IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2306	 29.84	0	2496951..2497895	+	314	161510572	-	USA300HOU_2361	-	MIT family metal ion transporter CorA
2307	 35.34	0	2497981..2499423	-	480	161510573	scrA	USA300HOU_2362	-	PTS family sucrose porter component IIBC
2308	 30.73	0	2499606..2499989	+	127	161510574	-	USA300HOU_2363	-	hypothetical protein
2309	 28.54	-1	2501477..2503582	+	701	161510575	-	USA300HOU_2364	-	AraC transcriptional regulator
2310	 27.17	-1	2504340..2504696	+	118	161510576	-	USA300HOU_2365	-	hypothetical protein
2311	 32.94	0	2505100..2506377	-	425	161510577	gltT	USA300HOU_2366	-	DAACS family dicarboxylate/amino acid:sodium or proton symporter
2312	 27.32	-1	2506559..2506924	-	121	161510578	-	USA300HOU_2367	-	hypothetical protein
2313	 28.41	-1	2507322..2507768	+	148	161510579	-	USA300HOU_2368	-	transcriptional regulator
2314	 33.93	0	2508519..2509688	-	389	161510580	narK	USA300HOU_2369	-	major facilitator superfamily nitrate:nitrite antiporter
2315	 20.83	-2	2509759..2509878	+	39	161510581	-	USA300HOU_2370	-	hypothetical protein
2316	 27.94	-1	2510951..2511691	+	246	161510582	-	USA300HOU_2372	-	MerR family transcriptional regulator
2317	 33.94	0	2511949..2512602	-	217	161510583	-	USA300HOU_2373	-	transcriptional regulator
2318	 33.62	0	2512625..2513659	-	344	161510584	-	USA300HOU_2374	-	sensor histidine kinase
2319	 33.11	0	2513683..2514135	-	150	161510585	-	USA300HOU_2375	-	hypothetical protein
2320	 32.60	0	2514155..2514832	-	225	161510586	narI	USA300HOU_2376	-	nitrate reductase gamma subunit
2321	 30.63	0	2514825..2515415	-	196	161510587	narJ	USA300HOU_2377	-	nitrate reductase delta subunit
2322	 38.08	+1	2515393..2516952	-	519	161510588	narH	USA300HOU_2378	-	nitrate reductase beta subunit
2323	 38.24	+1	2516942..2520631	-	1229	161510589	narG	USA300HOU_2379	-	nitrate reductase alpha subunit
2324	 37.22	+1	2520940..2521917	-	325	161510590	hemX	USA300HOU_2380	-	uroporphyrin-III C-methyltransferase
2325	 36.19	0	2521908..2522222	-	104	161510591	nirD	USA300HOU_2381	-	nitrite reductase (NAD(P)H) small subunit
2326	 36.41	+1	2522226..2524631	-	801	161510592	nirB	USA300HOU_2382	-	nitrite reductase (NAD(P)H) large subunit
2327	 35.79	0	2524697..2525428	-	243	161510593	nirR	USA300HOU_2383	-	transcriptional regulator NirR
2328	 36.69	+1	2525658..2526194	-	178	161510594	-	USA300HOU_2384	-	GNAT family acetyltransferase
2329	 33.76	0	2526427..2527134	-	235	161510595	-	USA300HOU_2385	-	FNT family formate-nitrite transporter
2330	 31.85	0	2528387..2529937	-	516	161510596	-	USA300HOU_2386	-	ABC transporter ATP-binding protein
2331	 31.09	0	2530232..2530498	-	88	161510597	-	USA300HOU_2387	-	hypothetical protein
2332	 31.75	0	2530498..2530749	-	83	161510598	-	USA300HOU_2388	-	hypothetical protein
2333	 29.41	0	2530914..2531015	-	33	161510599	-	USA300HOU_2389	-	hypothetical protein
2334	 29.83	0	2531022..2531621	-	199	161510600	-	USA300HOU_2390	-	lipoprotein
2335	 31.17	0	2531640..2532008	-	122	161510601	-	USA300HOU_2391	-	lipoprotein
2336	 33.33	0	2532254..2533504	+	416	161510602	-	USA300HOU_2392	-	FemAB family peptidoglycan biosynthesis protein
2337	 34.43	0	2533601..2534332	-	243	161510603	-	USA300HOU_2393	-	ABC transporter ATP-binding protein
2338	 33.74	0	2534329..2535057	-	242	161510604	-	USA300HOU_2394	-	ABC transporter ATP-binding protein
2339	 32.05	0	2535029..2535808	-	259	161510605	-	USA300HOU_2395	-	amino acid ABC transporter ATP-binding protein
2340	 33.96	0	2535929..2537368	-	479	161510606	-	USA300HOU_2396	-	major facilitator superfamily multidrug :cation symporter
2341	 29.52	0	2537542..2537646	+	34	161510607	-	USA300HOU_2397	-	hypothetical protein
2342	 33.62	0	2537800..2538486	-	228	161510608	gpmA2	USA300HOU_2398	-	phosphoglycerate mutase
2343	 33.45	0	2538813..2539679	-	288	161510609	-	USA300HOU_2399	-	CDF family cation diffusion facilitator
2344	 27.62	-1	2540232..2540336	-	34	161510610	-	USA300HOU_2400	-	hypothetical protein
2345	 32.42	0	2540431..2541741	+	436	161510611	-	USA300HOU_2401	-	immunoglobulin G-binding protein SBI
2346	 32.30	0	2542241..2543206	+	321	161510612	hlgA	USA300HOU_2402	-	gamma-hemolysin component A
2347	 19.84	-2	2543270..2543395	+	41	161510613	-	USA300HOU_2403	-	hypothetical protein
2348	 32.91	0	2543773..2544720	+	315	161510614	hlgC	USA300HOU_2404	-	gamma hemolysin component C
2349	 31.90	0	2544722..2545699	+	325	161510615	hlgB	USA300HOU_2405	-	gamma hemolysin component B
2350	 29.49	0	2545751..2546218	-	155	161510616	-	USA300HOU_2406	-	hypothetical protein
2351	 33.63	0	2546229..2546906	-	225	161510617	bioW	USA300HOU_2407	-	6-carboxyhexanoate--CoA ligase
2352	 30.38	0	2546932..2548047	-	371	161510618	bioF	USA300HOU_2408	-	8-amino-7-oxononanoate synthase
2353	 33.23	0	2548025..2549032	-	335	161510619	bioB	USA300HOU_2409	-	biotin synthase
2354	 33.70	0	2549034..2550392	-	452	161510620	bioA	USA300HOU_2410	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
2355	 32.02	0	2550370..2551056	-	228	161510621	bioD	USA300HOU_2411	-	dethiobiotin synthase
2356	 29.93	0	2551508..2553241	-	577	161510622	-	USA300HOU_2412	-	ABC transporter ATP-binding protein
2357	 31.29	0	2553266..2555029	-	587	161510623	-	USA300HOU_2413	-	ABC transporter ATP-binding protein
2358	 28.70	-1	2555523..2555630	-	35	161510624	-	USA300HOU_2414	-	hypothetical protein
2359	 34.26	0	2555657..2555764	-	35	161510625	-	USA300HOU_2415	-	hypothetical protein
2360	 27.91	-1	2555898..2556284	-	128	161510626	-	USA300HOU_2416	-	hypothetical protein
2361	 38.33	+1	2556381..2556440	-	19	161510627	-	USA300HOU_2417	-	hypothetical protein
2362	 38.50	+1	2556552..2557694	+	380	161510628	glxK	USA300HOU_2418	-	glycerate kinase
2363	 31.52	0	2557754..2558413	+	219	161510629	-	USA300HOU_2419	-	hypothetical protein
2364	 34.98	0	2558595..2559806	+	403	161510630	bcr	USA300HOU_2420	-	major facilitator superfamily bicyclomycin:cation symporter
2365	 35.65	0	2559929..2560402	-	157	161510631	-	USA300HOU_2421	-	hypothetical protein
2366	 35.92	0	2560515..2561171	+	218	161510632	-	USA300HOU_2422	-	hypothetical protein
2367	 34.45	0	2561234..2562040	-	268	161510633	-	USA300HOU_2423	-	hypothetical protein
2368	 34.96	0	2562326..2563735	+	469	161510634	-	USA300HOU_2424	-	APC family amino acid-polyamine-organocation transporter
2369	 32.37	0	2563873..2565951	+	692	161510635	-	USA300HOU_2425	-	CPA1 family monovalent cation:proton (H+) antiporter-1
2370	 23.53	-2	2566030..2566131	-	33	161510636	-	USA300HOU_2426	-	hypothetical protein
2371	 34.48	0	2566091..2567920	-	609	161510637	-	USA300HOU_2427	-	APC family amino acid-polyamine-organocation transporter
2372	 22.86	-2	2568014..2568118	-	34	161510638	-	USA300HOU_2428	-	hypothetical protein
2373	 31.53	0	2568152..2569648	+	498	161510639	fmtA	USA300HOU_2429	-	FmtA protein
2374	 36.03	0	2569740..2570591	-	283	161510640	-	USA300HOU_2430	-	epimerase/dehydratase
2375	 32.32	0	2570747..2570944	+	65	161510641	-	USA300HOU_2431	-	hypothetical protein
2376	 35.58	0	2570913..2571848	-	311	161510642	panE1	USA300HOU_2432	-	2-dehydropantoate 2-reductase
2377	 34.33	0	2572074..2573474	-	466	161510643	-	USA300HOU_2433	-	major facilitator transporter
2378	 35.49	0	2573768..2574463	-	231	161510644	opuCD	USA300HOU_2434	-	glycine betaine/L-proline ABC transporter membrane protein
2379	 35.35	0	2574463..2575404	-	313	161510645	opuBC	USA300HOU_2435	-	glycine betaine/L-proline ABC transporter binding protein
2380	 36.01	0	2575421..2576056	-	211	161510646	-	USA300HOU_2436	-	glycine betaine/choline ABC transporter membrane protein
2381	 36.10	0	2576053..2577279	-	408	161510647	-	USA300HOU_2437	-	glycine betaine/choline ABC transporter ATP-binding protein
2382	 34.17	0	2577606..2577725	-	39	161510648	-	USA300HOU_2438	-	hypothetical protein
2383	 32.17	0	2577949..2578548	-	199	161510649	-	USA300HOU_2439	-	hypothetical protein
2384	 36.26	0	2578728..2580365	+	545	161510650	-	USA300HOU_2440	-	APC family amino acid-polyamine-organocation transporter
2385	 34.81	0	2580973..2582325	+	450	161510651	pnbA	USA300HOU_2441	-	carboxylesterase
2386	 34.86	0	2582387..2583565	-	392	161510652	-	USA300HOU_2442	-	major facilitator superfamily chloramphenicol:cation symporter
2387	 35.26	0	2583970..2584746	-	258	161510653	-	USA300HOU_2443	-	ABC transporter ATP-binding protein
2388	 34.69	0	2584739..2585401	-	220	161510654	-	USA300HOU_2444	-	ABC transporter ATP-binding protein
2389	 37.70	+1	2585649..2586725	-	358	161510655	pepA	USA300HOU_2445	-	M42 family glutamyl aminopeptidase
2390	 28.09	-1	2587080..2587346	-	88	161510656	-	USA300HOU_2446	-	hypothetical protein
2391	 28.29	-1	2587346..2587603	-	85	161510657	-	USA300HOU_2447	-	hypothetical protein
2392	 29.74	0	2587709..2587903	-	64	161510658	-	USA300HOU_2448	-	hypothetical protein
2393	 28.29	-1	2587962..2588417	+	151	161510659	-	USA300HOU_2449	-	hypothetical protein
2394	 35.74	0	2588585..2590162	-	525	161510660	gltB2	USA300HOU_2450	-	glutamate synthase (NADPH)
2395	 21.51	-2	2590199..2590291	+	30	161510661	-	USA300HOU_2451	-	hypothetical protein
2396	 30.80	0	2590357..2591106	+	249	161510662	-	USA300HOU_2452	-	hypothetical protein
2397	 37.10	+1	2591330..2592523	-	397	161510663	-	USA300HOU_2453	-	major facilitator transporter
2398	 35.07	0	2592535..2593284	-	249	161510664	-	USA300HOU_2454	-	ABC transporter ATP-binding protein
2399	 35.17	0	2593277..2594092	-	271	161510665	-	USA300HOU_2455	-	oligopeptide ABC transporter ATP-binding protein
2400	 35.75	0	2594089..2594958	-	289	161510666	-	USA300HOU_2456	-	oligopeptide ABC transporter membrane protein
2401	 33.87	0	2594955..2595890	-	311	161510667	-	USA300HOU_2457	-	oligopeptide ABC transporter membrane protein
2402	 34.83	0	2595903..2597501	-	532	161510668	-	USA300HOU_2458	-	oligopeptide ABC transporter substrate-binding protein
2403	 36.10	0	2597644..2598945	-	433	161510669	-	USA300HOU_2459	-	hypothetical protein
2404	 33.82	0	2598938..2599756	-	272	161510670	-	USA300HOU_2460	-	hypothetical protein
2405	 35.64	0	2599767..2600588	-	273	161510671	-	USA300HOU_2461	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.