IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1679	 30.24	0	1843698..1844603	+	301	161509945	sgtA	USA300HOU_1718	-	transglycosylase
1680	 25.81	-1	1844583..1844675	-	30	161509946	-	USA300HOU_1719	-	hypothetical protein
1681	 33.56	0	1844806..1847493	-	895	161509947	-	USA300HOU_1720	-	cell wall surface anchored protein
1682	 36.27	0	1847789..1849489	-	566	161509948	fhs	USA300HOU_1721	-	formate--tetrahydrofolate ligase
1683	 36.56	+1	1849896..1851602	-	568	161509949	acsA1	USA300HOU_1722	-	acetyl-CoA synthetase
1684	 34.44	0	1851771..1852403	+	210	161509950	acuA	USA300HOU_1723	-	acetoin utilization protein AcuA
1685	 34.62	0	1852428..1853597	+	389	161509951	acuC	USA300HOU_1724	-	acetoin utilization protein AcuC
1686	 33.13	0	1853695..1854684	-	329	161509952	ccpA	USA300HOU_1725	-	catabolite control protein A
1687	 20.18	-2	1854757..1854870	-	37	161509953	-	USA300HOU_1726	-	hypothetical protein
1688	 33.70	0	1855224..1856315	-	363	161509954	-	USA300HOU_1727	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
1689	 33.26	0	1857015..1858373	-	452	161509955	-	USA300HOU_1728	-	hypothetical protein
1690	 33.54	0	1858447..1858938	-	163	161509956	-	USA300HOU_1729	-	hypothetical protein
1691	 31.28	0	1859012..1860325	-	437	161509957	murC	USA300HOU_1730	-	UDP-N-acetylmuramate--L-alanine ligase
1692	 33.57	0	1860349..1864173	-	1274	161509958	-	USA300HOU_1731	-	DNA translocase
1693	 31.32	0	1864194..1864790	-	198	161509959	pheT2	USA300HOU_1732	-	phenylalanine--tRNA ligase beta subunit
1694	 30.96	0	1864819..1865661	-	280	161509960	-	USA300HOU_1733	-	hypothetical protein
1695	 33.01	0	1865776..1866087	-	103	161509961	-	USA300HOU_1734	-	thioredoxin
1696	 34.08	0	1866152..1867228	-	358	161509962	pepA1	USA300HOU_1735	-	M42 family glutamyl aminopeptidase
1697	 28.21	-1	1867315..1867626	+	103	161509963	-	USA300HOU_1736	-	hypothetical protein
1698	 33.93	0	1867751..1868593	-	280	161509964	-	USA300HOU_1737	-	metal-dependent hydrolase
1699	 32.09	0	1869063..1869707	-	214	161509965	trmB	USA300HOU_1738	-	tRNA (guanine-N(7)-)-methyltransferase
1700	 34.83	0	1869722..1870522	-	266	161509966	-	USA300HOU_1739	-	hypothetical protein
1701	 21.88	-2	1870857..1870952	+	31	161509967	-	USA300HOU_1740	-	hypothetical protein
1702	 32.86	0	1871063..1871911	-	282	161509968	daaA	USA300HOU_1741	-	D-alanine aminotransferase
1703	 34.61	0	1871915..1873324	-	469	161509969	-	USA300HOU_1742	-	dipeptidase PepV
1704	 29.79	0	1874074..1874496	-	140	161509970	-	USA300HOU_1743	-	hypothetical protein
1705	 29.74	0	1874513..1875208	-	231	161509971	rsuA	USA300HOU_1744	-	pseudouridylate synthase
1706	 32.13	0	1875205..1876866	-	553	161509972	-	USA300HOU_1745	-	polysaccharide biosynthesis protein
1707	 35.54	0	1877273..1878541	+	422	161509973	-	USA300HOU_1746	-	flavoprotein
1708	 35.15	0	1878658..1885218	-	2186	161509974	fmtB1	USA300HOU_1747	-	cell surface anchored protein
1709	 32.69	0	1885544..1885855	-	103	161509975	-	USA300HOU_1748	-	sulfurtransferase
1710	 34.37	0	1885877..1888294	-	805	161509976	leuS	USA300HOU_1749	-	leucyl-tRNA synthetase
1711	 34.94	0	1888582..1889763	-	393	161509977	-	USA300HOU_1750	-	major facilitator transporter
1712	 36.90	+1	1889873..1890826	+	317	161509978	-	USA300HOU_1751	-	hypothetical protein
1713	 32.62	0	1890823..1891386	+	187	161509979	-	USA300HOU_1752	-	hypothetical protein
1714	 31.34	0	1891506..1892006	-	166	161509980	rot	USA300HOU_1753	-	repressor of toxins Rot
1715	 32.49	0	1893486..1894313	-	275	161509981	-	USA300HOU_1755	-	lysophospholipase
1716	 33.03	0	1894547..1895548	+	333	161509982	putA	USA300HOU_1756	-	proline dehydrogenase
1717	 33.76	0	1895670..1896134	-	154	161509983	ribH	USA300HOU_1757	-	riboflavin synthase beta subunit
1718	 34.09	0	1896147..1897328	-	393	161509984	ribA	USA300HOU_1758	-	riboflavin biosynthesis protein
1719	 32.70	0	1897339..1897971	-	210	161509985	ribB	USA300HOU_1759	-	riboflavin synthase subunit alpha
1720	 34.77	0	1897978..1899021	-	347	161509986	ribD	USA300HOU_1760	-	diaminohydroxyphosphoribosylaminopyrimidine deaminase
1721	 31.60	0	1899502..1901004	-	500	161509987	-	USA300HOU_1761	-	hypothetical protein
1722	 20.00	-2	1901027..1901146	-	39	161509988	-	USA300HOU_1762	-	hypothetical protein
1723	 32.02	0	1901841..1903133	+	430	161509989	arsB	USA300HOU_1763	-	ArsB arsenite-antimonite efflux family transporter membrane protein
1724	 33.59	0	1903151..1903546	+	131	161509990	arsC2	USA300HOU_1764	-	arsenate reductase
1725	 31.11	0	1903841..1904695	-	284	161509991	-	USA300HOU_1765	-	mannosyl-glycoprotein endo-beta-N-glucosaminidase
1726	 27.50	-1	1905316..1905864	+	182	161509992	rpoE1	USA300HOU_1766	-	DNA-directed RNA polymerase sigma subunit RpoE
1727	 29.73	0	1905977..1906420	+	147	161509993	-	USA300HOU_1767	-	hypothetical protein
1728	 27.03	-1	1906407..1906850	-	147	161509994	-	USA300HOU_1768	-	hypothetical protein
1729	 28.62	-1	1907146..1907781	+	211	161509995	-	USA300HOU_1769	-	hypothetical protein
1730	 34.17	0	1908221..1908934	-	237	161509996	-	USA300HOU_1770	-	putative translaldolase
1731	 25.41	-1	1909194..1909496	+	100	161509997	-	USA300HOU_1771	-	hypothetical protein
1732	 34.01	0	1909674..1910117	+	147	161509998	crcB	USA300HOU_1772	-	camphor resistance protein CrcB
1733	 31.36	0	1910114..1910467	+	117	161509999	-	USA300HOU_1773	-	camphor resistance protein
1734	 34.53	0	1912550..1913383	-	277	161510000	-	USA300HOU_1775	-	aldo/keto reductase
1735	 30.14	0	1913595..1914503	-	302	161510001	-	USA300HOU_1776	-	hypothetical protein
1736	 37.69	+1	1914628..1915821	-	397	161510002	metK	USA300HOU_1777	-	S-adenosylmethionine synthetase
1737	 35.09	0	1916192..1917784	+	530	161510003	pckA	USA300HOU_1778	-	phosphoenolpyruvate carboxykinase
1738	 28.86	-1	1917920..1918321	-	133	161510004	-	USA300HOU_1779	-	transposase
1739	 38.91	+1	1918780..1919550	-	256	161510005	-	USA300HOU_1780	-	hypothetical protein
1740	 35.00	0	1919531..1920010	-	159	161510006	-	USA300HOU_1781	-	hypothetical protein
1741	 37.98	+1	1920070..1920327	+	85	161510007	-	USA300HOU_1782	-	hypothetical protein
1742	 37.03	+1	1920324..1921325	-	333	161510008	-	USA300HOU_1783	-	o-succinylbenzoic acid (OSB) synthetase
1743	 35.97	0	1921330..1922808	-	492	161510009	-	USA300HOU_1784	-	o-succinylbenzoic acid--CoA ligase
1744	 29.19	0	1922967..1923449	-	160	161510010	-	USA300HOU_1785	-	hypothetical protein
1745	 32.26	0	1923725..1924375	+	216	161510011	-	USA300HOU_1786	-	hypothetical protein
1746	 36.14	0	1924456..1925451	+	331	161510012	-	USA300HOU_1787	-	hypothetical protein
1747	 32.17	0	1926194..1926538	+	114	161510013	-	USA300HOU_1789	-	hypothetical protein
1748	 32.07	0	1926636..1927187	+	183	161510014	-	USA300HOU_1790	-	hypothetical protein
1749	 27.41	-1	1927405..1928046	-	213	161510015	-	USA300HOU_1791	-	hypothetical protein
1750	 31.18	0	1928160..1928345	-	61	161510016	-	USA300HOU_1792	-	hypothetical protein
1751	 21.47	-2	1928347..1928523	-	58	161510017	-	USA300HOU_1793	-	hypothetical protein
1752	 34.11	0	1928534..1928917	-	127	161510018	-	USA300HOU_1794	-	hypothetical protein
1753	 33.33	0	1930085..1930186	+	33	161510019	-	USA300HOU_1796	-	hypothetical protein
1754	 24.47	-2	1930534..1931007	-	157	161510020	-	USA300HOU_1797	-	hypothetical protein
1755	 24.53	-2	1931432..1935247	-	1271	161510021	-	USA300HOU_1798	-	hypothetical protein
1756	 30.08	0	1936393..1937592	-	399	161510022	hsdS2	USA300HOU_1799	-	type I site-specific deoxyribonuclease specificity subunit
1757	 38.34	+1	1937585..1939141	-	518	161510023	hsdM2	USA300HOU_1800	-	type I site-specific deoxyribonuclease methyltransferase subunit
1758	 33.06	0	1939504..1940223	-	239	161510024	splF	USA300HOU_1801	-	serine protease SplF
1759	 34.59	0	1940374..1941090	-	238	161510025	splE	USA300HOU_1802	-	serine protease SplE
1760	 34.03	0	1941248..1941967	-	239	161510026	splD	USA300HOU_1803	-	serine protease SplD
1761	 32.92	0	1942088..1942807	-	239	161510027	splC	USA300HOU_1804	-	serine protease SplC
1762	 33.33	0	1942865..1943587	-	240	161510028	splB	USA300HOU_1805	-	serine protease SplB
1763	 32.20	0	1943712..1944419	-	235	161510029	splA	USA300HOU_1806	-	serine protease SplA
1764	 31.75	0	1945383..1945949	+	188	161510030	-	USA300HOU_1807	-	hypothetical protein
1765	 27.04	-1	1946423..1947121	-	232	161510031	epiG	USA300HOU_1808	-	lantibiotic epidermin immunity protein F
1766	 28.61	-1	1947118..1947879	-	253	161510032	epiE	USA300HOU_1809	-	epidermin ABC transporter membrane protein
1767	 29.73	0	1947876..1948568	-	230	161510033	epiF	USA300HOU_1810	-	epidermin ABC transporter ATP-binding protein
1768	 33.33	0	1948591..1949964	-	457	161510034	epiP	USA300HOU_1811	-	lantibiotic epidermin serine protease
1769	 26.78	-1	1949974..1950492	-	172	161510035	epiD	USA300HOU_1812	-	lantibiotic epidermin biosynthesis protein EpiD
1770	 28.76	-1	1950508..1951752	-	414	161510036	epiC	USA300HOU_1813	-	lantibiotic epidermin biosynthesis protein EpiC
1771	 27.59	-1	1951745..1954738	-	997	161510037	epiB	USA300HOU_1814	-	lantibiotic epidermin biosynthesis protein EpiB
1772	 35.42	0	1954803..1954946	-	47	161510038	epiA	USA300HOU_1815	-	lantibiotic epidermin EpiA
1773	 14.81	-2	1955021..1955155	-	44	161510039	-	USA300HOU_1816	-	hypothetical protein
1774	 31.91	0	1956068..1957051	-	327	161510040	lukD	USA300HOU_1817	-	leukotoxin LukD
1775	 32.69	0	1957053..1957988	-	311	161510041	lukE	USA300HOU_1818	-	leukotoxin LukE
1776	 27.85	-1	1958871..1959326	+	151	161510042	-	USA300HOU_1819	-	hypothetical protein
1777	 25.86	-1	1959339..1959980	+	213	161510043	-	USA300HOU_1820	-	hypothetical protein
1778	 38.64	+1	1961275..1961406	+	43	161510044	-	USA300HOU_1821	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.