IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1597	 32.63	0	1747169..1749448	-	759	161509863	secDF	USA300HOU_1636	-	bifunctional preprotein translocase subunit SecD/SecF
1598	 31.80	0	1749723..1749983	-	86	161509864	yajC	USA300HOU_1637	-	type I general secretory pathway preprotein translocase subunit YajC
1599	 35.70	0	1750002..1751141	-	379	161509865	tgt	USA300HOU_1638	-	queuine tRNA-ribosyltransferase
1600	 33.33	0	1751164..1752189	-	341	161509866	queA	USA300HOU_1639	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1601	 37.21	+1	1752191..1753195	-	334	161509867	ruvB	USA300HOU_1640	-	Holliday junction DNA helicase B
1602	 33.17	0	1753227..1753829	-	200	161509868	ruvA	USA300HOU_1641	-	crossover junction endodeoxyribonuclease
1603	 29.17	0	1753843..1754298	-	151	161509869	-	USA300HOU_1642	-	hypothetical protein
1604	 36.66	+1	1754311..1755603	-	430	161509870	-	USA300HOU_1643	-	GTPase ObgE
1605	 38.25	+1	1755958..1756242	-	94	161509871	rpmA	USA300HOU_1644	-	50S ribosomal protein L27
1606	 34.27	0	1756254..1756574	-	106	161509872	-	USA300HOU_1645	-	hypothetical protein
1607	 33.66	0	1756580..1756888	-	102	161509873	rplU	USA300HOU_1646	-	50S ribosomal protein L21
1608	 28.81	-1	1757055..1757585	-	176	161509874	-	USA300HOU_1647	-	hypothetical protein
1609	 31.08	0	1757585..1758427	-	280	161509875	mreC	USA300HOU_1648	-	cell shape protein MreC
1610	 38.33	+1	1758627..1758746	-	39	161509876	-	USA300HOU_1649	-	hypothetical protein
1611	 28.48	-1	1758820..1759293	-	157	161509877	-	USA300HOU_1650	-	hypothetical protein
1612	 36.14	0	1759767..1760051	-	94	161509878	-	USA300HOU_1651	-	hypothetical protein
1613	 32.74	0	1760119..1760790	-	223	161509879	radC	USA300HOU_1652	-	DNA repair protein RadC
1614	 28.39	-1	1760802..1761509	-	235	161509880	-	USA300HOU_1653	-	A24 family peptidase
1615	 32.78	0	1761779..1763050	-	423	161509881	folC	USA300HOU_1654	-	tetrahydrofolate synthase
1616	 34.40	0	1763063..1765693	-	876	161509882	valS	USA300HOU_1655	-	valyl-tRNA synthetase
1617	 33.33	0	1766096..1766656	+	186	161509883	tag	USA300HOU_1656	-	3-methyladenine glycosidase
1618	 29.98	0	1766879..1767952	-	357	161509884	-	USA300HOU_1657	-	ammonia monooxygenase
1619	 40.20	+2	1767986..1768087	-	33	161509885	-	USA300HOU_1658	-	hypothetical protein
1620	 36.44	+1	1768148..1769434	-	428	161509886	hemL	USA300HOU_1659	-	glutamate-1-semialdehyde aminotransferase
1621	 35.49	0	1769482..1770456	-	324	161509887	hemB	USA300HOU_1660	-	delta-aminolevulinic acid dehydratase
1622	 30.49	0	1770459..1771127	-	222	161509888	hemD	USA300HOU_1661	-	uroporphyrinogen III synthase
1623	 34.52	0	1771149..1772075	-	308	161509889	hemC	USA300HOU_1662	-	porphobilinogen deaminase
1624	 27.94	-1	1772117..1772932	-	271	161509890	-	USA300HOU_1663	-	cytochrome c assembly protein
1625	 33.78	0	1772954..1774300	-	448	161509891	hemA	USA300HOU_1664	-	glutamyl-tRNA reductase
1626	 29.10	0	1774517..1775107	-	196	161509892	-	USA300HOU_1665	-	GTPase EngB
1627	 34.13	0	1775261..1776523	-	420	161509893	clpX	USA300HOU_1666	-	ATP-dependent protease ATP-binding subunit
1628	 33.95	0	1776674..1777975	-	433	161509894	-	USA300HOU_1667	-	trigger factor
1629	 34.81	0	1781224..1782717	-	497	161509895	lysP	USA300HOU_1668	-	APC family amino acid-polyamine-organocation transporter
1630	 35.14	0	1783143..1785080	-	645	161509896	thrS	USA300HOU_1669	-	threonyl-tRNA synthetase
1631	 26.83	-1	1785278..1785400	-	40	161509897	-	USA300HOU_1670	-	hypothetical protein
1632	 34.31	0	1785493..1786413	-	306	161509898	dnaI	USA300HOU_1671	-	primosomal protein DnaI
1633	 32.83	0	1786413..1787813	-	466	161509899	dnaB2	USA300HOU_1672	-	replicative DNA helicase
1634	 35.67	0	1787814..1788284	-	156	161509900	-	USA300HOU_1673	-	transcriptional regulator NrdR
1635	 32.85	0	1788494..1789519	-	341	161509901	gapB	USA300HOU_1674	-	glyceraldehyde 3-phosphate dehydrogenase 2
1636	 34.46	0	1789689..1790312	-	207	161509902	coaE	USA300HOU_1675	-	dephospho-CoA kinase
1637	 32.07	0	1790328..1791200	-	290	161509903	fpg	USA300HOU_1676	-	formamidopyrimidine-DNA glycosylase
1638	 32.23	0	1791216..1793846	-	876	161509904	polA	USA300HOU_1677	-	DNA polymerase I
1639	 28.68	-1	1794140..1795642	-	500	161509905	-	USA300HOU_1678	-	hypothetical protein
1640	 31.05	0	1796126..1797790	-	554	161509906	-	USA300HOU_1679	-	sensor histidine kinase
1641	 33.90	0	1797787..1798491	-	234	161509907	-	USA300HOU_1680	-	alkaline phosphatase synthesis transcriptional regulatory protein
1642	 34.99	0	1798881..1800149	-	422	161509908	icd	USA300HOU_1681	-	isocitrate dehydrogenase
1643	 36.45	+1	1800198..1801319	-	373	161509909	citZ	USA300HOU_1682	-	methylcitrate synthase
1644	 34.88	0	1801667..1803028	+	453	161509910	-	USA300HOU_1683	-	APC family amino acid-polyamine-organocation transporter
1645	 34.76	0	1805353..1807110	-	585	161509911	pykA	USA300HOU_1684	-	pyruvate kinase
1646	 37.05	+1	1807132..1808100	-	322	161509912	pfkA	USA300HOU_1685	-	6-phosphofructokinase
1647	 34.18	0	1808369..1809313	-	314	161509913	accA	USA300HOU_1686	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1648	 34.27	0	1809313..1810170	-	285	161509914	accD	USA300HOU_1687	-	acetyl-CoA carboxylase subunit beta
1649	 35.77	0	1810365..1811594	-	409	161509915	-	USA300HOU_1688	-	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))
1650	 31.58	0	1812044..1815241	-	1065	161509916	dnaE2	USA300HOU_1689	-	DNA-directed DNA polymerase III alpha subunit
1651	 35.24	0	1815262..1816203	-	313	161509917	-	USA300HOU_1690	-	hypothetical protein
1652	 33.56	0	1816464..1817762	-	432	161509918	-	USA300HOU_1691	-	hypothetical protein
1653	 33.33	0	1817967..1818380	+	137	161509919	-	USA300HOU_1692	-	universal stress protein
1654	 33.62	0	1818685..1819374	-	229	161509920	-	USA300HOU_1693	-	metal-dependent hydrolase
1655	 33.14	0	1819549..1820604	+	351	161509921	pepQ	USA300HOU_1694	-	M24 family Xaa-Pro dipeptidase
1656	 29.29	0	1820698..1820796	-	32	161509922	-	USA300HOU_1695	-	hypothetical protein
1657	 35.92	0	1820920..1822038	-	372	161509923	ald	USA300HOU_1696	-	alanine dehydrogenase
1658	 35.53	0	1822179..1822679	+	166	161509924	-	USA300HOU_1697	-	universal stress protein
1659	 35.08	0	1822925..1824127	-	400	161509925	ackA	USA300HOU_1698	-	acetate kinase
1660	 31.96	0	1824215..1825162	-	315	161509926	-	USA300HOU_1699	-	hypothetical protein
1661	 35.15	0	1825285..1825779	-	164	161509927	ahpC2	USA300HOU_1700	-	peroxiredoxin
1662	 32.56	0	1825877..1826647	-	256	161509928	-	USA300HOU_1701	-	hypothetical protein
1663	 33.42	0	1826691..1827914	-	407	161509929	thiI	USA300HOU_1702	-	thiamine biosynthesis protein
1664	 31.58	0	1827914..1829053	-	379	161509930	csd2	USA300HOU_1703	-	cysteine desulfurase
1665	 25.53	-1	1829211..1829351	+	46	161509931	-	USA300HOU_1704	-	hypothetical protein
1666	 31.15	0	1829425..1831119	-	564	161509932	ezrA	USA300HOU_1705	-	septation ring formation regulator EzrA
1667	 35.48	0	1831256..1831720	+	154	161509933	-	USA300HOU_1706	-	GAF domain-containing protein
1668	 35.82	0	1831964..1832566	+	200	161509934	rpsD	USA300HOU_1707	-	30S ribosomal protein S4
1669	 27.84	-1	1832639..1832893	+	84	161509935	-	USA300HOU_1708	-	hypothetical protein
1670	 32.12	0	1832782..1833525	-	247	161509936	ugpQ2	USA300HOU_1709	-	glycerophosphodiester phosphodiesterase
1671	 34.90	0	1833605..1834051	+	148	161509937	-	USA300HOU_1710	-	hypothetical protein
1672	 34.02	0	1834165..1835325	+	386	161509938	-	USA300HOU_1711	-	class V aminotransferase
1673	 34.64	0	1835312..1836916	+	534	161509939	serA	USA300HOU_1712	-	D-3-phosphoglycerate dehydrogenase
1674	 29.73	0	1836888..1836998	-	36	161509940	-	USA300HOU_1713	-	hypothetical protein
1675	 31.74	0	1837066..1838196	-	376	161509941	-	USA300HOU_1714	-	hypothetical protein
1676	 34.49	0	1838303..1839769	-	488	161509942	-	USA300HOU_1715	-	PTS family porter component IIBC
1677	 34.27	0	1840686..1841960	+	424	161509943	-	USA300HOU_1716	-	peptidase
1678	 33.33	0	1842054..1843316	-	420	161509944	tyrS	USA300HOU_1717	-	tyrosyl-tRNA synthetase
1679	 30.24	0	1843698..1844603	+	301	161509945	sgtA	USA300HOU_1718	-	transglycosylase
1680	 25.81	-1	1844583..1844675	-	30	161509946	-	USA300HOU_1719	-	hypothetical protein
1681	 33.56	0	1844806..1847493	-	895	161509947	-	USA300HOU_1720	-	cell wall surface anchored protein
1682	 36.27	0	1847789..1849489	-	566	161509948	fhs	USA300HOU_1721	-	formate--tetrahydrofolate ligase
1683	 36.56	+1	1849896..1851602	-	568	161509949	acsA1	USA300HOU_1722	-	acetyl-CoA synthetase
1684	 34.44	0	1851771..1852403	+	210	161509950	acuA	USA300HOU_1723	-	acetoin utilization protein AcuA
1685	 34.62	0	1852428..1853597	+	389	161509951	acuC	USA300HOU_1724	-	acetoin utilization protein AcuC
1686	 33.13	0	1853695..1854684	-	329	161509952	ccpA	USA300HOU_1725	-	catabolite control protein A
1687	 20.18	-2	1854757..1854870	-	37	161509953	-	USA300HOU_1726	-	hypothetical protein
1688	 33.70	0	1855224..1856315	-	363	161509954	-	USA300HOU_1727	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
1689	 33.26	0	1857015..1858373	-	452	161509955	-	USA300HOU_1728	-	hypothetical protein
1690	 33.54	0	1858447..1858938	-	163	161509956	-	USA300HOU_1729	-	hypothetical protein
1691	 31.28	0	1859012..1860325	-	437	161509957	murC	USA300HOU_1730	-	UDP-N-acetylmuramate--L-alanine ligase
1692	 33.57	0	1860349..1864173	-	1274	161509958	-	USA300HOU_1731	-	DNA translocase
1693	 31.32	0	1864194..1864790	-	198	161509959	pheT2	USA300HOU_1732	-	phenylalanine--tRNA ligase beta subunit
1694	 30.96	0	1864819..1865661	-	280	161509960	-	USA300HOU_1733	-	hypothetical protein
1695	 33.01	0	1865776..1866087	-	103	161509961	-	USA300HOU_1734	-	thioredoxin
1696	 34.08	0	1866152..1867228	-	358	161509962	pepA1	USA300HOU_1735	-	M42 family glutamyl aminopeptidase
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.