IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2156	 36.53	+1	2353103..2353540	-	145	161510422	rplM	USA300HOU_2209	-	50S ribosomal protein L13
2157	 34.33	0	2353780..2354583	-	267	161510423	truA2	USA300HOU_2210	-	tRNA pseudouridine synthase A
2158	 31.85	0	2354588..2355394	-	268	161510424	-	USA300HOU_2211	-	cobalt ABC transporter
2159	 34.15	0	2355384..2356244	-	286	161510425	-	USA300HOU_2212	-	cobalt transporter ATP-binding subunit
2160	 34.57	0	2356241..2357050	-	269	161510426	-	USA300HOU_2213	-	cobalt transporter ATP-binding subunit
2161	 37.40	+1	2357588..2357956	-	122	161510427	rplQ	USA300HOU_2214	-	50S ribosomal protein L17
2162	 33.76	0	2357973..2358917	-	314	161510428	rpoA	USA300HOU_2215	-	DNA-directed RNA polymerase subunit alpha
2163	 40.00	+1	2358992..2359381	-	129	161510429	rpsK	USA300HOU_2216	-	30S ribosomal protein S11
2164	 39.07	+1	2359405..2359770	-	121	161510430	rpsM	USA300HOU_2217	-	30S ribosomal protein S13
2165	 28.95	0	2359793..2359906	-	37	161510431	rmpJ	USA300HOU_2218	-	50S ribosomal protein L36
2166	 33.33	0	2359938..2360156	-	72	161510432	infA	USA300HOU_2219	-	translation initiation factor IF-1
2167	 35.65	0	2360349..2360996	-	215	161510433	adk	USA300HOU_2220	-	adenylate kinase
2168	 34.57	0	2361013..2362305	-	430	161510434	secY1	USA300HOU_2221	-	preprotein translocase subunit SecY
2169	 38.78	+1	2362305..2362745	-	146	161510435	rplO	USA300HOU_2222	-	50S ribosomal protein L15
2170	 35.56	0	2362762..2362941	-	59	161510436	rpmD	USA300HOU_2223	-	50S ribosomal protein L30
2171	 40.72	+2	2362958..2363458	-	166	161510437	rpsE	USA300HOU_2224	-	30S ribosomal protein S5
2172	 35.56	0	2363479..2363838	-	119	161510438	rplR	USA300HOU_2225	-	50S ribosomal protein L18
2173	 35.20	0	2363869..2364405	-	178	161510439	rplF	USA300HOU_2226	-	50S ribosomal protein L6
2174	 34.09	0	2364430..2364828	-	132	161510440	rpsH	USA300HOU_2227	-	30S ribosomal protein S8
2175	 38.71	+1	2364860..2365045	-	61	161510441	-	USA300HOU_2228	-	30S ribosomal protein S14
2176	 34.26	0	2365068..2365607	-	179	161510442	rplE	USA300HOU_2229	-	50S ribosomal protein L5
2177	 33.65	0	2365634..2365951	-	105	161510443	rplX	USA300HOU_2230	-	50S ribosomal protein L24
2178	 40.92	+2	2365987..2366355	-	122	161510444	rplN	USA300HOU_2231	-	50S ribosomal protein L14
2179	 30.30	0	2366387..2366650	-	87	161510445	rpsQ	USA300HOU_2232	-	30S ribosomal protein S17
2180	 34.29	0	2366674..2366883	-	69	161510446	rpmC	USA300HOU_2233	-	50S ribosomal protein L29
2181	 35.73	0	2372441..2373775	-	444	161510447	-	USA300HOU_2234	-	NCS2 family nucleobase:cation symporter-2
2182	 33.10	0	2373888..2376023	-	711	161510448	topB	USA300HOU_2235	-	DNA topoisomerase III
2183	 27.08	-1	2376049..2376144	-	31	161510449	-	USA300HOU_2236	-	hypothetical protein
2184	 30.98	0	2376120..2377097	+	325	161510450	-	USA300HOU_2237	-	acetyltransferase
2185	 36.23	0	2377278..2378141	+	287	161510451	glcU	USA300HOU_2238	-	DMT superfamily drug/metabolite transporter
2186	 30.30	0	2378258..2378389	-	43	161510452	-	USA300HOU_2239	-	hypothetical protein
2187	 32.25	0	2378560..2379486	-	308	161510453	-	USA300HOU_2240	-	malonate efflux carrier
2188	 32.73	0	2379601..2379765	+	54	161510454	-	USA300HOU_2241	-	hypothetical protein
2189	 27.67	-1	2380010..2380327	+	105	161510455	-	USA300HOU_2242	-	hypothetical protein
2190	 33.87	0	2380514..2383681	-	1055	161510456	-	USA300HOU_2243	-	resistance-nodulation-cell division acriflavin:proton (H+) antiporter
2191	 33.97	0	2383798..2385063	-	421	161510457	fmhB	USA300HOU_2244	-	peptidoglycan pentaglycine interpeptide biosynthesis protein FmhB
2192	 29.93	0	2385695..2386459	-	254	161510458	-	USA300HOU_2245	-	hypothetical protein
2193	 32.20	0	2386621..2387061	+	146	161510459	marR	USA300HOU_2246	-	MarR family transcriptional regulator
2194	 34.16	0	2387054..2388265	+	403	161510460	-	USA300HOU_2247	-	major facilitator transporter
2195	 29.06	0	2388367..2388717	-	116	161510461	-	USA300HOU_2248	-	hypothetical protein
2196	 27.49	-1	2388843..2389013	+	56	161510462	-	USA300HOU_2249	-	hypothetical protein
2197	 33.43	0	2389408..2390430	-	340	161510463	moaA	USA300HOU_2250	-	molybdenum cofactor biosynthesis protein A
2198	 32.17	0	2390450..2391049	-	199	161510464	mobA	USA300HOU_2251	-	molybdopterin-guanine dinucleotide biosynthesis protein A
2199	 31.62	0	2391056..2391289	-	77	161510465	moaD	USA300HOU_2252	-	molybdopterin synthase small subunit
2200	 36.02	0	2391295..2391741	-	148	161510466	moaE	USA300HOU_2253	-	molybdopterin synthase large subunit
2201	 31.69	0	2391755..2392240	-	161	161510467	mobB	USA300HOU_2254	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2202	 37.62	+1	2392237..2393496	-	419	161510468	moeA	USA300HOU_2255	-	molybdopterin biosynthesis protein MoeA
2203	 38.38	+1	2393559..2394053	+	164	161510469	moaC	USA300HOU_2256	-	molybdenum cofactor biosynthesis protein C
2204	 37.87	+1	2394055..2394561	-	168	161510470	moaB	USA300HOU_2257	-	molybdopterin cofactor biosynthesis protein MoaB
2205	 34.73	0	2394592..2395596	-	334	161510471	moeB	USA300HOU_2258	-	molybdopterin biosynthesis protein MoeB
2206	 32.67	0	2395766..2396371	-	201	161510472	modC	USA300HOU_2259	-	molybdenum ABC transporter ATP-binding protein
2207	 34.97	0	2396372..2397043	-	223	161510473	modB	USA300HOU_2260	-	molybdenum ABC transporter membrane protein
2208	 29.89	0	2397057..2397839	-	260	161510474	modA	USA300HOU_2261	-	molybdenum ABC transporter ATP-binding protein
2209	 34.09	0	2398129..2398926	+	265	161510475	fdhD	USA300HOU_2262	-	formate dehydrogenase accessory protein
2210	 33.98	0	2399098..2399868	-	256	161510476	-	USA300HOU_2263	-	acetyltransferase
2211	 34.23	0	2399940..2400494	-	184	161510477	-	USA300HOU_2264	-	biotin biosynthesis protein
2212	 34.08	0	2400615..2401556	-	313	161510478	-	USA300HOU_2265	-	purine nucleosidase
2213	 32.23	0	2401955..2402863	-	302	161510479	-	USA300HOU_2266	-	iron (Fe+3) ABC transporter binding protein
2214	 34.46	0	2403077..2404231	-	384	161510480	-	USA300HOU_2267	-	acyl-CoA dehydrogenase
2215	 33.22	0	2404448..2405362	-	304	161510481	-	USA300HOU_2268	-	UT family urea transporter
2216	 40.59	+2	2405613..2405915	+	100	161510482	ureA	USA300HOU_2269	-	urease subunit gamma
2217	 36.74	+1	2405929..2406339	+	136	161510483	ureB	USA300HOU_2270	-	urease subunit beta
2218	 37.82	+1	2406336..2408051	+	571	161510484	ureC	USA300HOU_2271	-	urease subunit alpha
2219	 33.11	0	2408064..2408516	+	150	161510485	ureE	USA300HOU_2272	-	urease accessory protein UreE
2220	 33.04	0	2408509..2409198	+	229	161510486	ureF	USA300HOU_2273	-	urease accessory protein UreF
2221	 34.80	0	2409211..2409825	+	204	161510487	ureG	USA300HOU_2274	-	urease accessory protein UreG
2222	 30.94	0	2409825..2410661	+	278	161510488	ureD	USA300HOU_2275	-	urease accessory protein UreD
2223	 24.71	-2	2410850..2411197	-	115	161510489	sarR	USA300HOU_2276	-	staphylococcal accessory regulator A
2224	 27.52	-1	2411625..2411951	-	108	161510490	-	USA300HOU_2277	-	hypothetical protein
2225	 28.09	-1	2412015..2412758	-	247	161510491	sarY	USA300HOU_2278	-	hypothetical protein
2226	 27.81	-1	2412784..2414739	-	651	161510492	-	USA300HOU_2279	-	transcriptional regulator
2227	 39.05	+1	2415349..2416152	+	267	161510493	-	USA300HOU_2280	-	secretory antigen SsaA
2228	 30.04	0	2416169..2416411	-	80	161510494	-	USA300HOU_2281	-	hypothetical protein
2229	 35.05	0	2416585..2417985	-	466	161510495	nhaC	USA300HOU_2282	-	NhaC family Na(+)/H(+) antiporter
2230	 33.33	0	2418080..2419162	-	360	161510496	-	USA300HOU_2283	-	D-octopine dehydrogenase
2231	 28.37	-1	2419410..2419832	+	140	161510497	-	USA300HOU_2284	-	hypothetical protein
2232	 38.32	+1	2420069..2420569	+	166	161510498	ssaA	USA300HOU_2285	-	secretory antigen SsaA
2233	 35.64	0	2420931..2421884	+	317	161510499	-	USA300HOU_2286	-	(R)-2-hydroxyacid dehydrogenase
2234	 32.80	0	2421976..2423100	-	374	161510500	-	USA300HOU_2287	-	hypothetical protein
2235	 32.69	0	2423411..2424187	-	258	161510501	lytA	USA300HOU_2288	-	N-acetylmuramoyl-L-alanine amidase
2236	 27.35	-1	2424209..2424442	-	77	161510502	-	USA300HOU_2289	-	hypothetical protein
2237	 31.22	0	2424670..2425143	-	157	161510503	-	USA300HOU_2290	-	hypothetical protein
2238	 35.57	0	2425143..2428097	-	984	161510504	-	USA300HOU_2291	-	formate dehydrogenase alpha subunit
2239	 35.53	0	2428699..2429655	-	318	161510505	-	USA300HOU_2292	-	transcriptional regulator
2240	 32.21	0	2429779..2430576	-	265	161510506	suhB	USA300HOU_2293	-	inositol-phosphate phosphatase
2241	 30.88	0	2430961..2431653	+	230	161510507	-	USA300HOU_2294	-	transcriptional regulator
2242	 30.35	0	2432300..2433037	-	245	161510508	-	USA300HOU_2296	-	hypothetical protein
2243	 25.45	-1	2433086..2433415	+	109	161510509	-	USA300HOU_2297	-	hypothetical protein
2244	 29.32	0	2433860..2434732	+	290	161510510	-	USA300HOU_2298	-	transcriptional regulator
2245	 34.20	0	2435119..2436498	-	459	161510511	-	USA300HOU_2299	-	APC family amino acid-polyamine-organocation transporter
2246	 33.89	0	2436778..2437134	+	118	161510512	-	USA300HOU_2300	-	hypothetical protein
2247	 34.20	0	2438324..2439241	-	305	161510513	-	USA300HOU_2301	-	BASS family bile acid:sodium (Na+) symporter
2248	 29.76	0	2439509..2440039	+	176	161510514	-	USA300HOU_2302	-	hypothetical protein
2249	 35.76	0	2440105..2441709	-	534	161510515	-	USA300HOU_2303	-	PTS family arbutin-salicin-cellobiose (ASC) porter component IIBC
2250	 29.80	0	2442039..2442803	+	254	161510516	-	USA300HOU_2304	-	transcriptional regulator
2251	 33.73	0	2442861..2443367	-	168	161510517	-	USA300HOU_2305	-	hypothetical protein
2252	 35.36	0	2443534..2444913	-	459	161510518	-	USA300HOU_2306	-	NhaC family Na(+)/H(+) antiporter
2253	 28.25	-1	2445072..2445641	-	189	161510519	-	USA300HOU_2307	-	hypothetical protein
2254	 39.34	+1	2446128..2447009	-	293	161510520	-	USA300HOU_2308	-	dehydrogenase
2255	 37.08	+1	2447120..2448241	-	373	161510521	-	USA300HOU_2309	-	M20D subfamily peptidase
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.