IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2082	 36.67	+1	2260027..2260266	-	79	161510348	-	USA300HOU_2131	-	hypothetical protein
2083	 34.72	0	2260288..2261226	-	312	161510349	manA1	USA300HOU_2132	-	mannose-6-phosphate isomerase
2084	 34.68	0	2261661..2262326	-	221	161510350	-	USA300HOU_2133	-	hypothetical protein
2085	 34.58	0	2262478..2262798	+	106	161510351	czrA	USA300HOU_2134	-	transcriptional regulator CzrA
2086	 33.23	0	2262800..2263780	+	326	161510352	czrB	USA300HOU_2135	-	CDF family cation diffusion facilitator
2087	 24.24	-2	2263846..2263944	+	32	161510353	-	USA300HOU_2136	-	hypothetical protein
2088	 27.20	-1	2264046..2265137	+	363	161510354	-	USA300HOU_2137	-	lytic regulatory protein
2089	 29.52	0	2265637..2265741	-	34	161510355	-	USA300HOU_2138	-	hypothetical protein
2090	 25.86	-1	2266428..2267564	-	378	161510356	-	USA300HOU_2140	-	SAP domain-containing protein
2091	 18.28	-2	2267853..2267945	+	30	161510357	-	USA300HOU_2141	-	hypothetical protein
2092	 27.93	-1	2268002..2268112	-	36	161510358	-	USA300HOU_2142	-	hypothetical protein
2093	 33.45	0	2268650..2269507	-	285	161510359	-	USA300HOU_2143	-	HAD family phosphatase
2094	 35.38	0	2269575..2270357	-	260	161510360	-	USA300HOU_2144	-	ABC transporter ATP-binding protein
2095	 35.14	0	2270589..2272412	-	607	161510361	glmS	USA300HOU_2145	-	D-fructose-6-phosphate amidotransferase
2096	 35.74	0	2273075..2274613	+	512	161510362	mtlF	USA300HOU_2146	-	PTS family fructose/mannitol (fru) porter component IIBC
2097	 33.33	0	2274648..2276780	+	710	161510363	bglG	USA300HOU_2147	-	transcriptional antiterminator
2098	 35.86	0	2276792..2277226	+	144	161510364	mtlA	USA300HOU_2148	-	PTS family fructose/mannitol (fru) porter component IIA
2099	 32.88	0	2277226..2278332	+	368	161510365	mtlD	USA300HOU_2149	-	mannitol-1-phosphate 5-dehydrogenase
2100	 34.66	0	2286364..2287719	-	451	161510366	glmM	USA300HOU_2151	-	phosphoglucosamine mutase
2101	 30.12	0	2287746..2288678	-	310	161510367	-	USA300HOU_2152	-	hypothetical protein
2102	 33.70	0	2288680..2289489	-	269	161510368	-	USA300HOU_2153	-	hypothetical protein
2103	 31.68	0	2289678..2290586	-	302	161510369	arg	USA300HOU_2154	-	arginase
2104	 30.76	0	2290812..2292014	+	400	161510370	-	USA300HOU_2155	-	transposase
2105	 32.38	0	2292150..2292254	+	34	161510371	-	USA300HOU_2156	-	hypothetical protein
2106	 36.53	+1	2298181..2299245	-	354	161510372	-	USA300HOU_2157	-	ATP-binding protein
2107	 33.47	0	2299393..2300838	-	481	161510373	-	USA300HOU_2158	-	major facilitator transporter
2108	 27.00	-1	2301157..2301630	-	157	161510374	-	USA300HOU_2159	-	hypothetical protein
2109	 30.73	0	2301729..2303072	-	447	161510375	-	USA300HOU_2160	-	major facilitator transporter
2110	 31.73	0	2303249..2303935	-	228	161510376	-	USA300HOU_2161	-	hemolysin III
2111	 31.40	0	2303951..2305138	-	395	161510377	-	USA300HOU_2162	-	UTP--glucose-1-phosphate uridylyltransferase
2112	 33.91	0	2305182..2305697	-	171	161510378	-	USA300HOU_2163	-	hypothetical protein
2113	 30.65	0	2305874..2306134	+	86	161510379	-	USA300HOU_2164	-	hypothetical protein
2114	 29.63	0	2306127..2306234	-	35	161510380	-	USA300HOU_2165	-	hypothetical protein
2115	 35.74	0	2306266..2307636	-	456	161510381	-	USA300HOU_2166	-	hypothetical protein
2116	 33.54	0	2307872..2308840	-	322	161510382	-	USA300HOU_2167	-	iron (Fe3+) ABC transporter membrane protein
2117	 34.30	0	2308837..2309868	-	343	161510383	-	USA300HOU_2168	-	iron (Fe3+) ABC transporter membrane protein
2118	 30.79	0	2309880..2310863	-	327	161510384	-	USA300HOU_2169	-	iron (Fe3+) ABC transporter binding protein
2119	 31.09	0	2311255..2312325	-	356	161510385	-	USA300HOU_2170	-	hypothetical protein
2120	 32.59	0	2312332..2314089	-	585	161510386	-	USA300HOU_2171	-	hypothetical protein
2121	 31.99	0	2314076..2315269	-	397	161510387	-	USA300HOU_2172	-	major facilitator transporter
2122	 32.68	0	2315371..2317347	+	658	161510388	-	USA300HOU_2173	-	hypothetical protein
2123	 32.75	0	2319463..2319972	-	169	161510389	asp23	USA300HOU_2175	-	alkaline shock protein 23
2124	 30.42	0	2320035..2320274	-	79	161510390	-	USA300HOU_2176	-	hypothetical protein
2125	 33.33	0	2320287..2320835	-	182	161510391	-	USA300HOU_2177	-	hypothetical protein
2126	 35.89	0	2320998..2322560	-	520	161510392	-	USA300HOU_2178	-	BCCT family betaine/carnitine/choline transporter
2127	 34.63	0	2322867..2323868	-	333	161510393	-	USA300HOU_2179	-	alcohol dehydrogenase
2128	 38.01	+1	2324102..2325106	-	334	161510394	-	USA300HOU_2180	-	alcohol dehydrogenase
2129	 33.68	0	2325386..2326255	-	289	161510395	-	USA300HOU_2181	-	hypothetical protein
2130	 34.75	0	2326521..2327933	-	470	161510396	lacG	USA300HOU_2182	-	6-phospho-beta-galactosidase
2131	 35.83	0	2327951..2329669	-	572	161510397	lacE	USA300HOU_2183	-	PTS family lactose-N,N-diacetylchitobiose-beta-glucoside (lac) porter component IIBC
2132	 36.54	+1	2329669..2329980	-	103	161510398	lacF	USA300HOU_2184	-	PTS system, lactose-specific IIA component
2133	 35.07	0	2330002..2330982	-	326	161510399	lacD	USA300HOU_2185	-	tagatose 1,6-diphosphate aldolase
2134	 34.94	0	2330986..2331918	-	310	161510400	lacC	USA300HOU_2186	-	tagatose-6-phosphate kinase
2135	 34.69	0	2331931..2332446	-	171	161510401	lacB	USA300HOU_2187	-	galactose-6-phosphate isomerase subunit LacB
2136	 36.60	+1	2332462..2332890	-	142	161510402	lacA	USA300HOU_2188	-	galactose-6-phosphate isomerase subunit LacA
2137	 34.22	0	2333258..2334049	-	263	161510403	lacR	USA300HOU_2189	-	lactose phosphotransferase system repressor
2138	 36.17	0	2334255..2334995	+	246	161510404	-	USA300HOU_2190	-	NAD-dependent deacetylase
2139	 25.40	-1	2336155..2336280	-	41	161510405	-	USA300HOU_2192	-	hypothetical protein
2140	 33.33	0	2336500..2337348	-	282	161510406	-	USA300HOU_2193	-	aldo/keto reductase
2141	 36.36	+1	2337335..2337433	-	32	161510407	-	USA300HOU_2194	-	hypothetical protein
2142	 29.74	0	2337418..2337834	-	138	161510408	-	USA300HOU_2195	-	MerR family transcriptional regulator
2143	 32.74	0	2338078..2338245	+	55	161510409	-	USA300HOU_2196	-	hypothetical protein
2144	 33.00	0	2338236..2340665	+	809	161510410	hysA	USA300HOU_2197	-	hyaluronate lyase
2145	 30.99	0	2340725..2341579	-	284	161510411	-	USA300HOU_2198	-	M23B subfamily peptidase
2146	 30.17	0	2341790..2342611	-	273	161510412	-	USA300HOU_2199	-	HAD family phosphatase
2147	 32.16	0	2342899..2343324	+	141	161510413	-	USA300HOU_2200	-	hypothetical protein
2148	 33.19	0	2343688..2344392	-	234	161510414	alsD	USA300HOU_2201	-	acetolactate decarboxylase
2149	 34.83	0	2344429..2346093	-	554	161510415	alsS	USA300HOU_2202	-	acetolactate synthase
2150	 36.00	0	2346341..2346565	+	74	161510416	-	USA300HOU_2203	-	hypothetical protein
2151	 22.60	-2	2347283..2348689	-	468	161510417	-	USA300HOU_2204	-	hypothetical protein
2152	 25.95	-1	2348818..2349954	-	378	161510418	clpA	USA300HOU_2205	-	endopeptidase ClpA
2153	 30.56	0	2349955..2350746	-	263	161510419	-	USA300HOU_2206	-	hypothetical protein
2154	 27.78	-1	2351049..2352146	-	365	161510420	-	USA300HOU_2207	-	hypothetical protein
2155	 40.60	+2	2352691..2353089	-	132	161510421	rpsI	USA300HOU_2208	-	30S ribosomal protein S9
2156	 36.53	+1	2353103..2353540	-	145	161510422	rplM	USA300HOU_2209	-	50S ribosomal protein L13
2157	 34.33	0	2353780..2354583	-	267	161510423	truA2	USA300HOU_2210	-	tRNA pseudouridine synthase A
2158	 31.85	0	2354588..2355394	-	268	161510424	-	USA300HOU_2211	-	cobalt ABC transporter
2159	 34.15	0	2355384..2356244	-	286	161510425	-	USA300HOU_2212	-	cobalt transporter ATP-binding subunit
2160	 34.57	0	2356241..2357050	-	269	161510426	-	USA300HOU_2213	-	cobalt transporter ATP-binding subunit
2161	 37.40	+1	2357588..2357956	-	122	161510427	rplQ	USA300HOU_2214	-	50S ribosomal protein L17
2162	 33.76	0	2357973..2358917	-	314	161510428	rpoA	USA300HOU_2215	-	DNA-directed RNA polymerase subunit alpha
2163	 40.00	+1	2358992..2359381	-	129	161510429	rpsK	USA300HOU_2216	-	30S ribosomal protein S11
2164	 39.07	+1	2359405..2359770	-	121	161510430	rpsM	USA300HOU_2217	-	30S ribosomal protein S13
2165	 28.95	0	2359793..2359906	-	37	161510431	rmpJ	USA300HOU_2218	-	50S ribosomal protein L36
2166	 33.33	0	2359938..2360156	-	72	161510432	infA	USA300HOU_2219	-	translation initiation factor IF-1
2167	 35.65	0	2360349..2360996	-	215	161510433	adk	USA300HOU_2220	-	adenylate kinase
2168	 34.57	0	2361013..2362305	-	430	161510434	secY1	USA300HOU_2221	-	preprotein translocase subunit SecY
2169	 38.78	+1	2362305..2362745	-	146	161510435	rplO	USA300HOU_2222	-	50S ribosomal protein L15
2170	 35.56	0	2362762..2362941	-	59	161510436	rpmD	USA300HOU_2223	-	50S ribosomal protein L30
2171	 40.72	+2	2362958..2363458	-	166	161510437	rpsE	USA300HOU_2224	-	30S ribosomal protein S5
2172	 35.56	0	2363479..2363838	-	119	161510438	rplR	USA300HOU_2225	-	50S ribosomal protein L18
2173	 35.20	0	2363869..2364405	-	178	161510439	rplF	USA300HOU_2226	-	50S ribosomal protein L6
2174	 34.09	0	2364430..2364828	-	132	161510440	rpsH	USA300HOU_2227	-	30S ribosomal protein S8
2175	 38.71	+1	2364860..2365045	-	61	161510441	-	USA300HOU_2228	-	30S ribosomal protein S14
2176	 34.26	0	2365068..2365607	-	179	161510442	rplE	USA300HOU_2229	-	50S ribosomal protein L5
2177	 33.65	0	2365634..2365951	-	105	161510443	rplX	USA300HOU_2230	-	50S ribosomal protein L24
2178	 40.92	+2	2365987..2366355	-	122	161510444	rplN	USA300HOU_2231	-	50S ribosomal protein L14
2179	 30.30	0	2366387..2366650	-	87	161510445	rpsQ	USA300HOU_2232	-	30S ribosomal protein S17
2180	 34.29	0	2366674..2366883	-	69	161510446	rpmC	USA300HOU_2233	-	50S ribosomal protein L29
2181	 35.73	0	2372441..2373775	-	444	161510447	-	USA300HOU_2234	-	NCS2 family nucleobase:cation symporter-2
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.