IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1865	 35.65	0	2053564..2054859	-	431	161510131	purB	USA300HOU_1909	-	adenylosuccinate lyase
1866	 31.28	0	2055720..2056886	+	388	161510132	-	USA300HOU_1910	-	C47 family staphopain protease
1867	 25.99	-1	2056917..2057243	+	108	161510133	-	USA300HOU_1911	-	hypothetical protein
1868	 33.91	0	2057535..2057708	-	57	161510134	-	USA300HOU_1912	-	hypothetical protein
1869	 32.17	0	2057689..2058291	-	200	161510135	-	USA300HOU_1913	-	hypothetical protein
1870	 34.31	0	2058562..2059383	-	273	161510136	nadE	USA300HOU_1914	-	NAD synthetase
1871	 33.40	0	2059376..2060845	-	489	161510137	-	USA300HOU_1915	-	nicotinate phosphoribosyltransferase
1872	 33.52	0	2061029..2062105	+	358	161510138	-	USA300HOU_1916	-	nitric-oxide synthase, oxygenase subunit
1873	 32.83	0	2062125..2062919	+	264	161510139	pheA	USA300HOU_1917	-	prephenate dehydratase
1874	 34.23	0	2063109..2064671	-	520	161510140	-	USA300HOU_1918	-	DASS family divalent anion:sodium (Na+) symporter
1875	 33.06	0	2064876..2065973	-	365	161510141	-	USA300HOU_1919	-	hypothetical protein
1876	 34.58	0	2066345..2066905	+	186	161510142	-	USA300HOU_1920	-	nicotinamidase
1877	 33.87	0	2066958..2067887	+	309	161510143	ppaC	USA300HOU_1921	-	putative manganese-dependent inorganic pyrophosphatase
1878	 25.29	-1	2068082..2068255	-	57	161510144	-	USA300HOU_1922	-	hypothetical protein
1879	 33.84	0	2068307..2069686	+	459	161510145	aldH1	USA300HOU_1923	-	aldehyde dehydrogenase
1880	 22.22	-2	2069676..2069792	-	38	161510146	-	USA300HOU_1924	-	hypothetical protein
1881	 32.85	0	2069806..2070834	-	342	161510147	-	USA300HOU_1925	-	hypothetical protein
1882	 33.33	0	2071104..2071505	+	133	161510148	-	USA300HOU_1926	-	hypothetical protein
1883	 24.14	-2	2072078..2072251	-	57	161510149	-	USA300HOU_1927	-	hypothetical protein
1884	 34.10	0	2072702..2073742	+	346	161510150	-	USA300HOU_1928	-	C40 family peptidase
1885	 29.30	0	2073799..2074641	-	280	161510151	-	USA300HOU_1929	-	hypothetical protein
1886	 29.03	0	2074638..2075195	-	185	161510152	-	USA300HOU_1930	-	hypothetical protein
1887	 27.81	-1	2075255..2075779	-	174	161510153	-	USA300HOU_1931	-	hypothetical protein
1888	 31.74	0	2075900..2076463	+	187	161510154	-	USA300HOU_1932	-	hypothetical protein
1889	 27.13	-1	2076529..2077269	-	246	161510155	-	USA300HOU_1933	-	hypothetical protein
1890	 28.98	0	2077269..2078141	-	290	161510156	-	USA300HOU_1934	-	ABC transporter ATP-binding protein
1891	 26.43	-1	2078138..2078818	-	226	161510157	-	USA300HOU_1935	-	hypothetical protein
1892	 30.99	0	2078819..2079715	-	298	161510158	-	USA300HOU_1936	-	ABC transporter ATP-binding protein
1893	 32.46	0	2079712..2080167	-	151	161510159	-	USA300HOU_1937	-	GntR family transcriptional regulator
1894	 23.73	-2	2080356..2080532	-	58	161510160	-	USA300HOU_1938	-	hypothetical protein
1895	 33.33	0	2080775..2080873	-	32	161510161	-	USA300HOU_1939	-	hypothetical protein
1896	 33.41	0	2081073..2082359	+	428	161510162	-	USA300HOU_1940	-	hypothetical protein
1897	 27.52	-1	2082984..2084738	-	584	161510163	mapW2	USA300HOU_1942	-	cell surface protein MapW2
1898	 26.67	-1	2085696..2085875	+	59	161510164	-	USA300HOU_1944	-	hypothetical protein
1899	 28.85	-1	2085955..2086110	-	51	161510165	-	USA300HOU_1945	-	hypothetical protein
1900	 29.06	0	2086499..2086849	-	116	161510166	-	USA300HOU_1946	-	hypothetical protein
1901	 28.22	-1	2087534..2087983	+	149	161510167	chp	USA300HOU_1947	-	chemotaxis-inhibiting protein CHIPS
1902	 32.32	0	2089063..2089554	-	163	161510168	sak	USA300HOU_1949	-	staphylokinase
1903	 26.14	-1	2089457..2089609	+	50	161510169	-	USA300HOU_1950	-	hypothetical protein
1904	 35.19	0	2089745..2090500	-	251	161510170	ami	USA300HOU_1951	-	N-acetylmuramoyl-L-alanine amidase
1905	 32.55	0	2090512..2090766	-	84	161510171	-	USA300HOU_1952	-	holin
1906	 31.11	0	2090978..2091112	-	44	161510172	-	USA300HOU_1953	-	hypothetical protein
1907	 32.66	0	2091304..2091600	-	98	161510173	-	USA300HOU_1954	-	hypothetical protein
1908	 30.90	0	2091658..2091945	-	95	161510174	-	USA300HOU_1955	-	hypothetical protein
1909	 30.72	0	2091992..2092144	-	50	161510175	-	USA300HOU_1956	-	hypothetical protein
1910	 35.29	0	2092134..2095919	-	1261	161510176	-	USA300HOU_1957	-	hypothetical protein
1911	 34.55	0	2095935..2097419	-	494	161510177	-	USA300HOU_1958	-	hypothetical protein
1912	 35.78	0	2097416..2101945	-	1509	161510178	-	USA300HOU_1959	-	bacteriophage tail length tape measure protein
1913	 28.15	-1	2102002..2102136	-	44	161510179	-	USA300HOU_1960	-	hypothetical protein
1914	 33.33	0	2102190..2102540	-	116	161510180	-	USA300HOU_1961	-	hypothetical protein
1915	 36.90	+1	2102856..2103500	-	214	161510181	-	USA300HOU_1962	-	hypothetical protein
1916	 32.10	0	2103504..2103908	-	134	161510182	-	USA300HOU_1963	-	hypothetical protein
1917	 34.32	0	2103905..2104309	-	134	161510183	-	USA300HOU_1964	-	hypothetical protein
1918	 30.85	0	2104306..2104668	-	120	161510184	-	USA300HOU_1965	-	hypothetical protein
1919	 30.88	0	2104652..2104936	-	94	161510185	-	USA300HOU_1966	-	hypothetical protein
1920	 32.98	0	2104926..2105210	-	94	161510186	-	USA300HOU_1967	-	hypothetical protein
1921	 35.25	0	2105230..2106375	-	381	161510187	-	USA300HOU_1968	-	hypothetical protein
1922	 36.45	+1	2106399..2107136	-	245	161510188	-	USA300HOU_1969	-	endopeptidase ClpP
1923	 31.82	0	2107120..2108307	-	395	161510189	-	USA300HOU_1970	-	bacteriophage portal protein
1924	 32.67	0	2108323..2109984	-	553	161510190	-	USA300HOU_1971	-	terminase large subunit
1925	 33.62	0	2109981..2110325	-	114	161510191	-	USA300HOU_1972	-	hypothetical protein
1926	 32.00	0	2110455..2110754	-	99	161510192	-	USA300HOU_1973	-	hypothetical protein
1927	 34.77	0	2110986..2111402	-	138	161510193	-	USA300HOU_1974	-	hypothetical protein
1928	 29.85	0	2111430..2111630	-	66	161510194	-	USA300HOU_1975	-	hypothetical protein
1929	 37.33	+1	2111630..2111779	-	49	161510195	-	USA300HOU_1976	-	hypothetical protein
1930	 31.01	0	2111776..2112162	-	128	161510196	-	USA300HOU_1977	-	hypothetical protein
1931	 35.75	0	2112159..2112365	-	68	161510197	-	USA300HOU_1978	-	hypothetical protein
1932	 27.85	-1	2112362..2112598	-	78	161510198	-	USA300HOU_1979	-	hypothetical protein
1933	 40.64	+2	2112644..2113177	-	177	161510199	dut	USA300HOU_1980	-	dUTP diphosphatase
1934	 29.22	0	2113170..2113412	-	80	161510200	-	USA300HOU_1981	-	hypothetical protein
1935	 41.35	+2	2113402..2113638	-	78	161510201	-	USA300HOU_1982	-	hypothetical protein
1936	 38.71	+1	2113631..2114002	-	123	161510202	-	USA300HOU_1983	-	hypothetical protein
1937	 37.45	+1	2114011..2114253	-	80	161510203	-	USA300HOU_1984	-	hypothetical protein
1938	 39.30	+1	2114257..2114625	-	122	161510204	-	USA300HOU_1985	-	hypothetical protein
1939	 31.85	0	2114638..2115042	-	134	161510205	rusA	USA300HOU_1986	-	crossover junction endodeoxyribonuclease RusA
1940	 30.59	0	2115051..2115269	-	72	161510206	-	USA300HOU_1987	-	hypothetical protein
1941	 33.56	0	2115276..2116169	-	297	161510207	dnaD2	USA300HOU_1988	-	DNA replication protein DnaD
1942	 35.46	0	2116199..2116669	-	156	161510208	ssb2	USA300HOU_1989	-	single-stranded DNA-binding protein
1943	 34.57	0	2116670..2117155	-	161	161510209	-	USA300HOU_1990	-	hypothetical protein
1944	 33.66	0	2117368..2118288	-	306	161510210	recT	USA300HOU_1991	-	recombination protein RecT
1945	 30.37	0	2118290..2120245	-	651	161510211	-	USA300HOU_1992	-	hypothetical protein
1946	 32.62	0	2120242..2120520	-	92	161510212	-	USA300HOU_1993	-	hypothetical protein
1947	 33.33	0	2120514..2120774	-	86	161510213	-	USA300HOU_1994	-	hypothetical protein
1948	 34.10	0	2120814..2121074	-	86	161510214	-	USA300HOU_1995	-	hypothetical protein
1949	 37.65	+1	2121169..2121330	-	53	161510215	-	USA300HOU_1996	-	hypothetical protein
1950	 33.02	0	2121327..2121647	-	106	161510216	-	USA300HOU_1997	-	hypothetical protein
1951	 28.57	-1	2121706..2121936	+	76	161510217	-	USA300HOU_1998	-	hypothetical protein
1952	 31.64	0	2121933..2122109	-	58	161510218	-	USA300HOU_1999	-	hypothetical protein
1953	 35.86	0	2122125..2122877	-	250	161510219	-	USA300HOU_2000	-	bacteriophage antirepressor
1954	 31.21	0	2122928..2123257	+	109	161510220	-	USA300HOU_2001	-	hypothetical protein
1955	 39.35	+1	2123246..2123461	-	71	161510221	-	USA300HOU_2002	-	hypothetical protein
1956	 25.00	-2	2123477..2123740	-	87	161510222	-	USA300HOU_2003	-	transcriptional regulator
1957	 33.61	0	2123873..2124586	+	237	161510223	-	USA300HOU_2004	-	transcription regulator
1958	 26.47	-1	2124602..2125534	+	310	161510224	-	USA300HOU_2005	-	exodeoxyribonuclease
1959	 25.44	-1	2125540..2125881	+	113	161510225	-	USA300HOU_2006	-	hypothetical protein
1960	 27.87	-1	2126085..2126267	+	60	161510226	-	USA300HOU_2007	-	hypothetical protein
1961	 23.95	-2	2126345..2127058	+	237	161510227	-	USA300HOU_2008	-	hypothetical protein
1962	 30.64	0	2127249..2128286	+	345	161510228	int	USA300HOU_2009	-	bacteriophage integrase
1963	 30.48	0	2129405..2130421	-	338	161510229	-	USA300HOU_2011	-	leukocidin subunit
1964	 29.17	0	2130315..2130458	+	47	161510230	-	USA300HOU_2012	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.