IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2349	 31.90	0	2544722..2545699	+	325	161510615	hlgB	USA300HOU_2405	-	gamma hemolysin component B
2350	 29.49	0	2545751..2546218	-	155	161510616	-	USA300HOU_2406	-	hypothetical protein
2351	 33.63	0	2546229..2546906	-	225	161510617	bioW	USA300HOU_2407	-	6-carboxyhexanoate--CoA ligase
2352	 30.38	0	2546932..2548047	-	371	161510618	bioF	USA300HOU_2408	-	8-amino-7-oxononanoate synthase
2353	 33.23	0	2548025..2549032	-	335	161510619	bioB	USA300HOU_2409	-	biotin synthase
2354	 33.70	0	2549034..2550392	-	452	161510620	bioA	USA300HOU_2410	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
2355	 32.02	0	2550370..2551056	-	228	161510621	bioD	USA300HOU_2411	-	dethiobiotin synthase
2356	 29.93	0	2551508..2553241	-	577	161510622	-	USA300HOU_2412	-	ABC transporter ATP-binding protein
2357	 31.29	0	2553266..2555029	-	587	161510623	-	USA300HOU_2413	-	ABC transporter ATP-binding protein
2358	 28.70	-1	2555523..2555630	-	35	161510624	-	USA300HOU_2414	-	hypothetical protein
2359	 34.26	0	2555657..2555764	-	35	161510625	-	USA300HOU_2415	-	hypothetical protein
2360	 27.91	-1	2555898..2556284	-	128	161510626	-	USA300HOU_2416	-	hypothetical protein
2361	 38.33	+1	2556381..2556440	-	19	161510627	-	USA300HOU_2417	-	hypothetical protein
2362	 38.50	+1	2556552..2557694	+	380	161510628	glxK	USA300HOU_2418	-	glycerate kinase
2363	 31.52	0	2557754..2558413	+	219	161510629	-	USA300HOU_2419	-	hypothetical protein
2364	 34.98	0	2558595..2559806	+	403	161510630	bcr	USA300HOU_2420	-	major facilitator superfamily bicyclomycin:cation symporter
2365	 35.65	0	2559929..2560402	-	157	161510631	-	USA300HOU_2421	-	hypothetical protein
2366	 35.92	0	2560515..2561171	+	218	161510632	-	USA300HOU_2422	-	hypothetical protein
2367	 34.45	0	2561234..2562040	-	268	161510633	-	USA300HOU_2423	-	hypothetical protein
2368	 34.96	0	2562326..2563735	+	469	161510634	-	USA300HOU_2424	-	APC family amino acid-polyamine-organocation transporter
2369	 32.37	0	2563873..2565951	+	692	161510635	-	USA300HOU_2425	-	CPA1 family monovalent cation:proton (H+) antiporter-1
2370	 23.53	-2	2566030..2566131	-	33	161510636	-	USA300HOU_2426	-	hypothetical protein
2371	 34.48	0	2566091..2567920	-	609	161510637	-	USA300HOU_2427	-	APC family amino acid-polyamine-organocation transporter
2372	 22.86	-2	2568014..2568118	-	34	161510638	-	USA300HOU_2428	-	hypothetical protein
2373	 31.53	0	2568152..2569648	+	498	161510639	fmtA	USA300HOU_2429	-	FmtA protein
2374	 36.03	0	2569740..2570591	-	283	161510640	-	USA300HOU_2430	-	epimerase/dehydratase
2375	 32.32	0	2570747..2570944	+	65	161510641	-	USA300HOU_2431	-	hypothetical protein
2376	 35.58	0	2570913..2571848	-	311	161510642	panE1	USA300HOU_2432	-	2-dehydropantoate 2-reductase
2377	 34.33	0	2572074..2573474	-	466	161510643	-	USA300HOU_2433	-	major facilitator transporter
2378	 35.49	0	2573768..2574463	-	231	161510644	opuCD	USA300HOU_2434	-	glycine betaine/L-proline ABC transporter membrane protein
2379	 35.35	0	2574463..2575404	-	313	161510645	opuBC	USA300HOU_2435	-	glycine betaine/L-proline ABC transporter binding protein
2380	 36.01	0	2575421..2576056	-	211	161510646	-	USA300HOU_2436	-	glycine betaine/choline ABC transporter membrane protein
2381	 36.10	0	2576053..2577279	-	408	161510647	-	USA300HOU_2437	-	glycine betaine/choline ABC transporter ATP-binding protein
2382	 34.17	0	2577606..2577725	-	39	161510648	-	USA300HOU_2438	-	hypothetical protein
2383	 32.17	0	2577949..2578548	-	199	161510649	-	USA300HOU_2439	-	hypothetical protein
2384	 36.26	0	2578728..2580365	+	545	161510650	-	USA300HOU_2440	-	APC family amino acid-polyamine-organocation transporter
2385	 34.81	0	2580973..2582325	+	450	161510651	pnbA	USA300HOU_2441	-	carboxylesterase
2386	 34.86	0	2582387..2583565	-	392	161510652	-	USA300HOU_2442	-	major facilitator superfamily chloramphenicol:cation symporter
2387	 35.26	0	2583970..2584746	-	258	161510653	-	USA300HOU_2443	-	ABC transporter ATP-binding protein
2388	 34.69	0	2584739..2585401	-	220	161510654	-	USA300HOU_2444	-	ABC transporter ATP-binding protein
2389	 37.70	+1	2585649..2586725	-	358	161510655	pepA	USA300HOU_2445	-	M42 family glutamyl aminopeptidase
2390	 28.09	-1	2587080..2587346	-	88	161510656	-	USA300HOU_2446	-	hypothetical protein
2391	 28.29	-1	2587346..2587603	-	85	161510657	-	USA300HOU_2447	-	hypothetical protein
2392	 29.74	0	2587709..2587903	-	64	161510658	-	USA300HOU_2448	-	hypothetical protein
2393	 28.29	-1	2587962..2588417	+	151	161510659	-	USA300HOU_2449	-	hypothetical protein
2394	 35.74	0	2588585..2590162	-	525	161510660	gltB2	USA300HOU_2450	-	glutamate synthase (NADPH)
2395	 21.51	-2	2590199..2590291	+	30	161510661	-	USA300HOU_2451	-	hypothetical protein
2396	 30.80	0	2590357..2591106	+	249	161510662	-	USA300HOU_2452	-	hypothetical protein
2397	 37.10	+1	2591330..2592523	-	397	161510663	-	USA300HOU_2453	-	major facilitator transporter
2398	 35.07	0	2592535..2593284	-	249	161510664	-	USA300HOU_2454	-	ABC transporter ATP-binding protein
2399	 35.17	0	2593277..2594092	-	271	161510665	-	USA300HOU_2455	-	oligopeptide ABC transporter ATP-binding protein
2400	 35.75	0	2594089..2594958	-	289	161510666	-	USA300HOU_2456	-	oligopeptide ABC transporter membrane protein
2401	 33.87	0	2594955..2595890	-	311	161510667	-	USA300HOU_2457	-	oligopeptide ABC transporter membrane protein
2402	 34.83	0	2595903..2597501	-	532	161510668	-	USA300HOU_2458	-	oligopeptide ABC transporter substrate-binding protein
2403	 36.10	0	2597644..2598945	-	433	161510669	-	USA300HOU_2459	-	hypothetical protein
2404	 33.82	0	2598938..2599756	-	272	161510670	-	USA300HOU_2460	-	hypothetical protein
2405	 35.64	0	2599767..2600588	-	273	161510671	-	USA300HOU_2461	-	hypothetical protein
2406	 25.68	-1	2601455..2601820	-	121	161510672	-	USA300HOU_2462	-	hypothetical protein
2407	 36.32	0	2603134..2604672	+	512	161510673	-	USA300HOU_2464	-	p-aminobenzoyl-glutamate transporter
2408	 27.90	-1	2604784..2605206	-	140	161510674	-	USA300HOU_2465	-	hypothetical protein
2409	 30.24	0	2605658..2606077	-	139	161510675	-	USA300HOU_2466	-	hypothetical protein
2410	 29.05	0	2606095..2606514	-	139	161510676	-	USA300HOU_2467	-	hypothetical protein
2411	 27.48	-1	2606468..2606689	+	73	161510677	-	USA300HOU_2468	-	hypothetical protein
2412	 29.08	0	2606781..2607203	-	140	161510678	-	USA300HOU_2469	-	hypothetical protein
2413	 37.07	+1	2607454..2608149	-	231	161510679	-	USA300HOU_2470	-	dehydrogenase
2414	 35.94	0	2608979..2609170	-	63	161510680	-	USA300HOU_2471	-	hypothetical protein
2415	 29.27	0	2609605..2609727	+	40	161510681	-	USA300HOU_2472	-	hypothetical protein
2416	 31.45	0	2609731..2610525	-	264	161510682	-	USA300HOU_2473	-	lipoprotein
2417	 31.94	0	2611061..2611348	-	95	161510683	-	USA300HOU_2474	-	hypothetical protein
2418	 28.75	-1	2611351..2611677	-	108	161510684	-	USA300HOU_2475	-	hypothetical protein
2419	 31.40	0	2613894..2614670	-	258	161510685	-	USA300HOU_2478	-	lipoprotein
2420	 21.88	-2	2614770..2614865	+	31	161510686	-	USA300HOU_2479	-	hypothetical protein
2421	 28.06	-1	2614973..2617834	-	953	161510687	-	USA300HOU_2480	-	helicase
2422	 31.55	0	2617836..2618228	-	130	161510688	-	USA300HOU_2481	-	hydrolase
2423	 34.00	0	2618345..2620153	+	602	161510689	-	USA300HOU_2482	-	bifunctional phosphoglucomutase/phosphomannomutase
2424	 31.46	0	2620437..2620703	+	88	161510690	-	USA300HOU_2483	-	hypothetical protein
2425	 28.16	-1	2620847..2621155	+	102	161510691	-	USA300HOU_2484	-	hypothetical protein
2426	 29.82	0	2621477..2622670	-	397	161510692	-	USA300HOU_2485	-	major facilitator superfamily cation symporter
2427	 22.78	-2	2626706..2627065	-	119	161510693	sarT	USA300HOU_2487	-	staphylococcal accessory regulator T
2428	 24.87	-2	2627387..2628130	+	247	161510694	sarU	USA300HOU_2488	-	staphylococcal accessory regulator U
2429	 36.56	+1	2628341..2629207	-	288	161510695	galU	USA300HOU_2489	-	UTP--glucose-1-phosphate uridylyltransferase
2430	 36.34	0	2629387..2632209	-	940	161510696	fnbB	USA300HOU_2490	-	fibronectin-binding protein B
2431	 36.31	0	2632891..2635947	-	1018	161510697	fnbA	USA300HOU_2491	-	fibronectin-binding protein A
2432	 36.42	+1	2636416..2637774	-	452	161510698	gntP	USA300HOU_2492	-	GntP family gluconate:proton (H+) symporter
2433	 37.71	+1	2637891..2639444	-	517	161510699	gntK	USA300HOU_2493	-	gluconokinase
2434	 35.54	0	2639468..2640148	-	226	161510700	gntR	USA300HOU_2494	-	gluconate operon transcriptional repressor
2435	 34.12	0	2640302..2641066	-	254	161510701	-	USA300HOU_2495	-	MerR family transcriptional regulator
2436	 32.32	0	2641231..2641923	-	230	161510702	-	USA300HOU_2496	-	hypothetical protein
2437	 34.15	0	2642154..2642642	-	162	161510703	-	USA300HOU_2497	-	hypothetical protein
2438	 32.73	0	2642709..2644532	-	607	161510704	-	USA300HOU_2498	-	hypothetical protein
2439	 36.15	0	2645010..2646287	-	425	161510705	-	USA300HOU_2499	-	major facilitator superfamily glucarate:cation symporter
2440	 32.52	0	2646834..2647445	+	203	161510706	-	USA300HOU_2500	-	alkaline phosphatase
2441	 28.78	-1	2647542..2648705	-	387	161510707	-	USA300HOU_2501	-	major facilitator transporter
2442	 24.52	-2	2648698..2649162	-	154	161510708	-	USA300HOU_2502	-	MarR family transcriptional regulator
2443	 31.18	0	2649590..2650285	+	231	161510709	-	USA300HOU_2503	-	ABC transporter ATP-binding protein
2444	 26.46	-1	2650287..2651057	+	256	161510710	-	USA300HOU_2504	-	ABC transporter ATP-binding protein
2445	 33.59	0	2651430..2653394	+	654	161510711	-	USA300HOU_2505	-	fructose-bisphosphatase
2446	 33.33	0	2653467..2653619	+	50	161510712	-	USA300HOU_2506	-	hypothetical protein
2447	 35.74	0	2653738..2654817	+	359	161510713	-	USA300HOU_2507	-	hypothetical protein
2448	 36.70	+1	2654922..2655515	-	197	161510714	-	USA300HOU_2508	-	hydrolase
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.