IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
138	 35.71	0	155980..156735	-	251	161508404	-	USA300HOU_0147	-	transcriptional regulator
139	 37.57	+1	156971..157678	+	235	161508405	deoD1	USA300HOU_0148	-	purine nucleoside phosphorylase
140	 32.00	0	157685..159037	+	450	161508406	-	USA300HOU_0149	-	major facilitator superfamily tetracycline:cation symporter
141	 39.82	+1	159118..159780	+	220	161508407	deoC1	USA300HOU_0150	-	deoxyribose-phosphate aldolase
142	 36.81	+1	159808..160986	+	392	161508408	deoB1	USA300HOU_0151	-	phosphopentomutase
143	 37.01	+1	161117..161932	-	271	161508409	-	USA300HOU_0152	-	ABC transporter ATP-binding protein
144	 34.71	0	161929..162654	-	241	161508410	-	USA300HOU_0153	-	ABC transporter ATP-binding protein
145	 34.88	0	162731..163504	-	257	161508411	-	USA300HOU_0154	-	ABC transporter ATP-binding protein
146	 31.03	0	163718..164674	-	318	161508412	-	USA300HOU_0155	-	ABC transporter ATP-binding protein
147	 36.83	+1	164903..166447	+	514	161508413	-	USA300HOU_0156	-	hypothetical protein
148	 36.33	0	166498..168033	+	511	161508414	-	USA300HOU_0157	-	nucleotidase
149	 22.32	-2	169537..169863	+	108	161508415	-	USA300HOU_0160	-	hypothetical protein
150	 36.13	0	171101..173710	+	869	161508416	-	USA300HOU_0162	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
151	 29.90	0	174055..174723	+	222	161508417	cap5A	USA300HOU_0163	-	capsular polysaccharide biosynthesis protein Cap5A
152	 33.62	0	174739..175425	+	228	161508418	cap5B	USA300HOU_0164	-	capsular polysaccharide biosynthesis protein Cap5B
153	 31.76	0	175428..176192	+	254	161508419	cap5C	USA300HOU_0165	-	capsular polysaccharide biosynthesis protein Cap5C
154	 33.92	0	178026..179054	+	342	161508420	cap5E	USA300HOU_0167	-	capsular polysaccharide biosynthesis protein Cap5E
155	 34.86	0	179061..180176	+	371	161508421	cap5F	USA300HOU_0168	-	capsular polysaccharide biosynthesis protein Cap5F
156	 32.54	0	181307..181933	+	208	161508422	cap5H	USA300HOU_0170	-	capsular polysaccharide biosynthesis protein Cap5H
157	 29.19	0	181938..183047	+	369	161508423	cap5I	USA300HOU_0171	-	capsular polysaccharide biosynthesis protein Cap5I
158	 29.31	0	183061..184227	+	388	161508424	cap5J	USA300HOU_0172	-	capsular polysaccharide biosynthesis protein Cap5J
159	 26.78	-1	184220..185425	+	401	161508425	cap5K	USA300HOU_0173	-	capsular polysaccharide synthesis protein Cap5K
160	 35.07	0	185426..186631	+	401	161508426	cap5L	USA300HOU_0174	-	capsular polysaccharide biosynthesis protein Cap5L
161	 32.62	0	186642..187199	+	185	161508427	cap5M	USA300HOU_0175	-	capsular polysaccharide biosynthesis protein Cap5M
162	 33.56	0	187199..188086	+	295	161508428	cap5N	USA300HOU_0176	-	capsular polysaccharide biosynthesis protein Cap5N
163	 34.36	0	188140..189402	+	420	161508429	cap5O	USA300HOU_0177	-	capsular polysaccharide biosynthesis protein Cap5O
164	 36.14	0	189449..190624	+	391	161508430	cap5P	USA300HOU_0178	-	capsular polysaccharide biosynthesis protein Cap5P
165	 30.53	0	190689..191009	-	106	161508431	isdG1	USA300HOU_0179	-	heme-degrading monooxygenase IsdI
166	 32.03	0	191022..191405	-	127	161508432	-	USA300HOU_0180	-	hypothetical protein
167	 36.29	0	191832..193319	+	495	161508433	aldH2	USA300HOU_0181	-	aldehyde dehydrogenase (NAD(+))
168	 31.98	0	193965..194924	+	319	161508434	-	USA300HOU_0182	-	CDF family cation diffusion facilitator
169	 31.37	0	194986..195189	-	67	161508435	-	USA300HOU_0183	-	hypothetical protein
170	 34.11	0	195368..195880	+	170	161508436	-	USA300HOU_0184	-	hypothetical protein
171	 35.36	0	196222..196962	+	246	161508437	-	USA300HOU_0185	-	nitrite/nitrate ABC transporter ATP-binding protein
172	 36.82	+1	196976..197950	+	324	161508438	-	USA300HOU_0186	-	ABC transporter ATP-binding protein
173	 35.30	0	197947..198708	+	253	161508439	-	USA300HOU_0187	-	ABC transporter ATP-binding protein
174	 32.50	0	199970..200329	+	119	161508440	-	USA300HOU_0189	-	hypothetical protein
175	 34.98	0	200496..201527	+	343	161508441	fdh	USA300HOU_0190	-	formate dehydrogenase
176	 32.37	0	201913..203163	+	416	161508442	-	USA300HOU_0191	-	major facilitator superfamily multidrug cation symporter or antiporter
177	 35.20	0	203592..210785	+	2397	161508443	-	USA300HOU_0192	-	non-ribosomal peptide synthetase
178	 33.64	0	210798..211442	+	214	161508444	-	USA300HOU_0193	-	holo-[acyl-carrier-protein] synthase
179	 36.57	+1	211770..212264	-	164	161508445	-	USA300HOU_0194	-	hypothetical protein
180	 34.64	0	212519..213283	-	254	161508446	argB	USA300HOU_0195	-	acetylglutamate kinase
181	 38.00	+1	213299..214540	-	413	161508447	argJ	USA300HOU_0196	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
182	 35.46	0	214552..215586	-	344	161508448	argC	USA300HOU_0197	-	N-acetyl-gamma-glutamyl-phosphate reductase
183	 37.79	+1	215622..216833	-	403	161508449	argD	USA300HOU_0198	-	ornithine aminotransferase
184	 33.04	0	217059..218414	-	451	161508450	-	USA300HOU_0199	-	LIVCS family branched chain amino acid:cation symporter
185	 35.13	0	218690..219247	-	185	161508451	-	USA300HOU_0200	-	isochorismatase
186	 36.50	+1	219314..220954	-	546	161508452	-	USA300HOU_0201	-	indolepyruvate decarboxylase
187	 34.31	0	221148..221249	+	33	161508453	-	USA300HOU_0202	-	hypothetical protein
188	 37.89	+1	221228..223288	-	686	161508454	-	USA300HOU_0203	-	PTS family glucose/glucoside (glc) porter component IIABC
189	 35.32	0	223859..224914	+	351	161508455	-	USA300HOU_0204	-	hypothetical protein
190	 38.13	+1	224914..225810	+	298	161508456	-	USA300HOU_0205	-	N-acetylmuramic acid-6-phosphate etherase
191	 38.08	+1	225822..227276	+	484	161508457	-	USA300HOU_0206	-	PTS family sucrose porter component IIBC
192	 34.36	0	227276..228154	+	292	161508458	-	USA300HOU_0207	-	transcriptional regulator
193	 33.23	0	228842..231631	+	929	161508459	hsdR2	USA300HOU_0208	-	type I site-specific deoxyribonuclease restriction subunit
194	 28.23	-1	231836..232678	+	280	161508460	-	USA300HOU_0209	-	hypothetical protein
195	 29.76	0	232680..233603	+	307	161508461	-	USA300HOU_0210	-	hypothetical protein
196	 27.40	-1	233590..234702	+	370	161508462	-	USA300HOU_0211	-	hypothetical protein
197	 35.66	0	234967..236559	-	530	161508463	-	USA300HOU_0212	-	oligopeptide ABC transporter ATP-binding protein
198	 32.85	0	236558..237994	+	478	161508464	-	USA300HOU_0213	-	oligopeptide ABC transporter membrane protein
199	 34.62	0	238000..239163	+	387	161508465	-	USA300HOU_0214	-	oligopeptide ABC transporter membrane protein
200	 33.33	0	239180..240955	+	591	161508466	rlp	USA300HOU_0215	-	RGD domain-containing lipoprotein
201	 37.57	+1	240993..242999	+	668	161508467	ggt	USA300HOU_0216	-	T3 family gamma-glutamyltransferase
202	 29.46	0	243297..244070	-	257	161508468	-	USA300HOU_0217	-	lipoprotein
203	 32.22	0	244260..244886	-	208	161508469	-	USA300HOU_0218	-	azoreductase
204	 36.38	+1	245083..245673	+	196	161508470	-	USA300HOU_0219	-	M23 family peptidase
205	 35.06	0	246056..247153	+	365	161508471	-	USA300HOU_0220	-	maltose/maltodextrin ABC transporter ATP-binding protein
206	 33.96	0	247166..248437	+	423	161508472	-	USA300HOU_0221	-	ABC transporter substrate-binding protein
207	 35.54	0	248440..249708	+	422	161508473	-	USA300HOU_0222	-	maltose/maltodextrin ABC transporter membrane protein
208	 33.93	0	249710..250549	+	279	161508474	-	USA300HOU_0223	-	maltose/maltodextrin ABC transporter membrane protein
209	 38.89	+1	250620..251699	+	359	161508475	-	USA300HOU_0224	-	dehydrogenase
210	 39.39	+1	251724..252764	+	346	161508476	-	USA300HOU_0225	-	dehydrogenase
211	 35.91	0	252819..253787	+	322	161508477	-	USA300HOU_0226	-	hypothetical protein
212	 30.39	0	253975..254076	+	33	161508478	-	USA300HOU_0227	-	hypothetical protein
213	 27.05	-1	254149..254721	-	190	161508479	-	USA300HOU_0228	-	hypothetical protein
214	 36.34	0	254858..256255	+	465	161508480	-	USA300HOU_0229	-	sugar phosphate antiporter
215	 32.67	0	256614..257372	-	252	161508481	-	USA300HOU_0230	-	response regulator
216	 32.76	0	257365..258921	-	518	161508482	-	USA300HOU_0231	-	sensor histidine kinase
217	 34.16	0	258918..259886	-	322	161508483	-	USA300HOU_0232	-	iron (Fe3+) ABC transporter membrane/binding protein
218	 36.73	+1	260459..262723	+	754	161508484	pfl	USA300HOU_0233	-	formate acetyltransferase
219	 36.11	0	262746..263501	+	251	161508485	pflA	USA300HOU_0234	-	[formate-C-acetyltransferase]-activating enzyme
220	 31.79	0	263605..263799	+	64	161508486	-	USA300HOU_0235	-	hypothetical protein
221	 30.85	0	263786..265600	+	604	161508487	glpQ1	USA300HOU_0236	-	hypothetical protein
222	 31.88	0	265764..266108	-	114	161508488	-	USA300HOU_0237	-	hypothetical protein
223	 34.10	0	266298..268127	+	609	161508489	-	USA300HOU_0238	-	staphylocoagulase precursor
224	 37.04	+1	268309..268416	-	35	161508490	-	USA300HOU_0239	-	hypothetical protein
225	 43.22	+2	268730..269923	-	397	161508491	-	USA300HOU_0240	-	acetyl-CoA C-acetyltransferase
226	 37.36	+1	269944..272205	-	753	161508492	-	USA300HOU_0241	-	3-hydroxyacyl-CoA dehydrogenase
227	 38.74	+1	272391..273647	-	418	161508493	-	USA300HOU_0242	-	acyl-CoA dehydrogenase
228	 37.32	+1	273714..275219	-	501	161508494	-	USA300HOU_0243	-	long-chain-fatty-acid--CoA ligase
229	 36.82	+1	275245..276822	-	525	161508495	-	USA300HOU_0244	-	3-oxoacid CoA-transferase
230	 34.23	0	277176..278405	+	409	161508496	-	USA300HOU_0245	-	hypothetical protein
231	 31.03	0	278719..280194	-	491	161508497	-	USA300HOU_0246	-	ABC transporter ATP-binding protein
232	 35.29	0	280392..280748	-	118	161508498	-	USA300HOU_0247	-	hypothetical protein
233	 25.86	-1	280905..281078	-	57	161508499	-	USA300HOU_0248	-	hypothetical protein
234	 34.82	0	281104..282249	-	381	161508500	hmp	USA300HOU_0249	-	nitric oxide dioxygenase
235	 29.63	0	282404..282511	+	35	161508501	-	USA300HOU_0250	-	hypothetical protein
236	 37.32	+1	282822..283775	+	317	161508502	ldh	USA300HOU_0251	-	L-lactate dehydrogenase
237	 39.28	+1	284095..285624	-	509	161508503	-	USA300HOU_0252	-	PTS family glucose/glucoside (glc) porter component IIABC
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.