IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus USA300_TCH1516



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.63 STD DEV: 3.73
Staphylococcus aureus subsp. aureus USA300_TCH1516, complete genome - 1..2872915
2657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1566	 34.93	0	1712674..1713426	-	250	161509832	-	USA300HOU_1605	-	hypothetical protein
1567	 35.68	0	1713426..1714787	-	453	161509833	-	USA300HOU_1606	-	biotin carboxylase
1568	 30.44	0	1714801..1715250	-	149	161509834	-	USA300HOU_1607	-	acetyl-CoA carboxylase biotin carboxyl carrier subunit
1569	 34.32	0	1715252..1716262	-	336	161509835	-	USA300HOU_1608	-	hypothetical protein
1570	 32.93	0	1716252..1716986	-	244	161509836	-	USA300HOU_1609	-	hypothetical protein
1571	 33.33	0	1717312..1717788	-	158	161509837	greA	USA300HOU_1610	-	transcription elongation factor
1572	 33.49	0	1717816..1718439	-	207	161509838	udk	USA300HOU_1611	-	uridine kinase
1573	 35.46	0	1718439..1719707	-	422	161509839	-	USA300HOU_1612	-	U32 family peptidase
1574	 33.87	0	1719719..1720648	-	309	161509840	-	USA300HOU_1613	-	U32 family peptidase
1575	 29.26	0	1720645..1721283	-	212	161509841	-	USA300HOU_1614	-	caffeoyl-CoA O-methyltransferase
1576	 32.69	0	1721568..1721876	-	102	161509842	-	USA300HOU_1615	-	hypothetical protein
1577	 32.87	0	1721891..1722319	-	142	161509843	-	USA300HOU_1616	-	hypothetical protein
1578	 30.65	0	1722323..1722583	-	86	161509844	-	USA300HOU_1617	-	hypothetical protein
1579	 35.16	0	1722646..1725279	-	877	161509845	alaS	USA300HOU_1618	-	alanyl-tRNA synthetase
1580	 32.77	0	1725619..1728096	-	825	161509846	recD	USA300HOU_1619	-	exodeoxyribonuclease V alpha subunit
1581	 31.24	0	1728098..1728766	-	222	161509847	-	USA300HOU_1620	-	tetratricopeptide domain-containing protein
1582	 34.94	0	1729228..1730346	-	372	161509848	trmU	USA300HOU_1621	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1583	 34.73	0	1730347..1731489	-	380	161509849	csd1	USA300HOU_1622	-	cysteine desulfurase
1584	 36.09	0	1731801..1732814	+	337	161509850	-	USA300HOU_1623	-	dehydrogenase
1585	 24.49	-2	1733051..1733197	-	48	161509851	-	USA300HOU_1624	-	hypothetical protein
1586	 28.42	-1	1733237..1733419	-	60	161509852	-	USA300HOU_1625	-	hypothetical protein
1587	 32.95	0	1735461..1736234	-	257	161509853	-	USA300HOU_1626	-	hypothetical protein
1588	 24.03	-2	1736234..1736362	-	42	161509854	-	USA300HOU_1627	-	hypothetical protein
1589	 35.60	0	1736695..1738461	-	588	161509855	aspS	USA300HOU_1628	-	aspartyl-tRNA synthetase
1590	 32.70	0	1738477..1739739	-	420	161509856	hisS	USA300HOU_1629	-	histidyl-tRNA synthetase
1591	 33.33	0	1740200..1741075	-	291	161509857	lytH	USA300HOU_1630	-	N-acetylmuramoyl-L-alanine amidase
1592	 32.01	0	1741072..1741524	-	150	161509858	dtd	USA300HOU_1631	-	D-tyrosyl-tRNA deacylase
1593	 34.55	0	1741536..1743746	-	736	161509859	relA2	USA300HOU_1632	-	GTP pyrophosphokinase
1594	 34.49	0	1744153..1744671	-	172	161509860	apt	USA300HOU_1633	-	adenine phosphoribosyltransferase
1595	 32.37	0	1744693..1746966	-	757	161509861	recJ	USA300HOU_1634	-	recombination protein RecJ
1596	 24.39	-2	1746917..1747039	+	40	161509862	-	USA300HOU_1635	-	hypothetical protein
1597	 32.63	0	1747169..1749448	-	759	161509863	secDF	USA300HOU_1636	-	bifunctional preprotein translocase subunit SecD/SecF
1598	 31.80	0	1749723..1749983	-	86	161509864	yajC	USA300HOU_1637	-	type I general secretory pathway preprotein translocase subunit YajC
1599	 35.70	0	1750002..1751141	-	379	161509865	tgt	USA300HOU_1638	-	queuine tRNA-ribosyltransferase
1600	 33.33	0	1751164..1752189	-	341	161509866	queA	USA300HOU_1639	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1601	 37.21	+1	1752191..1753195	-	334	161509867	ruvB	USA300HOU_1640	-	Holliday junction DNA helicase B
1602	 33.17	0	1753227..1753829	-	200	161509868	ruvA	USA300HOU_1641	-	crossover junction endodeoxyribonuclease
1603	 29.17	0	1753843..1754298	-	151	161509869	-	USA300HOU_1642	-	hypothetical protein
1604	 36.66	+1	1754311..1755603	-	430	161509870	-	USA300HOU_1643	-	GTPase ObgE
1605	 38.25	+1	1755958..1756242	-	94	161509871	rpmA	USA300HOU_1644	-	50S ribosomal protein L27
1606	 34.27	0	1756254..1756574	-	106	161509872	-	USA300HOU_1645	-	hypothetical protein
1607	 33.66	0	1756580..1756888	-	102	161509873	rplU	USA300HOU_1646	-	50S ribosomal protein L21
1608	 28.81	-1	1757055..1757585	-	176	161509874	-	USA300HOU_1647	-	hypothetical protein
1609	 31.08	0	1757585..1758427	-	280	161509875	mreC	USA300HOU_1648	-	cell shape protein MreC
1610	 38.33	+1	1758627..1758746	-	39	161509876	-	USA300HOU_1649	-	hypothetical protein
1611	 28.48	-1	1758820..1759293	-	157	161509877	-	USA300HOU_1650	-	hypothetical protein
1612	 36.14	0	1759767..1760051	-	94	161509878	-	USA300HOU_1651	-	hypothetical protein
1613	 32.74	0	1760119..1760790	-	223	161509879	radC	USA300HOU_1652	-	DNA repair protein RadC
1614	 28.39	-1	1760802..1761509	-	235	161509880	-	USA300HOU_1653	-	A24 family peptidase
1615	 32.78	0	1761779..1763050	-	423	161509881	folC	USA300HOU_1654	-	tetrahydrofolate synthase
1616	 34.40	0	1763063..1765693	-	876	161509882	valS	USA300HOU_1655	-	valyl-tRNA synthetase
1617	 33.33	0	1766096..1766656	+	186	161509883	tag	USA300HOU_1656	-	3-methyladenine glycosidase
1618	 29.98	0	1766879..1767952	-	357	161509884	-	USA300HOU_1657	-	ammonia monooxygenase
1619	 40.20	+2	1767986..1768087	-	33	161509885	-	USA300HOU_1658	-	hypothetical protein
1620	 36.44	+1	1768148..1769434	-	428	161509886	hemL	USA300HOU_1659	-	glutamate-1-semialdehyde aminotransferase
1621	 35.49	0	1769482..1770456	-	324	161509887	hemB	USA300HOU_1660	-	delta-aminolevulinic acid dehydratase
1622	 30.49	0	1770459..1771127	-	222	161509888	hemD	USA300HOU_1661	-	uroporphyrinogen III synthase
1623	 34.52	0	1771149..1772075	-	308	161509889	hemC	USA300HOU_1662	-	porphobilinogen deaminase
1624	 27.94	-1	1772117..1772932	-	271	161509890	-	USA300HOU_1663	-	cytochrome c assembly protein
1625	 33.78	0	1772954..1774300	-	448	161509891	hemA	USA300HOU_1664	-	glutamyl-tRNA reductase
1626	 29.10	0	1774517..1775107	-	196	161509892	-	USA300HOU_1665	-	GTPase EngB
1627	 34.13	0	1775261..1776523	-	420	161509893	clpX	USA300HOU_1666	-	ATP-dependent protease ATP-binding subunit
1628	 33.95	0	1776674..1777975	-	433	161509894	-	USA300HOU_1667	-	trigger factor
1629	 34.81	0	1781224..1782717	-	497	161509895	lysP	USA300HOU_1668	-	APC family amino acid-polyamine-organocation transporter
1630	 35.14	0	1783143..1785080	-	645	161509896	thrS	USA300HOU_1669	-	threonyl-tRNA synthetase
1631	 26.83	-1	1785278..1785400	-	40	161509897	-	USA300HOU_1670	-	hypothetical protein
1632	 34.31	0	1785493..1786413	-	306	161509898	dnaI	USA300HOU_1671	-	primosomal protein DnaI
1633	 32.83	0	1786413..1787813	-	466	161509899	dnaB2	USA300HOU_1672	-	replicative DNA helicase
1634	 35.67	0	1787814..1788284	-	156	161509900	-	USA300HOU_1673	-	transcriptional regulator NrdR
1635	 32.85	0	1788494..1789519	-	341	161509901	gapB	USA300HOU_1674	-	glyceraldehyde 3-phosphate dehydrogenase 2
1636	 34.46	0	1789689..1790312	-	207	161509902	coaE	USA300HOU_1675	-	dephospho-CoA kinase
1637	 32.07	0	1790328..1791200	-	290	161509903	fpg	USA300HOU_1676	-	formamidopyrimidine-DNA glycosylase
1638	 32.23	0	1791216..1793846	-	876	161509904	polA	USA300HOU_1677	-	DNA polymerase I
1639	 28.68	-1	1794140..1795642	-	500	161509905	-	USA300HOU_1678	-	hypothetical protein
1640	 31.05	0	1796126..1797790	-	554	161509906	-	USA300HOU_1679	-	sensor histidine kinase
1641	 33.90	0	1797787..1798491	-	234	161509907	-	USA300HOU_1680	-	alkaline phosphatase synthesis transcriptional regulatory protein
1642	 34.99	0	1798881..1800149	-	422	161509908	icd	USA300HOU_1681	-	isocitrate dehydrogenase
1643	 36.45	+1	1800198..1801319	-	373	161509909	citZ	USA300HOU_1682	-	methylcitrate synthase
1644	 34.88	0	1801667..1803028	+	453	161509910	-	USA300HOU_1683	-	APC family amino acid-polyamine-organocation transporter
1645	 34.76	0	1805353..1807110	-	585	161509911	pykA	USA300HOU_1684	-	pyruvate kinase
1646	 37.05	+1	1807132..1808100	-	322	161509912	pfkA	USA300HOU_1685	-	6-phosphofructokinase
1647	 34.18	0	1808369..1809313	-	314	161509913	accA	USA300HOU_1686	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1648	 34.27	0	1809313..1810170	-	285	161509914	accD	USA300HOU_1687	-	acetyl-CoA carboxylase subunit beta
1649	 35.77	0	1810365..1811594	-	409	161509915	-	USA300HOU_1688	-	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+))
1650	 31.58	0	1812044..1815241	-	1065	161509916	dnaE2	USA300HOU_1689	-	DNA-directed DNA polymerase III alpha subunit
1651	 35.24	0	1815262..1816203	-	313	161509917	-	USA300HOU_1690	-	hypothetical protein
1652	 33.56	0	1816464..1817762	-	432	161509918	-	USA300HOU_1691	-	hypothetical protein
1653	 33.33	0	1817967..1818380	+	137	161509919	-	USA300HOU_1692	-	universal stress protein
1654	 33.62	0	1818685..1819374	-	229	161509920	-	USA300HOU_1693	-	metal-dependent hydrolase
1655	 33.14	0	1819549..1820604	+	351	161509921	pepQ	USA300HOU_1694	-	M24 family Xaa-Pro dipeptidase
1656	 29.29	0	1820698..1820796	-	32	161509922	-	USA300HOU_1695	-	hypothetical protein
1657	 35.92	0	1820920..1822038	-	372	161509923	ald	USA300HOU_1696	-	alanine dehydrogenase
1658	 35.53	0	1822179..1822679	+	166	161509924	-	USA300HOU_1697	-	universal stress protein
1659	 35.08	0	1822925..1824127	-	400	161509925	ackA	USA300HOU_1698	-	acetate kinase
1660	 31.96	0	1824215..1825162	-	315	161509926	-	USA300HOU_1699	-	hypothetical protein
1661	 35.15	0	1825285..1825779	-	164	161509927	ahpC2	USA300HOU_1700	-	peroxiredoxin
1662	 32.56	0	1825877..1826647	-	256	161509928	-	USA300HOU_1701	-	hypothetical protein
1663	 33.42	0	1826691..1827914	-	407	161509929	thiI	USA300HOU_1702	-	thiamine biosynthesis protein
1664	 31.58	0	1827914..1829053	-	379	161509930	csd2	USA300HOU_1703	-	cysteine desulfurase
1665	 25.53	-1	1829211..1829351	+	46	161509931	-	USA300HOU_1704	-	hypothetical protein
32.63	MEAN

3.73	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.