IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2114	 29.63	0	2306127..2306234	-	35	161510380	-	USA300HOU_2165	-	hypothetical protein
2115	 35.74	0	2306266..2307636	-	456	161510381	-	USA300HOU_2166	-	hypothetical protein
2116	 33.54	0	2307872..2308840	-	322	161510382	-	USA300HOU_2167	-	iron (Fe3+) ABC transporter membrane protein
2117	 34.30	0	2308837..2309868	-	343	161510383	-	USA300HOU_2168	-	iron (Fe3+) ABC transporter membrane protein
2118	 30.79	0	2309880..2310863	-	327	161510384	-	USA300HOU_2169	-	iron (Fe3+) ABC transporter binding protein
2119	 31.09	0	2311255..2312325	-	356	161510385	-	USA300HOU_2170	-	hypothetical protein
2120	 32.59	0	2312332..2314089	-	585	161510386	-	USA300HOU_2171	-	hypothetical protein
2121	 31.99	0	2314076..2315269	-	397	161510387	-	USA300HOU_2172	-	major facilitator transporter
2122	 32.68	0	2315371..2317347	+	658	161510388	-	USA300HOU_2173	-	hypothetical protein
2123	 32.75	0	2319463..2319972	-	169	161510389	asp23	USA300HOU_2175	-	alkaline shock protein 23
2124	 30.42	0	2320035..2320274	-	79	161510390	-	USA300HOU_2176	-	hypothetical protein
2125	 33.33	0	2320287..2320835	-	182	161510391	-	USA300HOU_2177	-	hypothetical protein
2126	 35.89	0	2320998..2322560	-	520	161510392	-	USA300HOU_2178	-	BCCT family betaine/carnitine/choline transporter
2127	 34.63	0	2322867..2323868	-	333	161510393	-	USA300HOU_2179	-	alcohol dehydrogenase
2128	 38.01	+1	2324102..2325106	-	334	161510394	-	USA300HOU_2180	-	alcohol dehydrogenase
2129	 33.68	0	2325386..2326255	-	289	161510395	-	USA300HOU_2181	-	hypothetical protein
2130	 34.75	0	2326521..2327933	-	470	161510396	lacG	USA300HOU_2182	-	6-phospho-beta-galactosidase
2131	 35.83	0	2327951..2329669	-	572	161510397	lacE	USA300HOU_2183	-	PTS family lactose-N,N-diacetylchitobiose-beta-glucoside (lac) porter component IIBC
2132	 36.54	+1	2329669..2329980	-	103	161510398	lacF	USA300HOU_2184	-	PTS system, lactose-specific IIA component
2133	 35.07	0	2330002..2330982	-	326	161510399	lacD	USA300HOU_2185	-	tagatose 1,6-diphosphate aldolase
2134	 34.94	0	2330986..2331918	-	310	161510400	lacC	USA300HOU_2186	-	tagatose-6-phosphate kinase
2135	 34.69	0	2331931..2332446	-	171	161510401	lacB	USA300HOU_2187	-	galactose-6-phosphate isomerase subunit LacB
2136	 36.60	+1	2332462..2332890	-	142	161510402	lacA	USA300HOU_2188	-	galactose-6-phosphate isomerase subunit LacA
2137	 34.22	0	2333258..2334049	-	263	161510403	lacR	USA300HOU_2189	-	lactose phosphotransferase system repressor
2138	 36.17	0	2334255..2334995	+	246	161510404	-	USA300HOU_2190	-	NAD-dependent deacetylase
2139	 25.40	-1	2336155..2336280	-	41	161510405	-	USA300HOU_2192	-	hypothetical protein
2140	 33.33	0	2336500..2337348	-	282	161510406	-	USA300HOU_2193	-	aldo/keto reductase
2141	 36.36	+1	2337335..2337433	-	32	161510407	-	USA300HOU_2194	-	hypothetical protein
2142	 29.74	0	2337418..2337834	-	138	161510408	-	USA300HOU_2195	-	MerR family transcriptional regulator
2143	 32.74	0	2338078..2338245	+	55	161510409	-	USA300HOU_2196	-	hypothetical protein
2144	 33.00	0	2338236..2340665	+	809	161510410	hysA	USA300HOU_2197	-	hyaluronate lyase
2145	 30.99	0	2340725..2341579	-	284	161510411	-	USA300HOU_2198	-	M23B subfamily peptidase
2146	 30.17	0	2341790..2342611	-	273	161510412	-	USA300HOU_2199	-	HAD family phosphatase
2147	 32.16	0	2342899..2343324	+	141	161510413	-	USA300HOU_2200	-	hypothetical protein
2148	 33.19	0	2343688..2344392	-	234	161510414	alsD	USA300HOU_2201	-	acetolactate decarboxylase
2149	 34.83	0	2344429..2346093	-	554	161510415	alsS	USA300HOU_2202	-	acetolactate synthase
2150	 36.00	0	2346341..2346565	+	74	161510416	-	USA300HOU_2203	-	hypothetical protein
2151	 22.60	-2	2347283..2348689	-	468	161510417	-	USA300HOU_2204	-	hypothetical protein
2152	 25.95	-1	2348818..2349954	-	378	161510418	clpA	USA300HOU_2205	-	endopeptidase ClpA
2153	 30.56	0	2349955..2350746	-	263	161510419	-	USA300HOU_2206	-	hypothetical protein
2154	 27.78	-1	2351049..2352146	-	365	161510420	-	USA300HOU_2207	-	hypothetical protein
2155	 40.60	+2	2352691..2353089	-	132	161510421	rpsI	USA300HOU_2208	-	30S ribosomal protein S9
2156	 36.53	+1	2353103..2353540	-	145	161510422	rplM	USA300HOU_2209	-	50S ribosomal protein L13
2157	 34.33	0	2353780..2354583	-	267	161510423	truA2	USA300HOU_2210	-	tRNA pseudouridine synthase A
2158	 31.85	0	2354588..2355394	-	268	161510424	-	USA300HOU_2211	-	cobalt ABC transporter
2159	 34.15	0	2355384..2356244	-	286	161510425	-	USA300HOU_2212	-	cobalt transporter ATP-binding subunit
2160	 34.57	0	2356241..2357050	-	269	161510426	-	USA300HOU_2213	-	cobalt transporter ATP-binding subunit
2161	 37.40	+1	2357588..2357956	-	122	161510427	rplQ	USA300HOU_2214	-	50S ribosomal protein L17
2162	 33.76	0	2357973..2358917	-	314	161510428	rpoA	USA300HOU_2215	-	DNA-directed RNA polymerase subunit alpha
2163	 40.00	+1	2358992..2359381	-	129	161510429	rpsK	USA300HOU_2216	-	30S ribosomal protein S11
2164	 39.07	+1	2359405..2359770	-	121	161510430	rpsM	USA300HOU_2217	-	30S ribosomal protein S13
2165	 28.95	0	2359793..2359906	-	37	161510431	rmpJ	USA300HOU_2218	-	50S ribosomal protein L36
2166	 33.33	0	2359938..2360156	-	72	161510432	infA	USA300HOU_2219	-	translation initiation factor IF-1
2167	 35.65	0	2360349..2360996	-	215	161510433	adk	USA300HOU_2220	-	adenylate kinase
2168	 34.57	0	2361013..2362305	-	430	161510434	secY1	USA300HOU_2221	-	preprotein translocase subunit SecY
2169	 38.78	+1	2362305..2362745	-	146	161510435	rplO	USA300HOU_2222	-	50S ribosomal protein L15
2170	 35.56	0	2362762..2362941	-	59	161510436	rpmD	USA300HOU_2223	-	50S ribosomal protein L30
2171	 40.72	+2	2362958..2363458	-	166	161510437	rpsE	USA300HOU_2224	-	30S ribosomal protein S5
2172	 35.56	0	2363479..2363838	-	119	161510438	rplR	USA300HOU_2225	-	50S ribosomal protein L18
2173	 35.20	0	2363869..2364405	-	178	161510439	rplF	USA300HOU_2226	-	50S ribosomal protein L6
2174	 34.09	0	2364430..2364828	-	132	161510440	rpsH	USA300HOU_2227	-	30S ribosomal protein S8
2175	 38.71	+1	2364860..2365045	-	61	161510441	-	USA300HOU_2228	-	30S ribosomal protein S14
2176	 34.26	0	2365068..2365607	-	179	161510442	rplE	USA300HOU_2229	-	50S ribosomal protein L5
2177	 33.65	0	2365634..2365951	-	105	161510443	rplX	USA300HOU_2230	-	50S ribosomal protein L24
2178	 40.92	+2	2365987..2366355	-	122	161510444	rplN	USA300HOU_2231	-	50S ribosomal protein L14
2179	 30.30	0	2366387..2366650	-	87	161510445	rpsQ	USA300HOU_2232	-	30S ribosomal protein S17
2180	 34.29	0	2366674..2366883	-	69	161510446	rpmC	USA300HOU_2233	-	50S ribosomal protein L29
2181	 35.73	0	2372441..2373775	-	444	161510447	-	USA300HOU_2234	-	NCS2 family nucleobase:cation symporter-2
2182	 33.10	0	2373888..2376023	-	711	161510448	topB	USA300HOU_2235	-	DNA topoisomerase III
2183	 27.08	-1	2376049..2376144	-	31	161510449	-	USA300HOU_2236	-	hypothetical protein
2184	 30.98	0	2376120..2377097	+	325	161510450	-	USA300HOU_2237	-	acetyltransferase
2185	 36.23	0	2377278..2378141	+	287	161510451	glcU	USA300HOU_2238	-	DMT superfamily drug/metabolite transporter
2186	 30.30	0	2378258..2378389	-	43	161510452	-	USA300HOU_2239	-	hypothetical protein
2187	 32.25	0	2378560..2379486	-	308	161510453	-	USA300HOU_2240	-	malonate efflux carrier
2188	 32.73	0	2379601..2379765	+	54	161510454	-	USA300HOU_2241	-	hypothetical protein
2189	 27.67	-1	2380010..2380327	+	105	161510455	-	USA300HOU_2242	-	hypothetical protein
2190	 33.87	0	2380514..2383681	-	1055	161510456	-	USA300HOU_2243	-	resistance-nodulation-cell division acriflavin:proton (H+) antiporter
2191	 33.97	0	2383798..2385063	-	421	161510457	fmhB	USA300HOU_2244	-	peptidoglycan pentaglycine interpeptide biosynthesis protein FmhB
2192	 29.93	0	2385695..2386459	-	254	161510458	-	USA300HOU_2245	-	hypothetical protein
2193	 32.20	0	2386621..2387061	+	146	161510459	marR	USA300HOU_2246	-	MarR family transcriptional regulator
2194	 34.16	0	2387054..2388265	+	403	161510460	-	USA300HOU_2247	-	major facilitator transporter
2195	 29.06	0	2388367..2388717	-	116	161510461	-	USA300HOU_2248	-	hypothetical protein
2196	 27.49	-1	2388843..2389013	+	56	161510462	-	USA300HOU_2249	-	hypothetical protein
2197	 33.43	0	2389408..2390430	-	340	161510463	moaA	USA300HOU_2250	-	molybdenum cofactor biosynthesis protein A
2198	 32.17	0	2390450..2391049	-	199	161510464	mobA	USA300HOU_2251	-	molybdopterin-guanine dinucleotide biosynthesis protein A
2199	 31.62	0	2391056..2391289	-	77	161510465	moaD	USA300HOU_2252	-	molybdopterin synthase small subunit
2200	 36.02	0	2391295..2391741	-	148	161510466	moaE	USA300HOU_2253	-	molybdopterin synthase large subunit
2201	 31.69	0	2391755..2392240	-	161	161510467	mobB	USA300HOU_2254	-	molybdopterin-guanine dinucleotide biosynthesis protein B
2202	 37.62	+1	2392237..2393496	-	419	161510468	moeA	USA300HOU_2255	-	molybdopterin biosynthesis protein MoeA
2203	 38.38	+1	2393559..2394053	+	164	161510469	moaC	USA300HOU_2256	-	molybdenum cofactor biosynthesis protein C
2204	 37.87	+1	2394055..2394561	-	168	161510470	moaB	USA300HOU_2257	-	molybdopterin cofactor biosynthesis protein MoaB
2205	 34.73	0	2394592..2395596	-	334	161510471	moeB	USA300HOU_2258	-	molybdopterin biosynthesis protein MoeB
2206	 32.67	0	2395766..2396371	-	201	161510472	modC	USA300HOU_2259	-	molybdenum ABC transporter ATP-binding protein
2207	 34.97	0	2396372..2397043	-	223	161510473	modB	USA300HOU_2260	-	molybdenum ABC transporter membrane protein
2208	 29.89	0	2397057..2397839	-	260	161510474	modA	USA300HOU_2261	-	molybdenum ABC transporter ATP-binding protein
2209	 34.09	0	2398129..2398926	+	265	161510475	fdhD	USA300HOU_2262	-	formate dehydrogenase accessory protein
2210	 33.98	0	2399098..2399868	-	256	161510476	-	USA300HOU_2263	-	acetyltransferase
2211	 34.23	0	2399940..2400494	-	184	161510477	-	USA300HOU_2264	-	biotin biosynthesis protein
2212	 34.08	0	2400615..2401556	-	313	161510478	-	USA300HOU_2265	-	purine nucleosidase
2213	 32.23	0	2401955..2402863	-	302	161510479	-	USA300HOU_2266	-	iron (Fe+3) ABC transporter binding protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.