
2483	 32.22	0	2687515..2687694	-	59	161510749	-	USA300HOU_2543	-	hypothetical protein
2484	 34.64	0	2687698..2689692	-	664	161510750	-	USA300HOU_2544	-	FeoB family ferrous iron (Fe2+) uptake protein
2485	 30.70	0	2689704..2689931	-	75	161510751	-	USA300HOU_2545	-	hypothetical protein
2486	 33.57	0	2690147..2692636	-	829	161510752	-	USA300HOU_2546	-	resistance-nodulation-cell division acriflavin:proton (H+) antiporter
2487	 30.60	0	2692781..2693329	+	182	161510753	-	USA300HOU_2547	-	TetR family transcriptional regulator
2488	 27.98	-1	2693406..2693573	-	55	161510754	-	USA300HOU_2548	-	hypothetical protein
2489	 36.31	0	2693685..2695229	-	514	161510755	-	USA300HOU_2549	-	1-pyrroline-5-carboxylate dehydrogenase
2490	 36.50	+1	2695419..2696018	-	199	161510756	-	USA300HOU_2550	-	galactoside O-acetyltransferase
2491	 31.84	0	2696248..2696448	+	66	161510757	-	USA300HOU_2551	-	hypothetical protein
2492	 37.65	+1	2696688..2699096	+	802	161510758	copA	USA300HOU_2552	-	P-ATPase superfamily P-type ATPase copper (Cu2+) transporter
2493	 35.75	0	2699387..2699593	+	68	161510759	merP	USA300HOU_2553	-	MerTP family mercury (Hg2+) permease, binding protein MerP
2494	 36.05	0	2699683..2700711	-	342	161510760	-	USA300HOU_2554	-	D-lactate dehydrogenase
2495	 36.28	0	2700704..2701858	-	384	161510761	-	USA300HOU_2555	-	aminotransferase
2496	 35.39	0	2702285..2703793	-	502	161510762	crtN	USA300HOU_2556	-	squalene synthase
2497	 31.37	0	2703805..2704668	-	287	161510763	crtM	USA300HOU_2557	-	squalene desaturase
2498	 36.41	+1	2704705..2705841	-	378	161510764	-	USA300HOU_2558	-	glycosyltransferase
2499	 35.41	0	2705838..2707331	-	497	161510765	-	USA300HOU_2559	-	phytoene dehydrogenase
2500	 29.32	0	2707324..2707821	-	165	161510766	-	USA300HOU_2560	-	hypothetical protein
2501	 36.72	+1	2707987..2708754	-	255	161510767	-	USA300HOU_2561	-	secretory antigen
2502	 33.39	0	2709115..2710926	-	603	161510768	-	USA300HOU_2562	-	acetyltransferase
2503	 25.36	-1	2711437..2711925	-	162	161510769	-	USA300HOU_2563	-	GNAT family acetyltransferase
2504	 41.60	+2	2712201..2712902	-	233	161510770	isaA	USA300HOU_2564	-	immunodominant antigen A
2505	 36.27	0	2713510..2714565	-	351	161510771	-	USA300HOU_2565	-	hypothetical protein
2506	 32.67	0	2714942..2715544	+	200	161510772	-	USA300HOU_2566	-	TetR family transcriptional regulator
2507	 35.33	0	2715742..2716242	+	166	161510773	-	USA300HOU_2567	-	hypothetical protein
2508	 32.90	0	2716462..2716692	+	76	161510774	-	USA300HOU_2568	-	hypothetical protein
2509	 34.66	0	2716842..2717219	-	125	161510775	-	USA300HOU_2569	-	lactoylglutatione lyase
2510	 32.60	0	2717236..2718057	-	273	161510776	-	USA300HOU_2570	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.