IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2039	 30.61	0	2217767..2218207	+	146	161510305	-	USA300HOU_2088	-	hypothetical protein
2040	 33.33	0	2218266..2218706	-	146	161510306	fabZ	USA300HOU_2089	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
2041	 36.10	0	2218740..2220005	-	421	161510307	murA	USA300HOU_2090	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2042	 28.63	-1	2220116..2220349	-	77	161510308	-	USA300HOU_2091	-	hypothetical protein
2043	 36.54	+1	2220911..2221315	-	134	161510309	atpC	USA300HOU_2092	-	F0F1 ATP synthase subunit epsilon
2044	 38.64	+1	2221335..2222747	-	470	161510310	atpD	USA300HOU_2093	-	F0F1 ATP synthase subunit beta
2045	 34.95	0	2222769..2223635	-	288	161510311	atpG	USA300HOU_2094	-	F0F1 ATP synthase subunit gamma
2046	 36.98	+1	2223666..2225174	-	502	161510312	atpA	USA300HOU_2095	-	F0F1 ATP synthase subunit alpha
2047	 30.19	0	2225196..2225735	-	179	161510313	atpH	USA300HOU_2096	-	F0F1 ATP synthase subunit delta
2048	 36.02	0	2225735..2226256	-	173	161510314	atpF	USA300HOU_2097	-	F0F1 ATP synthase subunit B
2049	 40.38	+2	2226454..2226666	-	70	161510315	atpE	USA300HOU_2098	-	F0F1 ATP synthase subunit C
2050	 35.53	0	2226709..2227437	-	242	161510316	atpB	USA300HOU_2099	-	F0F1 ATP synthase subunit A
2051	 30.23	0	2227458..2227811	-	117	161510317	-	USA300HOU_2100	-	hypothetical protein
2052	 34.57	0	2227978..2229108	-	376	161510318	mnaA	USA300HOU_2101	-	UDP-GlcNAc 2-epimerase
2053	 36.51	+1	2229129..2229758	-	209	161510319	upp	USA300HOU_2102	-	uracil phosphoribosyltransferase
2054	 36.97	+1	2229786..2231024	-	412	161510320	glyA	USA300HOU_2103	-	serine hydroxymethyltransferase
2055	 36.95	+1	2231051..2231575	-	174	161510321	-	USA300HOU_2104	-	hypothetical protein
2056	 34.53	0	2233228..2234064	-	278	161510322	-	USA300HOU_2105	-	HemK family methyltransferase
2057	 35.19	0	2234051..2235127	-	358	161510323	prfA	USA300HOU_2106	-	peptide chain release factor 1
2058	 37.00	+1	2235128..2235727	-	199	161510324	tdk	USA300HOU_2107	-	thymidine kinase
2059	 35.69	0	2236074..2236328	-	84	161510325	rpmE	USA300HOU_2108	-	50S ribosomal protein L31 type B
2060	 35.74	0	2236446..2237777	-	443	161510326	rho	USA300HOU_2109	-	transcription termination factor Rho
2061	 36.20	0	2238009..2239436	-	475	161510327	aldA	USA300HOU_2110	-	aldehyde dehydrogenase
2062	 35.40	0	2239674..2240012	-	112	161510328	-	USA300HOU_2111	-	hypothetical protein
2063	 34.92	0	2240098..2241357	-	419	161510329	murZ	USA300HOU_2112	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2064	 36.59	+1	2241823..2242683	-	286	161510330	fbaA	USA300HOU_2113	-	fructose-bisphosphate aldolase
2065	 31.42	0	2242901..2243422	+	173	161510331	-	USA300HOU_2114	-	hypothetical protein
2066	 33.89	0	2243531..2245141	-	536	161510332	pyrG	USA300HOU_2115	-	CTP synthetase
2067	 32.58	0	2245477..2246007	-	176	161510333	rpoE2	USA300HOU_2116	-	DNA-directed RNA polymerase subunit delta
2068	 25.00	-2	2245973..2246116	-	47	161510334	-	USA300HOU_2117	-	hypothetical protein
2069	 32.40	0	2246119..2246979	-	286	161510335	-	USA300HOU_2118	-	acetyltransferase
2070	 37.31	+1	2247403..2248206	+	267	161510336	coaA	USA300HOU_2119	-	pantothenate kinase
2071	 32.29	0	2248336..2249007	-	223	161510337	-	USA300HOU_2120	-	hypothetical protein
2072	 34.25	0	2249406..2250599	-	397	161510338	-	USA300HOU_2121	-	hypothetical protein
2073	 36.96	+1	2250599..2251783	-	394	161510339	hmrA	USA300HOU_2122	-	M20D subfamily peptidase
2074	 34.39	0	2252094..2252564	+	156	161510340	luxS	USA300HOU_2123	-	S-ribosylhomocysteinase
2075	 31.62	0	2252716..2253066	-	116	161510341	-	USA300HOU_2124	-	hypothetical protein
2076	 35.87	0	2253080..2254420	-	446	161510342	pdp	USA300HOU_2125	-	pyrimidine-nucleoside phosphorylase
2077	 40.57	+2	2254660..2255322	-	220	161510343	deoC2	USA300HOU_2126	-	deoxyribose-phosphate aldolase
2078	 34.46	0	2255637..2256347	+	236	161510344	deoD2	USA300HOU_2127	-	purine nucleoside phosphorylase
2079	 34.01	0	2256468..2256911	-	147	161510345	dps	USA300HOU_2128	-	Dps family stress protein
2080	 32.37	0	2257111..2257524	-	137	161510346	-	USA300HOU_2129	-	hypothetical protein
2081	 31.95	0	2257982..2259355	-	457	161510347	-	USA300HOU_2130	-	hypothetical protein
2082	 36.67	+1	2260027..2260266	-	79	161510348	-	USA300HOU_2131	-	hypothetical protein
2083	 34.72	0	2260288..2261226	-	312	161510349	manA1	USA300HOU_2132	-	mannose-6-phosphate isomerase
2084	 34.68	0	2261661..2262326	-	221	161510350	-	USA300HOU_2133	-	hypothetical protein
2085	 34.58	0	2262478..2262798	+	106	161510351	czrA	USA300HOU_2134	-	transcriptional regulator CzrA
2086	 33.23	0	2262800..2263780	+	326	161510352	czrB	USA300HOU_2135	-	CDF family cation diffusion facilitator
2087	 24.24	-2	2263846..2263944	+	32	161510353	-	USA300HOU_2136	-	hypothetical protein
2088	 27.20	-1	2264046..2265137	+	363	161510354	-	USA300HOU_2137	-	lytic regulatory protein
2089	 29.52	0	2265637..2265741	-	34	161510355	-	USA300HOU_2138	-	hypothetical protein
2090	 25.86	-1	2266428..2267564	-	378	161510356	-	USA300HOU_2140	-	SAP domain-containing protein
2091	 18.28	-2	2267853..2267945	+	30	161510357	-	USA300HOU_2141	-	hypothetical protein
2092	 27.93	-1	2268002..2268112	-	36	161510358	-	USA300HOU_2142	-	hypothetical protein
2093	 33.45	0	2268650..2269507	-	285	161510359	-	USA300HOU_2143	-	HAD family phosphatase
2094	 35.38	0	2269575..2270357	-	260	161510360	-	USA300HOU_2144	-	ABC transporter ATP-binding protein
2095	 35.14	0	2270589..2272412	-	607	161510361	glmS	USA300HOU_2145	-	D-fructose-6-phosphate amidotransferase
2096	 35.74	0	2273075..2274613	+	512	161510362	mtlF	USA300HOU_2146	-	PTS family fructose/mannitol (fru) porter component IIBC
2097	 33.33	0	2274648..2276780	+	710	161510363	bglG	USA300HOU_2147	-	transcriptional antiterminator
2098	 35.86	0	2276792..2277226	+	144	161510364	mtlA	USA300HOU_2148	-	PTS family fructose/mannitol (fru) porter component IIA
2099	 32.88	0	2277226..2278332	+	368	161510365	mtlD	USA300HOU_2149	-	mannitol-1-phosphate 5-dehydrogenase
2100	 34.66	0	2286364..2287719	-	451	161510366	glmM	USA300HOU_2151	-	phosphoglucosamine mutase
2101	 30.12	0	2287746..2288678	-	310	161510367	-	USA300HOU_2152	-	hypothetical protein
2102	 33.70	0	2288680..2289489	-	269	161510368	-	USA300HOU_2153	-	hypothetical protein
2103	 31.68	0	2289678..2290586	-	302	161510369	arg	USA300HOU_2154	-	arginase
2104	 30.76	0	2290812..2292014	+	400	161510370	-	USA300HOU_2155	-	transposase
2105	 32.38	0	2292150..2292254	+	34	161510371	-	USA300HOU_2156	-	hypothetical protein
2106	 36.53	+1	2298181..2299245	-	354	161510372	-	USA300HOU_2157	-	ATP-binding protein
2107	 33.47	0	2299393..2300838	-	481	161510373	-	USA300HOU_2158	-	major facilitator transporter
2108	 27.00	-1	2301157..2301630	-	157	161510374	-	USA300HOU_2159	-	hypothetical protein
2109	 30.73	0	2301729..2303072	-	447	161510375	-	USA300HOU_2160	-	major facilitator transporter
2110	 31.73	0	2303249..2303935	-	228	161510376	-	USA300HOU_2161	-	hemolysin III
2111	 31.40	0	2303951..2305138	-	395	161510377	-	USA300HOU_2162	-	UTP--glucose-1-phosphate uridylyltransferase
2112	 33.91	0	2305182..2305697	-	171	161510378	-	USA300HOU_2163	-	hypothetical protein
2113	 30.65	0	2305874..2306134	+	86	161510379	-	USA300HOU_2164	-	hypothetical protein
2114	 29.63	0	2306127..2306234	-	35	161510380	-	USA300HOU_2165	-	hypothetical protein
2115	 35.74	0	2306266..2307636	-	456	161510381	-	USA300HOU_2166	-	hypothetical protein
2116	 33.54	0	2307872..2308840	-	322	161510382	-	USA300HOU_2167	-	iron (Fe3+) ABC transporter membrane protein
2117	 34.30	0	2308837..2309868	-	343	161510383	-	USA300HOU_2168	-	iron (Fe3+) ABC transporter membrane protein
2118	 30.79	0	2309880..2310863	-	327	161510384	-	USA300HOU_2169	-	iron (Fe3+) ABC transporter binding protein
2119	 31.09	0	2311255..2312325	-	356	161510385	-	USA300HOU_2170	-	hypothetical protein
2120	 32.59	0	2312332..2314089	-	585	161510386	-	USA300HOU_2171	-	hypothetical protein
2121	 31.99	0	2314076..2315269	-	397	161510387	-	USA300HOU_2172	-	major facilitator transporter
2122	 32.68	0	2315371..2317347	+	658	161510388	-	USA300HOU_2173	-	hypothetical protein
2123	 32.75	0	2319463..2319972	-	169	161510389	asp23	USA300HOU_2175	-	alkaline shock protein 23
2124	 30.42	0	2320035..2320274	-	79	161510390	-	USA300HOU_2176	-	hypothetical protein
2125	 33.33	0	2320287..2320835	-	182	161510391	-	USA300HOU_2177	-	hypothetical protein
2126	 35.89	0	2320998..2322560	-	520	161510392	-	USA300HOU_2178	-	BCCT family betaine/carnitine/choline transporter
2127	 34.63	0	2322867..2323868	-	333	161510393	-	USA300HOU_2179	-	alcohol dehydrogenase
2128	 38.01	+1	2324102..2325106	-	334	161510394	-	USA300HOU_2180	-	alcohol dehydrogenase
2129	 33.68	0	2325386..2326255	-	289	161510395	-	USA300HOU_2181	-	hypothetical protein
2130	 34.75	0	2326521..2327933	-	470	161510396	lacG	USA300HOU_2182	-	6-phospho-beta-galactosidase
2131	 35.83	0	2327951..2329669	-	572	161510397	lacE	USA300HOU_2183	-	PTS family lactose-N,N-diacetylchitobiose-beta-glucoside (lac) porter component IIBC
2132	 36.54	+1	2329669..2329980	-	103	161510398	lacF	USA300HOU_2184	-	PTS system, lactose-specific IIA component
2133	 35.07	0	2330002..2330982	-	326	161510399	lacD	USA300HOU_2185	-	tagatose 1,6-diphosphate aldolase
2134	 34.94	0	2330986..2331918	-	310	161510400	lacC	USA300HOU_2186	-	tagatose-6-phosphate kinase
2135	 34.69	0	2331931..2332446	-	171	161510401	lacB	USA300HOU_2187	-	galactose-6-phosphate isomerase subunit LacB
2136	 36.60	+1	2332462..2332890	-	142	161510402	lacA	USA300HOU_2188	-	galactose-6-phosphate isomerase subunit LacA
2137	 34.22	0	2333258..2334049	-	263	161510403	lacR	USA300HOU_2189	-	lactose phosphotransferase system repressor
2138	 36.17	0	2334255..2334995	+	246	161510404	-	USA300HOU_2190	-	NAD-dependent deacetylase
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.