IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1817	 30.89	0	2007727..2008872	+	381	161510083	-	USA300HOU_1860	-	hypothetical protein
1818	 32.87	0	2009063..2010799	-	578	161510084	-	USA300HOU_1861	-	ABC transporter ATP-binding protein
1819	 32.78	0	2011090..2011632	-	180	161510085	-	USA300HOU_1862	-	hypothetical protein
1820	 34.01	0	2011934..2012971	-	345	161510086	mutY	USA300HOU_1863	-	A/G-specific DNA glycosylase
1821	 35.17	0	2013123..2014100	+	325	161510087	-	USA300HOU_1864	-	hypothetical protein
1822	 28.67	-1	2014361..2015197	-	278	161510088	-	USA300HOU_1865	-	teichoic acid ABC transporter ATP-binding/membrane protein
1823	 30.17	0	2015206..2016723	-	505	161510089	-	USA300HOU_1866	-	teichoic acid ABC transporter ATP-binding protein
1824	 30.48	0	2016738..2017052	-	104	161510090	-	USA300HOU_1867	-	hypothetical protein
1825	 28.45	-1	2017030..2017848	-	272	161510091	-	USA300HOU_1868	-	recombination regulator RecX
1826	 30.74	0	2018109..2018918	-	269	161510092	-	USA300HOU_1869	-	glycosyltransferase
1827	 34.88	0	2019259..2019774	-	171	161510093	-	USA300HOU_1870	-	C56 family endopeptidase PfpI
1828	 30.86	0	2019905..2020066	-	53	161510094	-	USA300HOU_1871	-	hypothetical protein
1829	 33.68	0	2020290..2021441	+	383	161510095	-	USA300HOU_1872	-	hypothetical protein
1830	 35.97	0	2021701..2022231	-	176	161510096	-	USA300HOU_1873	-	hypothetical protein
1831	 33.73	0	2022321..2023577	-	418	161510097	pepS	USA300HOU_1874	-	M29 family aminopeptidase
1832	 31.94	0	2023580..2023795	-	71	161510098	-	USA300HOU_1875	-	hypothetical protein
1833	 34.96	0	2023869..2023991	-	40	161510099	-	USA300HOU_1876	-	hypothetical protein
1834	 33.33	0	2023975..2024391	+	138	161510100	-	USA300HOU_1877	-	protein-tyrosine-phosphatase
1835	 32.97	0	2024398..2024673	+	91	161510101	-	USA300HOU_1878	-	hypothetical protein
1836	 32.35	0	2024951..2026168	+	405	161510102	-	USA300HOU_1879	-	ribonuclease BN
1837	 33.81	0	2026284..2026913	-	209	161510103	vraR	USA300HOU_1880	-	response regulator VraR
1838	 31.70	0	2026903..2027946	-	347	161510104	vraS	USA300HOU_1881	-	sensor histidine kinase VraS
1839	 30.20	0	2027943..2028644	-	233	161510105	-	USA300HOU_1882	-	hypothetical protein
1840	 26.10	-1	2028659..2029045	-	128	161510106	-	USA300HOU_1883	-	hypothetical protein
1841	 35.84	0	2029262..2030020	-	252	161510107	map	USA300HOU_1884	-	methionine aminopeptidase
1842	 32.12	0	2030548..2031534	+	328	161510108	-	USA300HOU_1885	-	hypothetical protein
1843	 42.61	+2	2031545..2031835	-	96	161510109	-	USA300HOU_1886	-	hypothetical protein
1844	 26.93	-1	2032024..2032476	-	150	161510110	-	USA300HOU_1887	-	hypothetical protein
1845	 27.93	-1	2032466..2032576	-	36	161510111	-	USA300HOU_1888	-	hypothetical protein
1846	 30.87	0	2032662..2033393	-	243	161510112	-	USA300HOU_1889	-	adenosylcobyric acid synthase (glutamine-hydrolyzing)
1847	 34.25	0	2033395..2034708	-	437	161510113	murE2	USA300HOU_1890	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1848	 34.53	0	2035000..2035500	+	166	161510114	-	USA300HOU_1891	-	ferritin
1849	 27.96	-1	2035582..2035674	-	30	161510115	-	USA300HOU_1892	-	hypothetical protein
1850	 31.71	0	2035889..2036443	+	184	161510116	-	USA300HOU_1893	-	DNA-directed DNA polymerase III
1851	 34.58	0	2036511..2037551	-	346	161510117	-	USA300HOU_1894	-	DNA-directed DNA polymerase IV
1852	 29.00	0	2037828..2038358	-	176	161510118	-	USA300HOU_1895	-	hypothetical protein
1853	 33.11	0	2038528..2039889	-	453	161510119	-	USA300HOU_1896	-	TrmA family RNA methyltransferase
1854	 33.76	0	2039970..2040917	-	315	161510120	-	USA300HOU_1897	-	putative lipid kinase
1855	 23.81	-2	2041500..2041646	-	48	161510121	-	USA300HOU_1899	-	hypothetical protein
1856	 34.73	0	2041686..2043113	-	475	161510122	gatB2	USA300HOU_1900	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1857	 34.09	0	2043126..2044583	-	485	161510123	gatA2	USA300HOU_1901	-	glutamyl-tRNA(Gln) amidotransferase subunit A
1858	 35.64	0	2044585..2044887	-	100	161510124	gatC2	USA300HOU_1902	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1859	 35.87	0	2045254..2046792	+	512	161510125	putP	USA300HOU_1903	-	SSS family major sodium/proline symporter
1860	 30.68	0	2046881..2048086	-	401	161510126	camS	USA300HOU_1904	-	pheromone lipoprotein CamS
1861	 34.08	0	2048093..2050096	-	667	161510127	-	USA300HOU_1905	-	DNA ligase (NAD(+))
1862	 34.15	0	2050100..2052292	-	730	161510128	pcrA	USA300HOU_1906	-	ATP-dependent DNA helicase PcrA
1863	 33.48	0	2052289..2052981	-	230	161510129	pcrB	USA300HOU_1907	-	geranylgeranylglyceryl phosphate synthase-like protein
1864	 32.34	0	2053153..2053455	-	100	161510130	-	USA300HOU_1908	-	hypothetical protein
1865	 35.65	0	2053564..2054859	-	431	161510131	purB	USA300HOU_1909	-	adenylosuccinate lyase
1866	 31.28	0	2055720..2056886	+	388	161510132	-	USA300HOU_1910	-	C47 family staphopain protease
1867	 25.99	-1	2056917..2057243	+	108	161510133	-	USA300HOU_1911	-	hypothetical protein
1868	 33.91	0	2057535..2057708	-	57	161510134	-	USA300HOU_1912	-	hypothetical protein
1869	 32.17	0	2057689..2058291	-	200	161510135	-	USA300HOU_1913	-	hypothetical protein
1870	 34.31	0	2058562..2059383	-	273	161510136	nadE	USA300HOU_1914	-	NAD synthetase
1871	 33.40	0	2059376..2060845	-	489	161510137	-	USA300HOU_1915	-	nicotinate phosphoribosyltransferase
1872	 33.52	0	2061029..2062105	+	358	161510138	-	USA300HOU_1916	-	nitric-oxide synthase, oxygenase subunit
1873	 32.83	0	2062125..2062919	+	264	161510139	pheA	USA300HOU_1917	-	prephenate dehydratase
1874	 34.23	0	2063109..2064671	-	520	161510140	-	USA300HOU_1918	-	DASS family divalent anion:sodium (Na+) symporter
1875	 33.06	0	2064876..2065973	-	365	161510141	-	USA300HOU_1919	-	hypothetical protein
1876	 34.58	0	2066345..2066905	+	186	161510142	-	USA300HOU_1920	-	nicotinamidase
1877	 33.87	0	2066958..2067887	+	309	161510143	ppaC	USA300HOU_1921	-	putative manganese-dependent inorganic pyrophosphatase
1878	 25.29	-1	2068082..2068255	-	57	161510144	-	USA300HOU_1922	-	hypothetical protein
1879	 33.84	0	2068307..2069686	+	459	161510145	aldH1	USA300HOU_1923	-	aldehyde dehydrogenase
1880	 22.22	-2	2069676..2069792	-	38	161510146	-	USA300HOU_1924	-	hypothetical protein
1881	 32.85	0	2069806..2070834	-	342	161510147	-	USA300HOU_1925	-	hypothetical protein
1882	 33.33	0	2071104..2071505	+	133	161510148	-	USA300HOU_1926	-	hypothetical protein
1883	 24.14	-2	2072078..2072251	-	57	161510149	-	USA300HOU_1927	-	hypothetical protein
1884	 34.10	0	2072702..2073742	+	346	161510150	-	USA300HOU_1928	-	C40 family peptidase
1885	 29.30	0	2073799..2074641	-	280	161510151	-	USA300HOU_1929	-	hypothetical protein
1886	 29.03	0	2074638..2075195	-	185	161510152	-	USA300HOU_1930	-	hypothetical protein
1887	 27.81	-1	2075255..2075779	-	174	161510153	-	USA300HOU_1931	-	hypothetical protein
1888	 31.74	0	2075900..2076463	+	187	161510154	-	USA300HOU_1932	-	hypothetical protein
1889	 27.13	-1	2076529..2077269	-	246	161510155	-	USA300HOU_1933	-	hypothetical protein
1890	 28.98	0	2077269..2078141	-	290	161510156	-	USA300HOU_1934	-	ABC transporter ATP-binding protein
1891	 26.43	-1	2078138..2078818	-	226	161510157	-	USA300HOU_1935	-	hypothetical protein
1892	 30.99	0	2078819..2079715	-	298	161510158	-	USA300HOU_1936	-	ABC transporter ATP-binding protein
1893	 32.46	0	2079712..2080167	-	151	161510159	-	USA300HOU_1937	-	GntR family transcriptional regulator
1894	 23.73	-2	2080356..2080532	-	58	161510160	-	USA300HOU_1938	-	hypothetical protein
1895	 33.33	0	2080775..2080873	-	32	161510161	-	USA300HOU_1939	-	hypothetical protein
1896	 33.41	0	2081073..2082359	+	428	161510162	-	USA300HOU_1940	-	hypothetical protein
1897	 27.52	-1	2082984..2084738	-	584	161510163	mapW2	USA300HOU_1942	-	cell surface protein MapW2
1898	 26.67	-1	2085696..2085875	+	59	161510164	-	USA300HOU_1944	-	hypothetical protein
1899	 28.85	-1	2085955..2086110	-	51	161510165	-	USA300HOU_1945	-	hypothetical protein
1900	 29.06	0	2086499..2086849	-	116	161510166	-	USA300HOU_1946	-	hypothetical protein
1901	 28.22	-1	2087534..2087983	+	149	161510167	chp	USA300HOU_1947	-	chemotaxis-inhibiting protein CHIPS
1902	 32.32	0	2089063..2089554	-	163	161510168	sak	USA300HOU_1949	-	staphylokinase
1903	 26.14	-1	2089457..2089609	+	50	161510169	-	USA300HOU_1950	-	hypothetical protein
1904	 35.19	0	2089745..2090500	-	251	161510170	ami	USA300HOU_1951	-	N-acetylmuramoyl-L-alanine amidase
1905	 32.55	0	2090512..2090766	-	84	161510171	-	USA300HOU_1952	-	holin
1906	 31.11	0	2090978..2091112	-	44	161510172	-	USA300HOU_1953	-	hypothetical protein
1907	 32.66	0	2091304..2091600	-	98	161510173	-	USA300HOU_1954	-	hypothetical protein
1908	 30.90	0	2091658..2091945	-	95	161510174	-	USA300HOU_1955	-	hypothetical protein
1909	 30.72	0	2091992..2092144	-	50	161510175	-	USA300HOU_1956	-	hypothetical protein
1910	 35.29	0	2092134..2095919	-	1261	161510176	-	USA300HOU_1957	-	hypothetical protein
1911	 34.55	0	2095935..2097419	-	494	161510177	-	USA300HOU_1958	-	hypothetical protein
1912	 35.78	0	2097416..2101945	-	1509	161510178	-	USA300HOU_1959	-	bacteriophage tail length tape measure protein
1913	 28.15	-1	2102002..2102136	-	44	161510179	-	USA300HOU_1960	-	hypothetical protein
1914	 33.33	0	2102190..2102540	-	116	161510180	-	USA300HOU_1961	-	hypothetical protein
1915	 36.90	+1	2102856..2103500	-	214	161510181	-	USA300HOU_1962	-	hypothetical protein
1916	 32.10	0	2103504..2103908	-	134	161510182	-	USA300HOU_1963	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.