IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.63   STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1991	 32.93	0	2154426..2155676	-	416	161510257	amtB	USA300HOU_2040	-	ammonium transporter
1992	 35.11	0	2155884..2156108	-	74	161510258	-	USA300HOU_2041	-	hypothetical protein
1993	 36.20	0	2156168..2157247	-	359	161510259	-	USA300HOU_2042	-	hypothetical protein
1994	 30.48	0	2160728..2162338	+	536	161510260	mutS2	USA300HOU_2043	-	DNA mismatch repair protein MutS
1995	 37.91	+1	2162440..2163465	-	341	161510261	-	USA300HOU_2044	-	O-sialoglycoprotein endopeptidase
1996	 32.04	0	2163458..2163922	-	154	161510262	-	USA300HOU_2045	-	ribosomal-protein-alanine acetyltransferase
1997	 35.29	0	2163895..2164557	-	220	161510263	-	USA300HOU_2046	-	hypothetical protein
1998	 30.51	0	2164538..2165032	-	164	161510264	-	USA300HOU_2047	-	hypothetical protein
1999	 40.32	+2	2165510..2167198	+	562	161510265	ilvD	USA300HOU_2048	-	dihydroxy-acid dehydratase
2000	 36.61	+1	2167226..2168995	+	589	161510266	ilvB1	USA300HOU_2049	-	acetolactate synthase large subunit
2001	 30.98	0	2168995..2169249	+	84	161510267	ilvH	USA300HOU_2050	-	acetolactate synthase 1 regulatory subunit
2002	 35.12	0	2169386..2170390	+	334	161510268	ilvC	USA300HOU_2051	-	ketol-acid reductoisomerase
2003	 36.27	0	2170420..2171949	+	509	161510269	leuA2	USA300HOU_2052	-	2-isopropylmalate synthase
2004	 35.72	0	2171952..2172998	+	348	161510270	leuB	USA300HOU_2053	-	3-isopropylmalate dehydrogenase
2005	 37.93	+1	2173012..2174382	+	456	161510271	leuC	USA300HOU_2054	-	isopropylmalate isomerase large subunit
2006	 34.38	0	2174383..2174955	+	190	161510272	leuD	USA300HOU_2055	-	isopropylmalate isomerase small subunit
2007	 32.07	0	2174970..2176238	+	422	161510273	ilvA2	USA300HOU_2056	-	threonine dehydratase
2008	 33.55	0	2182358..2182813	-	151	161510274	-	USA300HOU_2057	-	hypothetical protein
2009	 33.47	0	2182806..2184956	-	716	161510275	-	USA300HOU_2058	-	RNA-binding protein
2010	 35.02	0	2185390..2186160	-	256	161510276	fliA	USA300HOU_2059	-	RNA polymerase sigma factor SigB
2011	 32.71	0	2186135..2186614	-	159	161510277	rsbW	USA300HOU_2060	-	serine-protein kinase RsbW
2012	 31.80	0	2186616..2186942	-	108	161510278	rsbV	USA300HOU_2061	-	anti-sigma B factor antagonist
2013	 31.34	0	2187061..2188062	-	333	161510279	rsbU	USA300HOU_2062	-	sigma factor B regulator
2014	 33.33	0	2188412..2188774	-	120	161510280	pemK	USA300HOU_2063	-	PemK family transcriptional regulator
2015	 33.33	0	2188771..2188941	-	56	161510281	-	USA300HOU_2064	-	hypothetical protein
2016	 36.12	0	2189026..2190174	-	382	161510282	alr2	USA300HOU_2065	-	alanine racemase
2017	 35.56	0	2190240..2190599	-	119	161510283	acpS	USA300HOU_2066	-	holo-[acyl-carrier-protein] synthase
2018	 33.94	0	2190603..2191097	-	164	161510284	-	USA300HOU_2067	-	hypothetical protein
2019	 31.57	0	2191081..2192664	-	527	161510285	-	USA300HOU_2068	-	hypothetical protein
2020	 30.00	0	2192657..2193136	-	159	161510286	-	USA300HOU_2069	-	hypothetical protein
2021	 36.01	0	2193344..2193904	-	186	161510287	kdpC	USA300HOU_2070	-	P-ATPase superfamily P-type ATPase potassium (K+) transporter subunit C
2022	 34.66	0	2193924..2195951	-	675	161510288	kdpB	USA300HOU_2071	-	P-ATPase superfamily P-type ATPase potassium (K+) transporter subunit B
2023	 32.56	0	2195970..2197646	-	558	161510289	kdpA	USA300HOU_2072	-	potassium-transporting ATPase subunit A
2024	 29.73	0	2197670..2197780	-	36	161510290	-	USA300HOU_2073	-	hypothetical protein
2025	 31.87	0	2197918..2200575	+	885	161510291	kdpD	USA300HOU_2074	-	sensor histidine kinase KdpD
2026	 32.61	0	2200575..2201270	+	231	161510292	kdpE	USA300HOU_2075	-	KDP operon transcriptional regulator
2027	 36.42	+1	2201639..2203159	-	506	161510293	-	USA300HOU_2076	-	ATP-dependent RNA helicase
2028	 33.04	0	2203676..2205034	-	452	161510294	murF	USA300HOU_2077	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
2029	 33.80	0	2205049..2206119	-	356	161510295	ddlA	USA300HOU_2078	-	D-alanyl-alanine synthetase A
2030	 33.00	0	2206437..2207639	+	400	161510296	-	USA300HOU_2079	-	FtsW/RodA/SpoVE family cell division protein
2031	 26.81	-1	2207903..2208040	-	45	161510297	-	USA300HOU_2080	-	hypothetical protein
2032	 30.00	0	2208168..2208377	-	69	161510298	-	USA300HOU_2081	-	hypothetical protein
2033	 33.33	0	2208389..2208682	-	97	161510299	-	USA300HOU_2082	-	hypothetical protein
2034	 32.66	0	2208848..2210332	+	494	161510300	cls2	USA300HOU_2083	-	cardiolipin synthetase
2035	 34.41	0	2210360..2211007	+	215	161510301	-	USA300HOU_2084	-	hypothetical protein
2036	 45.37	+2	2211067..2211174	-	35	161510302	-	USA300HOU_2085	-	hypothetical protein
2037	 44.09	+2	2211182..2211274	-	30	161510303	-	USA300HOU_2086	-	hypothetical protein
2038	 33.73	0	2211820..2212575	-	251	161510304	-	USA300HOU_2087	-	hypothetical protein
2039	 30.61	0	2217767..2218207	+	146	161510305	-	USA300HOU_2088	-	hypothetical protein
2040	 33.33	0	2218266..2218706	-	146	161510306	fabZ	USA300HOU_2089	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
2041	 36.10	0	2218740..2220005	-	421	161510307	murA	USA300HOU_2090	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2042	 28.63	-1	2220116..2220349	-	77	161510308	-	USA300HOU_2091	-	hypothetical protein
2043	 36.54	+1	2220911..2221315	-	134	161510309	atpC	USA300HOU_2092	-	F0F1 ATP synthase subunit epsilon
2044	 38.64	+1	2221335..2222747	-	470	161510310	atpD	USA300HOU_2093	-	F0F1 ATP synthase subunit beta
2045	 34.95	0	2222769..2223635	-	288	161510311	atpG	USA300HOU_2094	-	F0F1 ATP synthase subunit gamma
2046	 36.98	+1	2223666..2225174	-	502	161510312	atpA	USA300HOU_2095	-	F0F1 ATP synthase subunit alpha
2047	 30.19	0	2225196..2225735	-	179	161510313	atpH	USA300HOU_2096	-	F0F1 ATP synthase subunit delta
2048	 36.02	0	2225735..2226256	-	173	161510314	atpF	USA300HOU_2097	-	F0F1 ATP synthase subunit B
2049	 40.38	+2	2226454..2226666	-	70	161510315	atpE	USA300HOU_2098	-	F0F1 ATP synthase subunit C
2050	 35.53	0	2226709..2227437	-	242	161510316	atpB	USA300HOU_2099	-	F0F1 ATP synthase subunit A
2051	 30.23	0	2227458..2227811	-	117	161510317	-	USA300HOU_2100	-	hypothetical protein
2052	 34.57	0	2227978..2229108	-	376	161510318	mnaA	USA300HOU_2101	-	UDP-GlcNAc 2-epimerase
2053	 36.51	+1	2229129..2229758	-	209	161510319	upp	USA300HOU_2102	-	uracil phosphoribosyltransferase
2054	 36.97	+1	2229786..2231024	-	412	161510320	glyA	USA300HOU_2103	-	serine hydroxymethyltransferase
2055	 36.95	+1	2231051..2231575	-	174	161510321	-	USA300HOU_2104	-	hypothetical protein
2056	 34.53	0	2233228..2234064	-	278	161510322	-	USA300HOU_2105	-	HemK family methyltransferase
2057	 35.19	0	2234051..2235127	-	358	161510323	prfA	USA300HOU_2106	-	peptide chain release factor 1
2058	 37.00	+1	2235128..2235727	-	199	161510324	tdk	USA300HOU_2107	-	thymidine kinase
2059	 35.69	0	2236074..2236328	-	84	161510325	rpmE	USA300HOU_2108	-	50S ribosomal protein L31 type B
2060	 35.74	0	2236446..2237777	-	443	161510326	rho	USA300HOU_2109	-	transcription termination factor Rho
2061	 36.20	0	2238009..2239436	-	475	161510327	aldA	USA300HOU_2110	-	aldehyde dehydrogenase
2062	 35.40	0	2239674..2240012	-	112	161510328	-	USA300HOU_2111	-	hypothetical protein
2063	 34.92	0	2240098..2241357	-	419	161510329	murZ	USA300HOU_2112	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2064	 36.59	+1	2241823..2242683	-	286	161510330	fbaA	USA300HOU_2113	-	fructose-bisphosphate aldolase
2065	 31.42	0	2242901..2243422	+	173	161510331	-	USA300HOU_2114	-	hypothetical protein
2066	 33.89	0	2243531..2245141	-	536	161510332	pyrG	USA300HOU_2115	-	CTP synthetase
2067	 32.58	0	2245477..2246007	-	176	161510333	rpoE2	USA300HOU_2116	-	DNA-directed RNA polymerase subunit delta
2068	 25.00	-2	2245973..2246116	-	47	161510334	-	USA300HOU_2117	-	hypothetical protein
2069	 32.40	0	2246119..2246979	-	286	161510335	-	USA300HOU_2118	-	acetyltransferase
2070	 37.31	+1	2247403..2248206	+	267	161510336	coaA	USA300HOU_2119	-	pantothenate kinase
2071	 32.29	0	2248336..2249007	-	223	161510337	-	USA300HOU_2120	-	hypothetical protein
2072	 34.25	0	2249406..2250599	-	397	161510338	-	USA300HOU_2121	-	hypothetical protein
2073	 36.96	+1	2250599..2251783	-	394	161510339	hmrA	USA300HOU_2122	-	M20D subfamily peptidase
2074	 34.39	0	2252094..2252564	+	156	161510340	luxS	USA300HOU_2123	-	S-ribosylhomocysteinase
2075	 31.62	0	2252716..2253066	-	116	161510341	-	USA300HOU_2124	-	hypothetical protein
2076	 35.87	0	2253080..2254420	-	446	161510342	pdp	USA300HOU_2125	-	pyrimidine-nucleoside phosphorylase
2077	 40.57	+2	2254660..2255322	-	220	161510343	deoC2	USA300HOU_2126	-	deoxyribose-phosphate aldolase
2078	 34.46	0	2255637..2256347	+	236	161510344	deoD2	USA300HOU_2127	-	purine nucleoside phosphorylase
2079	 34.01	0	2256468..2256911	-	147	161510345	dps	USA300HOU_2128	-	Dps family stress protein
2080	 32.37	0	2257111..2257524	-	137	161510346	-	USA300HOU_2129	-	hypothetical protein
2081	 31.95	0	2257982..2259355	-	457	161510347	-	USA300HOU_2130	-	hypothetical protein
2082	 36.67	+1	2260027..2260266	-	79	161510348	-	USA300HOU_2131	-	hypothetical protein
2083	 34.72	0	2260288..2261226	-	312	161510349	manA1	USA300HOU_2132	-	mannose-6-phosphate isomerase
2084	 34.68	0	2261661..2262326	-	221	161510350	-	USA300HOU_2133	-	hypothetical protein
2085	 34.58	0	2262478..2262798	+	106	161510351	czrA	USA300HOU_2134	-	transcriptional regulator CzrA
2086	 33.23	0	2262800..2263780	+	326	161510352	czrB	USA300HOU_2135	-	CDF family cation diffusion facilitator
2087	 24.24	-2	2263846..2263944	+	32	161510353	-	USA300HOU_2136	-	hypothetical protein
2088	 27.20	-1	2264046..2265137	+	363	161510354	-	USA300HOU_2137	-	lytic regulatory protein
2089	 29.52	0	2265637..2265741	-	34	161510355	-	USA300HOU_2138	-	hypothetical protein
2090	 25.86	-1	2266428..2267564	-	378	161510356	-	USA300HOU_2140	-	SAP domain-containing protein
32.63	MEAN

3.73	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.