IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1774	 31.91	0	1956068..1957051	-	327	161510040	lukD	USA300HOU_1817	-	leukotoxin LukD
1775	 32.69	0	1957053..1957988	-	311	161510041	lukE	USA300HOU_1818	-	leukotoxin LukE
1776	 27.85	-1	1958871..1959326	+	151	161510042	-	USA300HOU_1819	-	hypothetical protein
1777	 25.86	-1	1959339..1959980	+	213	161510043	-	USA300HOU_1820	-	hypothetical protein
1778	 38.64	+1	1961275..1961406	+	43	161510044	-	USA300HOU_1821	-	hypothetical protein
1779	 34.05	0	1962583..1963137	-	184	161510045	-	USA300HOU_1822	-	hypothetical protein
1780	 34.98	0	1963460..1964860	-	466	161510046	hemG	USA300HOU_1823	-	protoporphyrinogen oxidase
1781	 33.55	0	1964884..1965807	-	307	161510047	hemH	USA300HOU_1824	-	ferrochelatase
1782	 34.87	0	1965865..1966902	-	345	161510048	hemE	USA300HOU_1825	-	uroporphyrinogen decarboxylase
1783	 26.13	-1	1966892..1967002	-	36	161510049	-	USA300HOU_1826	-	hypothetical protein
1784	 31.75	0	1967165..1967668	+	167	161510050	-	USA300HOU_1827	-	RNAIII-activating protein TRAP
1785	 29.66	0	1967792..1969015	-	407	161510051	-	USA300HOU_1828	-	ABC transporter ATP-binding protein
1786	 35.09	0	1969008..1969748	-	246	161510052	-	USA300HOU_1829	-	ABC transporter ATP-binding protein
1787	 30.50	0	1969882..1970304	+	140	161510053	-	USA300HOU_1830	-	HIT histidine triad cell-cycle regulator
1788	 36.61	+1	1970446..1970811	+	121	161510054	-	USA300HOU_1831	-	hypothetical protein
1789	 24.19	-2	1971544..1972101	+	185	161510055	-	USA300HOU_1832	-	hypothetical protein
1790	 30.94	0	1972306..1973268	+	320	161510056	prsA2	USA300HOU_1833	-	peptidylprolyl isomerase
1791	 33.33	0	1973389..1974330	-	313	161510057	-	USA300HOU_1834	-	3'-5' exoribonuclease YhaM
1792	 30.71	0	1974327..1977263	-	978	161510058	-	USA300HOU_1835	-	hypothetical protein
1793	 29.91	0	1977253..1978449	-	398	161510059	sbcD	USA300HOU_1836	-	DNA repair exonuclease
1794	 31.31	0	1978740..1978838	-	32	161510060	-	USA300HOU_1837	-	hypothetical protein
1795	 32.17	0	1979221..1979565	-	114	161510061	-	USA300HOU_1838	-	hypothetical protein
1796	 29.78	0	1979634..1980758	-	374	161510062	-	USA300HOU_1839	-	hypothetical protein
1797	 21.33	-2	1980755..1980829	-	24	161510063	-	USA300HOU_1840	-	hypothetical protein
1798	 31.83	0	1980937..1981401	-	154	161510064	-	USA300HOU_1841	-	transcriptional regulator
1799	 31.57	0	1981757..1982380	-	207	161510065	-	USA300HOU_1842	-	response regulator
1800	 34.41	0	1982402..1983514	-	370	161510066	-	USA300HOU_1843	-	sensor histidine kinase
1801	 32.97	0	1983677..1984498	+	273	161510067	rluA2	USA300HOU_1844	-	pseudouridylate synthase
1802	 34.56	0	1984961..1986346	-	461	161510068	fumC	USA300HOU_1845	-	fumarate hydratase
1803	 28.03	-1	1986542..1986937	-	131	161510069	-	USA300HOU_1846	-	hypothetical protein
1804	 36.36	+1	1987056..1987418	+	120	161510070	-	USA300HOU_1847	-	hypothetical protein
1805	 28.10	-1	1987714..1987866	-	50	161510071	-	USA300HOU_1848	-	hypothetical protein
1806	 31.83	0	1987891..1988490	-	199	161510072	-	USA300HOU_1849	-	hypothetical protein
1807	 31.21	0	1988649..1989119	-	156	161510073	-	USA300HOU_1850	-	TrmH family RNA methyltransferase
1808	 37.27	+1	1989124..1990266	-	380	161510074	-	USA300HOU_1851	-	iron-sulfur (Fe-S) cluster-binding protein
1809	 33.06	0	1990402..1991130	-	242	161510075	glnQ	USA300HOU_1852	-	glutamate ABC transporter ATP-binding protein
1810	 31.55	0	1991117..1992574	-	485	161510076	-	USA300HOU_1853	-	amino acid ABC transporter ATP-binding protein
1811	 31.17	0	1992832..1993893	-	353	161510077	-	USA300HOU_1854	-	hypothetical protein
1812	 30.76	0	1994386..1995747	+	453	161510078	-	USA300HOU_1855	-	IS1181 transposase
1813	 30.43	0	2004161..2004607	-	148	161510079	-	USA300HOU_1856	-	Fur family transcriptional regulator
1814	 30.70	0	2004704..2005654	-	316	161510080	-	USA300HOU_1857	-	D-3-phosphoglycerate dehydrogenase
1815	 29.17	0	2005660..2006115	-	151	161510081	bcp	USA300HOU_1858	-	peroxiredoxin
1816	 36.67	+1	2006196..2007485	+	429	161510082	hemL2	USA300HOU_1859	-	glutamate-1-semialdehyde aminotransferase
1817	 30.89	0	2007727..2008872	+	381	161510083	-	USA300HOU_1860	-	hypothetical protein
1818	 32.87	0	2009063..2010799	-	578	161510084	-	USA300HOU_1861	-	ABC transporter ATP-binding protein
1819	 32.78	0	2011090..2011632	-	180	161510085	-	USA300HOU_1862	-	hypothetical protein
1820	 34.01	0	2011934..2012971	-	345	161510086	mutY	USA300HOU_1863	-	A/G-specific DNA glycosylase
1821	 35.17	0	2013123..2014100	+	325	161510087	-	USA300HOU_1864	-	hypothetical protein
1822	 28.67	-1	2014361..2015197	-	278	161510088	-	USA300HOU_1865	-	teichoic acid ABC transporter ATP-binding/membrane protein
1823	 30.17	0	2015206..2016723	-	505	161510089	-	USA300HOU_1866	-	teichoic acid ABC transporter ATP-binding protein
1824	 30.48	0	2016738..2017052	-	104	161510090	-	USA300HOU_1867	-	hypothetical protein
1825	 28.45	-1	2017030..2017848	-	272	161510091	-	USA300HOU_1868	-	recombination regulator RecX
1826	 30.74	0	2018109..2018918	-	269	161510092	-	USA300HOU_1869	-	glycosyltransferase
1827	 34.88	0	2019259..2019774	-	171	161510093	-	USA300HOU_1870	-	C56 family endopeptidase PfpI
1828	 30.86	0	2019905..2020066	-	53	161510094	-	USA300HOU_1871	-	hypothetical protein
1829	 33.68	0	2020290..2021441	+	383	161510095	-	USA300HOU_1872	-	hypothetical protein
1830	 35.97	0	2021701..2022231	-	176	161510096	-	USA300HOU_1873	-	hypothetical protein
1831	 33.73	0	2022321..2023577	-	418	161510097	pepS	USA300HOU_1874	-	M29 family aminopeptidase
1832	 31.94	0	2023580..2023795	-	71	161510098	-	USA300HOU_1875	-	hypothetical protein
1833	 34.96	0	2023869..2023991	-	40	161510099	-	USA300HOU_1876	-	hypothetical protein
1834	 33.33	0	2023975..2024391	+	138	161510100	-	USA300HOU_1877	-	protein-tyrosine-phosphatase
1835	 32.97	0	2024398..2024673	+	91	161510101	-	USA300HOU_1878	-	hypothetical protein
1836	 32.35	0	2024951..2026168	+	405	161510102	-	USA300HOU_1879	-	ribonuclease BN
1837	 33.81	0	2026284..2026913	-	209	161510103	vraR	USA300HOU_1880	-	response regulator VraR
1838	 31.70	0	2026903..2027946	-	347	161510104	vraS	USA300HOU_1881	-	sensor histidine kinase VraS
1839	 30.20	0	2027943..2028644	-	233	161510105	-	USA300HOU_1882	-	hypothetical protein
1840	 26.10	-1	2028659..2029045	-	128	161510106	-	USA300HOU_1883	-	hypothetical protein
1841	 35.84	0	2029262..2030020	-	252	161510107	map	USA300HOU_1884	-	methionine aminopeptidase
1842	 32.12	0	2030548..2031534	+	328	161510108	-	USA300HOU_1885	-	hypothetical protein
1843	 42.61	+2	2031545..2031835	-	96	161510109	-	USA300HOU_1886	-	hypothetical protein
1844	 26.93	-1	2032024..2032476	-	150	161510110	-	USA300HOU_1887	-	hypothetical protein
1845	 27.93	-1	2032466..2032576	-	36	161510111	-	USA300HOU_1888	-	hypothetical protein
1846	 30.87	0	2032662..2033393	-	243	161510112	-	USA300HOU_1889	-	adenosylcobyric acid synthase (glutamine-hydrolyzing)
1847	 34.25	0	2033395..2034708	-	437	161510113	murE2	USA300HOU_1890	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
1848	 34.53	0	2035000..2035500	+	166	161510114	-	USA300HOU_1891	-	ferritin
1849	 27.96	-1	2035582..2035674	-	30	161510115	-	USA300HOU_1892	-	hypothetical protein
1850	 31.71	0	2035889..2036443	+	184	161510116	-	USA300HOU_1893	-	DNA-directed DNA polymerase III
1851	 34.58	0	2036511..2037551	-	346	161510117	-	USA300HOU_1894	-	DNA-directed DNA polymerase IV
1852	 29.00	0	2037828..2038358	-	176	161510118	-	USA300HOU_1895	-	hypothetical protein
1853	 33.11	0	2038528..2039889	-	453	161510119	-	USA300HOU_1896	-	TrmA family RNA methyltransferase
1854	 33.76	0	2039970..2040917	-	315	161510120	-	USA300HOU_1897	-	putative lipid kinase
1855	 23.81	-2	2041500..2041646	-	48	161510121	-	USA300HOU_1899	-	hypothetical protein
1856	 34.73	0	2041686..2043113	-	475	161510122	gatB2	USA300HOU_1900	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1857	 34.09	0	2043126..2044583	-	485	161510123	gatA2	USA300HOU_1901	-	glutamyl-tRNA(Gln) amidotransferase subunit A
1858	 35.64	0	2044585..2044887	-	100	161510124	gatC2	USA300HOU_1902	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1859	 35.87	0	2045254..2046792	+	512	161510125	putP	USA300HOU_1903	-	SSS family major sodium/proline symporter
1860	 30.68	0	2046881..2048086	-	401	161510126	camS	USA300HOU_1904	-	pheromone lipoprotein CamS
1861	 34.08	0	2048093..2050096	-	667	161510127	-	USA300HOU_1905	-	DNA ligase (NAD(+))
1862	 34.15	0	2050100..2052292	-	730	161510128	pcrA	USA300HOU_1906	-	ATP-dependent DNA helicase PcrA
1863	 33.48	0	2052289..2052981	-	230	161510129	pcrB	USA300HOU_1907	-	geranylgeranylglyceryl phosphate synthase-like protein
1864	 32.34	0	2053153..2053455	-	100	161510130	-	USA300HOU_1908	-	hypothetical protein
1865	 35.65	0	2053564..2054859	-	431	161510131	purB	USA300HOU_1909	-	adenylosuccinate lyase
1866	 31.28	0	2055720..2056886	+	388	161510132	-	USA300HOU_1910	-	C47 family staphopain protease
1867	 25.99	-1	2056917..2057243	+	108	161510133	-	USA300HOU_1911	-	hypothetical protein
1868	 33.91	0	2057535..2057708	-	57	161510134	-	USA300HOU_1912	-	hypothetical protein
1869	 32.17	0	2057689..2058291	-	200	161510135	-	USA300HOU_1913	-	hypothetical protein
1870	 34.31	0	2058562..2059383	-	273	161510136	nadE	USA300HOU_1914	-	NAD synthetase
1871	 33.40	0	2059376..2060845	-	489	161510137	-	USA300HOU_1915	-	nicotinate phosphoribosyltransferase
1872	 33.52	0	2061029..2062105	+	358	161510138	-	USA300HOU_1916	-	nitric-oxide synthase, oxygenase subunit
1873	 32.83	0	2062125..2062919	+	264	161510139	pheA	USA300HOU_1917	-	prephenate dehydratase
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.